Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 7.6e-72 273.9 151 100.0
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 3.6e-58 228.4 152 77.0
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 5.3e-57 224.6 152 75.7
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 1.2e-56 223.4 151 81.5
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 2.0e-56 222.6 151 75.5
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 2.6e-56 222.2 152 75.0
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 9.9e-56 220.3 152 75.7
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 1.3e-55 219.9 152 73.7
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 3.8e-55 218.4 153 73.9
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 4.9e-55 218.0 152 73.0
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 8.4e-55 217.2 152 72.4
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 8.4e-55 217.2 151 74.2
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 1.1e-54 216.9 152 72.4
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 1.1e-54 216.9 152 71.7
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 1.4e-54 216.5 152 72.4
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 1.4e-54 216.5 152 71.1
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 2.4e-54 215.7 153 73.9
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 1.2e-53 213.4 152 79.6
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.2e-53 213.4 152 71.7
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 1.2e-53 213.4 152 74.3
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 1.6e-53 213.0 152 72.4
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 2.1e-53 212.6 152 74.3
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 2.1e-53 212.6 152 74.3
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 2.1e-53 212.6 153 73.9
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 2.7e-53 212.2 152 71.1
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 2.7e-53 212.2 152 71.1
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 3.5e-53 211.8 152 71.7
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 6.0e-53 211.1 151 69.5
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 6.0e-53 211.1 152 75.0
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 7.9e-53 210.7 153 73.2
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 7.9e-53 210.7 152 69.1
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.3e-52 209.9 151 69.5
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.8e-52 209.5 151 68.9
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 1.8e-52 209.5 152 71.1
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 2.3e-52 209.1 152 71.7
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 2.3e-52 209.1 154 71.4
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 3.0e-52 208.8 152 69.7
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 3.9e-52 208.4 154 71.4
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 3.9e-52 208.4 152 71.7
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 3.9e-52 208.4 155 72.3
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 3.9e-52 208.4 152 71.7
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 3.9e-52 208.4 155 71.6
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 3.9e-52 208.4 152 71.7
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 3.9e-52 208.4 155 72.3
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 3.9e-52 208.4 152 69.7
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 3.9e-52 208.4 152 69.7
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 5.1e-52 208.0 152 68.4
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 5.1e-52 208.0 156 73.1
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 6.7e-52 207.6 155 70.3
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 6.7e-52 207.6 153 72.5
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 8.7e-52 207.2 152 73.0
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 1.1e-51 206.8 155 74.2
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 1.1e-51 206.8 152 73.7
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 1.1e-51 206.8 154 70.8
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 1.1e-51 206.8 114 87.7
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 1.1e-51 206.8 152 69.1
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 1.1e-51 206.8 152 71.7
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 1.1e-51 206.8 152 71.7
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 1.5e-51 206.5 154 72.7
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 1.9e-51 206.1 152 69.1
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 1.9e-51 206.1 152 70.4
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 1.9e-51 206.1 154 71.4
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 2.5e-51 205.7 154 72.7
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 2.5e-51 205.7 152 74.3
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 3.3e-51 205.3 152 74.3
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 3.3e-51 205.3 152 75.0
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 3.3e-51 205.3 148 68.9
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 3.3e-51 205.3 151 78.1
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 3.3e-51 205.3 151 78.1
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 3.3e-51 205.3 152 73.7
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 5.6e-51 204.5 155 71.0
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 5.6e-51 204.5 155 71.0
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 9.6e-51 203.8 118 84.7
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 9.6e-51 203.8 153 71.2
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 9.6e-51 203.8 152 68.4
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 1.3e-50 203.4 152 77.6
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 1.3e-50 203.4 151 77.5
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 1.3e-50 203.4 153 70.6
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 1.6e-50 203.0 150 72.7
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 1.6e-50 203.0 150 67.3
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 1.6e-50 203.0 156 70.5
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 1.6e-50 203.0 152 69.7
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 1.6e-50 203.0 156 67.9
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.8e-50 202.2 114 84.2
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 3.7e-50 201.8 139 73.4
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 3.7e-50 201.8 157 70.1
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 3.7e-50 201.8 151 68.9
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 4.8e-50 201.4 118 83.9
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 4.8e-50 201.4 152 74.3
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 1.4e-49 199.9 152 69.7
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 1.4e-49 199.9 153 69.9
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 1.8e-49 199.5 152 70.4
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 1.8e-49 199.5 143 72.7
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 1.8e-49 199.5 152 77.0
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 2.4e-49 199.1 152 68.4
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 3.1e-49 198.7 153 68.6
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 3.1e-49 198.7 152 69.7
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 3.1e-49 198.7 154 67.5
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 4.0e-49 198.4 155 70.3
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 4.0e-49 198.4 111 87.4
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 6.9e-49 197.6 152 77.0
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 9.0e-49 197.2 157 69.4
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 9.0e-49 197.2 152 76.3
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 1.2e-48 196.8 173 60.7
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 1.5e-48 196.4 123 81.3
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 2.0e-48 196.1 152 68.4
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 2.6e-48 195.7 148 69.6
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 4.5e-48 194.9 152 67.1
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 5.8e-48 194.5 152 69.1
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.3e-47 193.4 152 69.7
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.3e-47 193.4 110 86.4
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 1.7e-47 193.0 228 51.3
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 1.4e-46 189.9 151 65.6
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 1.9e-46 189.5 152 67.8
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 2.5e-46 189.1 108 84.3
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 5.5e-46 188.0 155 65.8
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 7.1e-46 187.6 154 65.6
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 9.3e-46 187.2 111 82.0
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 6.0e-45 184.5 181 59.1
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 5.1e-44 181.4 109 79.8
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 2.1e-42 176.0 183 54.6
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.4e-41 173.3 213 55.4
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 2.6e-40 169.1 89 93.3
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 5.9e-40 167.9 90 90.0
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 2.9e-39 165.6 88 90.9
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 6.5e-39 164.5 88 89.8
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 5.7e-35 151.4 116 67.2
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 5.7e-35 151.4 118 65.3
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 6.3e-34 147.9 117 68.4
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 1.2e-29 133.7 119 57.1
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 7.9e-29 131.0 117 67.5
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 6.7e-28 127.9 108 61.1
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 2.6e-27 125.9 106 64.2
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 4.4e-27 125.2 152 57.9
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 4.1e-25 118.6 108 58.3
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 6.9e-25 117.9 63 92.1
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 6.5e-23 111.3 60 90.0
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 1.1e-19 100.5 84 59.5
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 3.3e-19 99.0 89 59.6
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 4.4e-19 98.6 86 54.7
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 3.8e-15 85.5 114 44.7
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 6.1e-13 78.2 86 45.3
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 1.0e-12 77.4 63 60.3
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 1.4e-12 77.0 91 47.3
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 1.1e-09 67.4 63 60.3
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 2.4e-09 66.2 35 88.6
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 1.1e-06 57.4 79 41.8
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 1.5e-06 57.0 43 67.4
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 1.5e-06 57.0 43 67.4
PRCOL_00002926 Prasinoderma coloniale HOM05D004802 ORTHO05D005591 1.5e-06 57.0 98 40.8
SHI01130 Sapria himalayana HOM05D004802 ORTHO05D005591 2.5e-06 56.2 61 47.5


User provided reference genes

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