Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 3.3e-151 538.5 302 100.0
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 3.6e-113 412.1 305 73.8
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 7.4e-111 404.4 308 74.7
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 2.9e-107 392.5 296 72.0
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 1.9e-106 389.8 215 87.9
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 1.6e-105 386.7 306 67.0
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 1.6e-105 386.7 306 67.0
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 1.0e-104 384.0 301 66.1
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 6.7e-104 381.3 306 74.8
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 2.6e-103 379.4 314 63.7
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 4.4e-103 378.6 302 66.6
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 5.7e-103 378.3 215 85.1
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 5.7e-103 378.3 332 66.9
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 6.3e-102 374.8 212 85.4
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 6.3e-102 374.8 215 83.3
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.4e-101 373.6 313 64.5
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.8e-101 373.2 311 65.0
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 3.1e-101 372.5 311 65.0
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 1.0e-99 367.5 305 66.2
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 5.0e-99 365.2 215 83.3
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.1e-98 364.0 226 79.6
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 3.2e-98 362.5 307 65.1
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 4.2e-98 362.1 211 82.0
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 5.5e-98 361.7 211 81.5
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 7.2e-98 361.3 304 69.4
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 2.1e-97 359.8 313 62.0
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 3.6e-97 359.0 303 68.0
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 4.7e-97 358.6 211 82.0
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 6.1e-97 358.2 303 68.0
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 6.1e-97 358.2 299 67.9
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 1.0e-96 357.5 216 81.9
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 6.8e-96 354.8 213 78.4
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 8.8e-96 354.4 211 81.5
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.2e-95 354.0 211 82.0
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 4.4e-95 352.1 304 62.8
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 5.7e-95 351.7 216 80.1
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 5.7e-95 351.7 214 79.0
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 4.8e-94 348.6 208 81.2
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 4.8e-94 348.6 216 79.2
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 1.4e-93 347.1 303 68.0
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 1.8e-93 346.7 248 71.4
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 7.0e-93 344.7 211 80.1
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 9.1e-93 344.4 217 77.9
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.2e-92 344.0 195 84.1
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 1.2e-92 344.0 302 60.3
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 1.0e-91 340.9 302 68.5
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 8.5e-91 337.8 216 78.2
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 8.5e-91 337.8 215 75.8
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 1.5e-90 337.0 306 64.1
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 2.5e-90 336.3 214 77.6
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 5.5e-90 335.1 302 60.9
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 5.5e-90 335.1 213 77.0
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 1.2e-89 334.0 215 72.6
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 2.1e-89 333.2 299 59.2
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 2.7e-89 332.8 211 77.7
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 3.6e-89 332.4 211 78.2
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 3.6e-89 332.4 302 63.6
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 6.1e-89 331.6 212 76.9
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 8.0e-89 331.3 324 56.5
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 1.0e-88 330.9 302 63.2
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 1.0e-88 330.9 211 77.3
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 1.4e-88 330.5 215 76.3
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 1.8e-88 330.1 216 75.5
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 1.8e-88 330.1 212 76.4
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.8e-88 330.1 212 76.4
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 2.3e-88 329.7 216 74.5
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 3.0e-88 329.3 217 75.6
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 3.0e-88 329.3 209 77.5
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 5.2e-88 328.6 214 75.2
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 8.8e-88 327.8 211 76.3
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 1.2e-87 327.4 216 74.5
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 1.2e-87 327.4 212 77.4
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.5e-87 327.0 212 75.9
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 1.5e-87 327.0 211 75.4
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 6.3e-86 321.6 192 80.2
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 6.3e-86 321.6 212 70.3
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 1.8e-85 320.1 179 86.6
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 3.1e-85 319.3 302 63.2
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 4.1e-85 318.9 306 59.5
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 2.0e-84 316.6 210 75.7
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 2.7e-84 316.2 213 72.8
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 3.5e-84 315.8 179 85.5
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 5.0e-83 312.0 213 70.0
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 1.1e-82 310.8 209 71.3
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 1.9e-82 310.1 189 81.0
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 2.5e-82 309.7 213 68.5
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 1.0e-80 304.3 206 71.8
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 3.0e-80 302.8 210 69.5
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 5.2e-80 302.0 204 73.0
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 5.2e-80 302.0 215 68.8
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 1.2e-79 300.8 314 53.8
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 2.0e-79 300.1 216 69.0
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 1.3e-78 297.4 209 68.9
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.9e-78 296.2 215 69.3
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 1.4e-77 293.9 179 81.6
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 2.4e-77 293.1 153 87.6
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 1.6e-76 290.4 296 54.1
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 6.6e-75 285.0 204 67.6
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 6.6e-75 285.0 179 78.8
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 8.6e-75 284.6 179 75.4
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 2.0e-71 273.5 209 66.5
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 6.4e-70 268.5 240 60.8
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 9.2e-69 264.6 279 52.3
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 1.3e-59 234.2 120 90.0
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 2.6e-55 219.9 231 58.0
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 2.3e-51 206.8 134 75.4
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 8.6e-51 204.9 193 60.1
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 8.1e-49 198.4 205 48.8
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 8.4e-38 161.8 176 48.3
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 5.6e-34 149.1 90 84.4
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 2.8e-33 146.7 89 84.3
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 8.1e-33 145.2 104 72.1
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 7.6e-31 138.7 179 47.5
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 2.9e-30 136.7 94 75.5
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 1.6e-28 131.0 204 36.3
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 9.0e-24 115.2 190 42.6
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 7.6e-23 112.1 84 67.9
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 1.0e-22 111.7 63 81.0
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 1.6e-17 94.4 133 37.6
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 2.6e-15 87.0 61 72.1
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 5.9e-15 85.9 55 72.7
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 7.6e-15 85.5 107 42.1
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 1.0e-14 85.1 132 43.2
Cpa.g.sc685.1 Carica papaya HOM05D006234 ORTHO05D007813 3.7e-09 66.6 110 39.1
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 4.8e-09 66.2 159 34.6
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 6.3e-09 65.9 185 32.4
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 6.3e-09 65.9 170 32.4
RcHm_v2.0_Chr6g0279701 Rosa chinensis HOM05D006234 ORTHO05D007813 9.0e-08 62.0 54 63.0
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 5.9e-07 59.3 30 86.7
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 7.7e-07 58.9 168 29.2
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 7.7e-07 58.9 44 68.2
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.3e-06 58.2 112 36.6
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.7e-06 57.8 137 32.1
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 2.2e-06 57.4 156 30.1
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.2e-06 57.4 116 31.0
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 2.2e-06 57.4 137 32.8
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 3.8e-06 56.6 142 32.4
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 5.0e-06 56.2 152 28.3
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 6.5e-06 55.8 159 33.3
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 6.5e-06 55.8 137 32.8
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 8.5e-06 55.5 101 37.6


User provided reference genes

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