Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.2494 Acer truncatum HOM05D000922 ORTHO05D007418 0.0e+00 2151.7 1136 100.0
Ciclev10018588m.g Citrus clementina HOM05D000922 ORTHO05D007418 0.0e+00 1328.9 1184 66.1
Cfa019149 Carpinus fangiana HOM05D000922 ORTHO05D007418 0.0e+00 1136.7 1179 58.5
Haze_07516 Corylus avellana HOM05D000922 ORTHO05D007418 0.0e+00 1125.9 1223 56.6
Manes.14G064400 Manihot esculenta HOM05D000922 ORTHO05D007418 0.0e+00 1095.1 1138 55.0
Thecc.03G014400 Theobroma cacao HOM05D000922 ORTHO05D007418 0.0e+00 1094.0 1153 55.9
CiPaw.11G024700 Carya illinoinensis HOM05D000922 ORTHO05D007418 0.0e+00 1093.6 1168 54.5
QL10p011002 Quercus lobata HOM05D000922 ORTHO05D007418 0.0e+00 1093.6 1175 57.9
MD06G1172500 Malus domestica HOM05D000922 ORTHO05D007418 1.7e-309 1066.2 1163 53.7
GSVIVG01007724001 Vitis vinifera HOM05D000922 ORTHO05D007418 8.5e-309 1063.9 1128 52.9
Prupe.5G171800 Prunus persica HOM05D000922 ORTHO05D007418 1.1e-305 1053.5 1186 55.9
Potri.015G078300 Populus trichocarpa HOM05D000922 ORTHO05D007418 9.1e-303 1043.9 1145 53.2
TWI23G1000 Tripterygium wilfordii HOM05D000922 ORTHO05D007418 2.6e-302 1042.3 1161 52.5
Potri.012G082500 Populus trichocarpa HOM05D000922 ORTHO05D007418 8.5e-301 1037.3 1142 54.4
Duzib205G1607 Durio zibethinus HOM05D000922 ORTHO05D007418 7.2e-300 1034.2 1107 53.2
MD14G1178400 Malus domestica HOM05D000922 ORTHO05D007418 1.6e-299 1033.1 1159 56.5
Sabra15G0102900 Salix brachista HOM05D000922 ORTHO05D007418 4.4e-297 1025.0 1144 53.8
RcHm_v2.0_Chr7g0193371 Rosa chinensis HOM05D000922 ORTHO05D007418 1.1e-295 1020.4 1141 56.7
FvH4_5g05470 Fragaria vesca HOM05D000922 ORTHO05D007418 8.5e-293 1010.7 1150 53.3
FAN18G1332 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.2e-291 1006.9 1149 52.8
TAR622G0946 Trochodendron aralioides HOM05D000922 ORTHO05D007418 2.3e-290 1002.7 1217 49.6
CSS0017974 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D007418 3.7e-288 995.3 1200 50.3
FAN08G1289 Fragaria x ananassa HOM05D000922 ORTHO05D007418 3.7e-288 995.3 1151 52.6
FAN13G2825 Fragaria x ananassa HOM05D000922 ORTHO05D007418 4.5e-286 988.4 1204 54.4
Duzib068G1349 Durio zibethinus HOM05D000922 ORTHO05D007418 7.7e-286 987.6 1151 51.4
Gorai.008G296200 Gossypium raimondii HOM05D000922 ORTHO05D007418 2.2e-285 986.1 1148 51.0
Hma1.2p1_2469F.1_g322680 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 6.5e-285 984.6 1186 50.3
CANSAT80G2096 Cannabis sativa HOM05D000922 ORTHO05D007418 1.9e-284 983.0 1167 50.3
Gohir.D12G275700 Gossypium hirsutum HOM05D000922 ORTHO05D007418 4.4e-281 971.8 1147 50.7
Sabra12G0059200 Salix brachista HOM05D000922 ORTHO05D007418 4.9e-280 968.4 1142 51.6
FAN18G2587 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.2e-278 963.8 1221 49.1
Eucgr.B00297 Eucalyptus grandis HOM05D000922 ORTHO05D007418 2.0e-273 946.4 1157 49.8
FAN04G3074 Fragaria x ananassa HOM05D000922 ORTHO05D007418 4.3e-268 928.7 987 56.3
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 5.6e-268 928.3 1188 48.9
Lj9A446G57 Lonicera japonica HOM05D000922 ORTHO05D007418 1.4e-266 923.7 1152 48.9
Nn4g22714 Nelumbo nucifera HOM05D000922 ORTHO05D007418 2.4e-263 912.9 1264 46.3
PGR083G1532 Punica granatum HOM05D000922 ORTHO05D007418 5.4e-263 911.8 1156 48.3
Hma1.2p1_2165F.1_g315780 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 1.3e-261 907.1 908 55.3
ClCG06G017060 Citrullus lanatus HOM05D000922 ORTHO05D007418 8.9e-258 894.4 1189 45.8
arahy.Tifrunner.gnm1.ann1.F0ZNJX Arachis hypogaea HOM05D000922 ORTHO05D007418 1.2e-254 884.0 1172 47.3
arahy.Tifrunner.gnm1.ann1.9TFG5W Arachis hypogaea HOM05D000922 ORTHO05D007418 7.8e-254 881.3 1171 47.3
PSO478G1387 Papaver somniferum HOM05D000922 ORTHO05D007418 1.1e-250 870.9 1174 46.3
Sc04g0001750 Simmondsia chinensis HOM05D000922 ORTHO05D007418 1.1e-250 870.9 1184 47.1
PSO017G6576 Papaver somniferum HOM05D000922 ORTHO05D007418 7.6e-249 864.8 1180 45.8
Aqoxy3G02884 Aquilegia oxysepala HOM05D000922 ORTHO05D007418 1.6e-246 857.1 1199 44.7
DCAR_016480 Daucus carota HOM05D000922 ORTHO05D007418 3.3e-244 849.4 1188 45.7
Ca_16166_v3 Cicer arietinum L. HOM05D000922 ORTHO05D007418 3.1e-242 842.8 1153 45.6
Glyma.04G184600 Glycine max HOM05D000922 ORTHO05D007418 7.6e-241 838.2 1132 48.6
Sed0021678 Sechium edule HOM05D000922 ORTHO05D007418 1.7e-240 837.0 1152 45.5
Peaxi162Scf00255g01019 Petunia axillaris HOM05D000922 ORTHO05D007418 8.4e-240 834.7 1194 45.4
MSTRG.23139 Avicennia marina HOM05D000922 ORTHO05D007418 1.1e-239 834.3 1167 45.1
TPR.G20687 Trifolium pratense HOM05D000922 ORTHO05D007418 5.4e-239 832.0 1146 45.9
Psat0ss3962g0400 Pisum sativum HOM05D000922 ORTHO05D007418 1.7e-237 827.0 1131 45.9
Cc04_g12110 Coffea canephora HOM05D000922 ORTHO05D007418 8.7e-237 824.7 1107 45.9
Medtr3g077620 Medicago truncatula HOM05D000922 ORTHO05D007418 8.7e-237 824.7 1146 47.1
MELO3C017091.2 Cucumis melo HOM05D000922 ORTHO05D007418 8.1e-235 818.1 1199 43.4
VMungo1309G1607 Vigna mungo HOM05D000922 ORTHO05D007418 8.1e-235 818.1 1148 45.3
Lj1g0015886 Lotus japonicus HOM05D000922 ORTHO05D007418 1.4e-234 817.4 1154 47.2
Phvul.009G177300 Phaseolus vulgaris HOM05D000922 ORTHO05D007418 3.1e-234 816.2 1145 45.4
Nitab4.5_0001514g0050 Nicotiana tabacum HOM05D000922 ORTHO05D007418 9.0e-234 814.7 1195 44.2
Glyma.06G181100 Glycine max HOM05D000922 ORTHO05D007418 1.5e-233 813.9 1125 48.4
vmacro19399 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 7.6e-233 811.6 558 71.3
Hund02754 Selenicereus undatus HOM05D000922 ORTHO05D007418 1.1e-231 807.7 1158 43.9
Lsat_1_v5_gn_5_15041 Lactuca sativa HOM05D000922 ORTHO05D007418 2.3e-229 800.0 1106 44.8
EL10Ac5g10730 Beta vulgaris HOM05D000922 ORTHO05D007418 3.0e-229 799.7 1133 45.5
AUR62008194 Chenopodium quinoa HOM05D000922 ORTHO05D007418 4.8e-227 792.3 1127 45.3
Oeu016401.1 Olea europaea HOM05D000922 ORTHO05D007418 4.8e-227 792.3 1043 47.7
AUR62030946 Chenopodium quinoa HOM05D000922 ORTHO05D007418 4.5e-225 785.8 1146 45.1
CARHR156940 Cardamine hirsuta HOM05D000922 ORTHO05D007418 1.7e-224 783.9 1129 43.7
HanXRQChr05g0155771 Helianthus annuus HOM05D000922 ORTHO05D007418 3.8e-224 782.7 1149 43.5
Migut.O00098 Erythranthe guttata HOM05D000922 ORTHO05D007418 1.2e-222 777.7 1171 43.0
Carub.0005s1432 Capsella rubella HOM05D000922 ORTHO05D007418 2.1e-222 776.9 1146 43.9
Sp5g13830 Schrenkiella parvula HOM05D000922 ORTHO05D007418 1.8e-221 773.9 1154 43.2
CAN.G1166.3 Capsicum annuum HOM05D000922 ORTHO05D007418 2.3e-221 773.5 951 48.1
Aa31LG4G16800 Aethionema arabicum HOM05D000922 ORTHO05D007418 3.9e-221 772.7 1133 44.2
Lalb_Chr23g0273281 Lupinus albus HOM05D000922 ORTHO05D007418 1.1e-220 771.2 558 68.3
Gohir.A12G275000 Gossypium hirsutum HOM05D000922 ORTHO05D007418 3.3e-220 769.6 984 48.5
Sopen03g031910 Solanum pennellii HOM05D000922 ORTHO05D007418 4.3e-220 769.2 940 47.8
Thhalv10010097m.g Eutrema salsugineum HOM05D000922 ORTHO05D007418 4.0e-218 762.7 1131 43.1
SGA_v2.0_scaffold90G27900 Striga asiatica HOM05D000922 ORTHO05D007418 3.4e-217 759.6 1139 42.8
Peaxi162Scf00089g01840 Petunia axillaris HOM05D000922 ORTHO05D007418 6.5e-216 755.4 935 46.2
AL5G27540 Arabidopsis lyrata HOM05D000922 ORTHO05D007418 4.6e-214 749.2 1170 42.6
BcaB05g22925 Brassica carinata HOM05D000922 ORTHO05D007418 1.0e-213 748.0 1139 42.1
SalBow5G3118 Salvia bowleyana HOM05D000922 ORTHO05D007418 2.8e-211 740.0 1023 44.2
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 8.2e-211 738.4 1184 42.9
THA.LOC104798972 Tarenaya hassleriana HOM05D000922 ORTHO05D007418 1.8e-210 737.3 1045 45.5
SalBow5G1735 Salvia bowleyana HOM05D000922 ORTHO05D007418 2.6e-209 733.4 1023 44.2
Dinv38573 Davidia involucrata HOM05D000922 ORTHO05D007418 2.2e-208 730.3 841 51.6
BcaC09g49852 Brassica carinata HOM05D000922 ORTHO05D007418 9.3e-207 724.9 1127 42.1
AT3G48195 Arabidopsis thaliana HOM05D000922 ORTHO05D007418 1.2e-206 724.5 1108 41.9
Ah.02g110580 Amaranthus hybridus HOM05D000922 ORTHO05D007418 4.6e-206 722.6 1222 40.0
BraA01t02462Z Brassica rapa HOM05D000922 ORTHO05D007418 7.9e-206 721.8 1139 41.1
BolC1t03155H Brassica oleracea HOM05D000922 ORTHO05D007418 5.1e-205 719.2 1114 41.8
ATR1091G081 Amborella trichopoda HOM05D000922 ORTHO05D007418 1.3e-203 714.5 1156 44.8
A01p25510 Brassica napus HOM05D000922 ORTHO05D007418 4.2e-199 699.5 563 62.2
Solyc03g112830.4 Solanum lycopersicum HOM05D000922 ORTHO05D007418 3.3e-196 689.9 938 44.7
HPP92_009707 Vanilla planifolia HOM05D000922 ORTHO05D007418 4.1e-186 656.4 1092 39.9
unitig_26.g9619 Utricularia gibba HOM05D000922 ORTHO05D007418 3.5e-185 653.3 1152 38.3
CDE06G1806 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 3.1e-178 630.2 1133 38.9
Os01g0549500 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D007418 2.1e-174 617.5 573 54.6
CsaV3_1G001450 Cucumis sativus L. HOM05D000922 ORTHO05D007418 6.8e-165 585.9 961 40.8
Nitab4.5_0000025g0520 Nicotiana tabacum HOM05D000922 ORTHO05D007418 3.6e-158 563.5 1193 35.9
COL.COLO4_30068 Corchorus olitorius HOM05D000922 ORTHO05D007418 1.0e-157 562.0 901 42.1
Actinidia33077 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.9e-151 541.2 482 59.5
Actinidia19330 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.1e-146 525.4 940 40.7
Cpa.g.sc2974.2 Carica papaya HOM05D000922 ORTHO05D007418 3.4e-140 503.8 315 75.2
SHI17077 Sapria himalayana HOM05D000922 ORTHO05D007418 1.2e-134 485.3 789 38.5
Zm00001eb162380 Zea mays HOM05D000922 ORTHO05D007418 1.2e-134 485.3 459 55.1
SEGI_24933 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 2.1e-121 441.4 548 45.3
SEGI_19196 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 4.3e-119 433.7 437 51.9
Mapoly0023s0026 Marchantia polymorpha HOM05D000922 ORTHO05D007418 9.6e-119 432.6 514 46.1
Cpa.g.sc2974.1 Carica papaya HOM05D000922 ORTHO05D007418 1.2e-116 425.6 807 40.5
SMO367G0209 Selaginella moellendorffii HOM05D000922 ORTHO05D007418 9.3e-114 416.0 500 43.2
Pp3c26_1280 Physcomitrium patens HOM05D000922 ORTHO05D007418 3.2e-106 391.0 550 41.5
Dinv20638 Davidia involucrata HOM05D000922 ORTHO05D007418 3.2e-82 311.2 228 72.4
ECA246G0682 Erigeron canadensis HOM05D000922 ORTHO05D007418 7.4e-79 300.1 748 34.8
C01p31950 Brassica napus HOM05D000922 ORTHO05D007418 1.4e-74 285.8 762 33.1
ECA246G4214 Erigeron canadensis HOM05D000922 ORTHO05D007418 1.2e-73 282.7 226 64.2
Lalb_Chr23g0273291 Lupinus albus HOM05D000922 ORTHO05D007418 4.9e-38 164.5 415 34.7
CDE07G0520 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 5.6e-34 151.0 279 35.5
vmacro19400 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 1.0e-27 130.2 412 35.2
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 2.7e-20 105.5 137 54.7
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 3.0e-19 102.1 84 60.7
PRCOL_00005721 Prasinoderma coloniale HOM05D000922 ORTHO05D007418 1.9e-18 99.4 307 27.4
Actinidia33076 Actinidia chinensis HOM05D000922 ORTHO05D007418 9.5e-18 97.1 186 39.2
CAN.G1651.1 Capsicum annuum HOM05D003439 ORTHO05D000484 8.9e-16 90.5 78 61.5
Peaxi162Scf00470g00024 Petunia axillaris HOM05D000861 ORTHO05D007418 3.4e-15 88.6 101 48.5
Peaxi162Scf00397g00009 Petunia axillaris HOM05D000922 ORTHO05D015732 5.8e-15 87.8 57 68.4
Peaxi162Scf01130g00212 Petunia axillaris HOM05D000861 ORTHO05D007418 1.7e-14 86.3 49 79.6
Peaxi162Scf00009g02111 Petunia axillaris HOM05D000861 ORTHO05D007418 6.4e-14 84.3 116 44.8
Peaxi162Scf00304g01332 Petunia axillaris HOM05D000922 ORTHO05D007418 2.4e-13 82.4 53 71.7
FAN04G1664 Fragaria x ananassa HOM05D000922 ORTHO05D007418 7.1e-13 80.9 144 47.2
Cfa000646 Carpinus fangiana HOM05D000922 ORTHO05D007418 5.1e-11 74.7 154 40.3


User provided reference genes

Program Settings