Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.2409 Acer truncatum HOM05D000033 ORTHO05D004097 4.1e-62 241.1 115 100.0
Atru.chr9.2432 Acer truncatum HOM05D000033 ORTHO05D004097 4.3e-35 151.4 80 88.8
Ciclev10024093m.g Citrus clementina HOM05D000086 ORTHO05D004097 6.9e-25 117.5 96 59.4
Manes.16G004600 Manihot esculenta HOM05D000033 ORTHO05D004097 5.0e-23 111.3 79 62.0
Manes.14G068200 Manihot esculenta HOM05D000033 ORTHO05D004097 6.5e-23 110.9 77 64.9
GSVIVG01007793001 Vitis vinifera HOM05D000086 ORTHO05D004097 1.4e-22 109.8 96 55.2
Atru.chr9.2431 Acer truncatum HOM05D000033 ORTHO05D004097 2.5e-22 109.0 79 64.6
Dinv20680 Davidia involucrata HOM05D000033 ORTHO05D004097 7.2e-22 107.5 79 60.8
DCAR_016494 Daucus carota HOM05D000033 ORTHO05D004097 1.6e-21 106.3 96 55.2
Lj9C451T13 Lonicera japonica HOM05D000033 ORTHO05D004097 2.7e-21 105.5 97 58.8
HanXRQChr02g0037171 Helianthus annuus HOM05D000033 ORTHO05D004097 1.0e-20 103.6 96 53.1
Duzib205G1293 Durio zibethinus HOM05D000033 ORTHO05D004097 3.0e-20 102.1 77 59.7
Gohir.A07G061800 Gossypium hirsutum HOM05D000033 ORTHO05D004097 3.9e-20 101.7 96 50.0
Gohir.D07G066500 Gossypium hirsutum HOM05D000033 ORTHO05D004097 3.9e-20 101.7 96 50.0
Hma1.2p1_0176F.1_g077740 Hydrangea macrophylla HOM05D000033 ORTHO05D004097 3.9e-20 101.7 79 59.5
Lj5A122T97 Lonicera japonica HOM05D000033 ORTHO05D004097 3.9e-20 101.7 97 52.6
TWI81G0824 Tripterygium wilfordii HOM05D000033 ORTHO05D004097 6.7e-20 100.9 79 57.0
TWI81G0828 Tripterygium wilfordii HOM05D000033 ORTHO05D004097 6.7e-20 100.9 79 57.0
QL10p013606 Quercus lobata HOM05D000033 ORTHO05D004097 8.7e-20 100.5 80 58.8
RcHm_v2.0_Chr7g0193991 Rosa chinensis HOM05D000033 ORTHO05D004097 8.7e-20 100.5 80 60.0
Gorai.001G070200 Gossypium raimondii HOM05D000033 ORTHO05D004097 1.9e-19 99.4 96 49.0
Duzib084G0673 Durio zibethinus HOM05D000033 ORTHO05D004097 2.5e-19 99.0 77 58.4
PGSC0003DMG400024485 Solanum tuberosum HOM05D000033 ORTHO05D004097 3.3e-19 98.6 79 58.2
Hma1.2p1_2497F.1_g323350 Hydrangea macrophylla HOM05D000033 ORTHO05D004097 5.7e-19 97.8 69 59.4
Prupe.5G176900 Prunus persica HOM05D000033 ORTHO05D004097 5.7e-19 97.8 80 58.8
TAR374G0626 Trochodendron aralioides HOM05D000033 ORTHO05D004097 5.7e-19 97.8 73 63.0
DCAR_031304 Daucus carota HOM05D000033 ORTHO05D004097 7.4e-19 97.4 96 52.1
Oeu014507.1 Olea europaea HOM05D000033 ORTHO05D004097 7.4e-19 97.4 79 58.2
Aqoxy3G00952 Aquilegia oxysepala HOM05D000033 ORTHO05D004097 9.7e-19 97.1 79 54.4
TAR622G0894 Trochodendron aralioides HOM05D000033 ORTHO05D004097 9.7e-19 97.1 78 60.3
CSS0006799 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D004097 1.3e-18 96.7 66 65.2
Gohir.A09G170600 Gossypium hirsutum HOM05D000033 ORTHO05D004097 1.6e-18 96.3 96 47.9
Prupe.3G281400 Prunus persica HOM05D000033 ORTHO05D004097 1.6e-18 96.3 85 50.6
MD00G1171500 Malus domestica HOM05D000033 ORTHO05D004097 2.2e-18 95.9 81 60.5
MD06G1177700 Malus domestica HOM05D000033 ORTHO05D004097 2.2e-18 95.9 81 60.5
MD14G1184300 Malus domestica HOM05D000033 ORTHO05D004097 2.2e-18 95.9 80 61.2
Peaxi162Scf00017g02331 Petunia axillaris HOM05D000033 ORTHO05D004097 2.2e-18 95.9 79 57.0
TAR629G0652 Trochodendron aralioides HOM05D000033 ORTHO05D004097 2.2e-18 95.9 77 58.4
Gohir.D09G166300 Gossypium hirsutum HOM05D000033 ORTHO05D004097 2.8e-18 95.5 96 47.9
Gorai.006G188100 Gossypium raimondii HOM05D000033 ORTHO05D004097 2.8e-18 95.5 96 47.9
Actinidia04978 Actinidia chinensis HOM05D000033 ORTHO05D004097 3.7e-18 95.1 69 60.9
FAN18G4423 Fragaria x ananassa HOM05D000033 ORTHO05D004097 3.7e-18 95.1 80 58.8
Peaxi162Scf00496g00815 Petunia axillaris HOM05D000033 ORTHO05D004097 3.7e-18 95.1 79 55.7
Potri.012G078100 Populus trichocarpa HOM05D000033 ORTHO05D004097 3.7e-18 95.1 77 57.1
Solyc03g114080.2 Solanum lycopersicum HOM05D000033 ORTHO05D004097 3.7e-18 95.1 79 54.4
Nitab4.5_0000499g0010 Nicotiana tabacum HOM05D000033 ORTHO05D004097 6.3e-18 94.4 79 57.0
Cc00_g22560 Coffea canephora HOM05D000033 ORTHO05D004097 8.2e-18 94.0 79 57.0
Sopen03g033140 Solanum pennellii HOM05D000033 ORTHO05D004097 8.2e-18 94.0 79 54.4
Eucgr.B00352 Eucalyptus grandis HOM05D000033 ORTHO05D004097 1.4e-17 93.2 93 49.5
Rhsim08G0169800 Rhododendron simsii HOM05D000033 ORTHO05D004097 1.4e-17 93.2 79 53.2
FAN08G1315 Fragaria x ananassa HOM05D000033 ORTHO05D004097 1.8e-17 92.8 80 57.5
COL.COLO4_34070 Corchorus olitorius HOM05D000033 ORTHO05D004097 2.4e-17 92.4 96 49.0
HanXRQChr16g0503641 Helianthus annuus HOM05D000033 ORTHO05D004097 2.4e-17 92.4 79 51.9
Dinv35042 Davidia involucrata HOM05D000033 ORTHO05D004097 3.1e-17 92.0 96 44.8
ClCG09G018800 Citrullus lanatus HOM05D000033 ORTHO05D004097 4.1e-17 91.7 83 53.0
SalBow2G1168 Salvia bowleyana HOM05D000033 ORTHO05D004097 4.1e-17 91.7 79 51.9
Cc02_g32410 Coffea canephora HOM05D000033 ORTHO05D004097 5.3e-17 91.3 79 57.0
Dinv33510 Davidia involucrata HOM05D000033 ORTHO05D004097 5.3e-17 91.3 77 53.2
FAN04G0901 Fragaria x ananassa HOM05D000033 ORTHO05D004097 5.3e-17 91.3 80 57.5
Nitab4.5_0001422g0040 Nicotiana tabacum HOM05D000033 ORTHO05D004097 5.3e-17 91.3 79 55.7
FvH4_5g05050 Fragaria vesca HOM05D000033 ORTHO05D004097 6.9e-17 90.9 80 56.2
FAN13G1893 Fragaria x ananassa HOM05D000033 ORTHO05D004097 6.9e-17 90.9 80 56.2
Hma1.2p1_0967F.1_g242310 Hydrangea macrophylla HOM05D000033 ORTHO05D004097 6.9e-17 90.9 81 51.9
MBI15_g19750_MAGBIO Magnolia biondii HOM05D000033 ORTHO05D004097 9.0e-17 90.5 78 47.4
Rhsim12G0162900 Rhododendron simsii HOM05D000033 ORTHO05D004097 1.2e-16 90.1 77 57.1
FAN18G0180 Fragaria x ananassa HOM05D000033 ORTHO05D004097 1.5e-16 89.7 80 56.2
Lj1g0022926 Lotus japonicus HOM05D000033 ORTHO05D004097 2.0e-16 89.4 77 50.6
Sed0002690 Sechium edule HOM05D000033 ORTHO05D004097 2.0e-16 89.4 84 52.4
Lju41A33T80 Lonicera japonica HOM05D000033 ORTHO05D004097 3.4e-16 88.6 81 46.9
Lsat_1_v5_gn_1_26480 Lactuca sativa HOM05D000033 ORTHO05D004097 4.5e-16 88.2 67 56.7
Cpa.g.sc124.28 Carica papaya HOM05D000033 ORTHO05D004097 5.9e-16 87.8 74 55.4
Hma1.2p1_0697F.1_g204820 Hydrangea macrophylla HOM05D000033 ORTHO05D004097 5.9e-16 87.8 101 43.6
arahy.Tifrunner.gnm1.ann1.470PAV Arachis hypogaea HOM05D000033 ORTHO05D004097 1.0e-15 87.0 76 53.9
arahy.Tifrunner.gnm1.ann1.9KK1AG Arachis hypogaea HOM05D000033 ORTHO05D004097 1.0e-15 87.0 76 53.9
PGR083G0218 Punica granatum HOM05D000033 ORTHO05D004097 1.0e-15 87.0 79 49.4
Lsat_1_v5_gn_4_73000 Lactuca sativa HOM05D000033 ORTHO05D004097 1.3e-15 86.7 97 46.4
Potri.015G073500 Populus trichocarpa HOM05D000033 ORTHO05D004097 1.3e-15 86.7 83 51.8
Sabra12G0055900 Salix brachista HOM05D000033 ORTHO05D004097 1.3e-15 86.7 96 47.9
Migut.D01777 Erythranthe guttata HOM05D000033 ORTHO05D004097 1.7e-15 86.3 75 48.0
Phvul.009G180700 Phaseolus vulgaris HOM05D000033 ORTHO05D004097 2.2e-15 85.9 80 47.5
HanXRQChr09g0272331 Helianthus annuus HOM05D000033 ORTHO05D004097 2.9e-15 85.5 79 46.8
PGR044G1648 Punica granatum HOM05D000033 ORTHO05D004097 2.9e-15 85.5 65 55.4
Duzib147G1383 Durio zibethinus HOM05D000033 ORTHO05D004097 3.8e-15 85.1 86 48.8
ECA232G3977 Erigeron canadensis HOM05D000033 ORTHO05D004097 3.8e-15 85.1 97 47.4
CANSAT80G2692 Cannabis sativa HOM05D000033 ORTHO05D004097 5.0e-15 84.7 81 50.6
Glyma.06G184400 Glycine max HOM05D000033 ORTHO05D004097 5.0e-15 84.7 73 53.4
Lj1g0003826 Lotus japonicus HOM05D000033 ORTHO05D004097 5.0e-15 84.7 85 45.9
Haze_14651 Corylus avellana HOM05D000033 ORTHO05D004097 1.9e-14 82.8 99 43.4
Nitab4.5_0000015g0030 Nicotiana tabacum HOM05D000033 ORTHO05D004097 5.5e-14 81.3 101 42.6
Lj7A589T62 Lonicera japonica HOM05D000033 ORTHO05D004097 9.4e-14 80.5 79 45.6
VMungo1309G2007 Vigna mungo HOM05D000033 ORTHO05D004097 2.1e-13 79.3 75 48.0
Haze_07484 Corylus avellana HOM05D000033 ORTHO05D004097 2.7e-13 79.0 80 51.2
Lalb_Chr08g0236331 Lupinus albus HOM05D000033 ORTHO05D004097 3.6e-13 78.6 78 52.6
Aqoxy3G03047 Aquilegia oxysepala HOM05D000033 ORTHO05D004097 4.6e-13 78.2 65 52.3
CSS0032933 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D004097 4.6e-13 78.2 79 51.9
TPR.G24017 Trifolium pratense HOM05D000033 ORTHO05D004097 4.6e-13 78.2 67 50.7
Aqoxy3G03048 Aquilegia oxysepala HOM05D000033 ORTHO05D004097 6.1e-13 77.8 78 42.3
Peaxi162Scf00429g00013 Petunia axillaris HOM05D000033 ORTHO05D004097 6.1e-13 77.8 94 40.4
CSS0012143 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D004097 7.9e-13 77.4 79 46.8
ECA247G0244 Erigeron canadensis HOM05D000033 ORTHO05D004097 7.9e-13 77.4 60 51.7
MBI14_g41304_MAGBIO Magnolia biondii HOM05D000033 ORTHO05D004097 7.9e-13 77.4 78 41.0
Psat5g113400 Pisum sativum HOM05D000033 ORTHO05D004097 7.9e-13 77.4 67 49.3
Ca_16201_v3 Cicer arietinum L. HOM05D000033 ORTHO05D004097 2.3e-12 75.9 63 50.8
TWI12G0450 Tripterygium wilfordii HOM05D000033 ORTHO05D004097 3.0e-12 75.5 74 43.2
arahy.Tifrunner.gnm1.ann1.TB9JY1 Arachis hypogaea HOM05D000033 ORTHO05D004097 3.9e-12 75.1 65 50.8
arahy.Tifrunner.gnm1.ann1.TU6B9Y Arachis hypogaea HOM05D000033 ORTHO05D004097 3.9e-12 75.1 65 50.8
PSO017G0800 Papaver somniferum HOM05D000033 ORTHO05D004097 5.1e-12 74.7 77 48.1
Thecc.04G006400 Theobroma cacao HOM05D000033 ORTHO05D004097 5.1e-12 74.7 85 42.4
HPP92_016976 Vanilla planifolia HOM05D000033 ORTHO05D004097 5.1e-12 74.7 82 43.9
Actinidia36073 Actinidia chinensis HOM05D000033 ORTHO05D004097 6.7e-12 74.3 79 46.8
PSO478G4550 Papaver somniferum HOM05D000033 ORTHO05D004097 6.7e-12 74.3 77 46.8
MD09G1036300 Malus domestica HOM05D000033 ORTHO05D004097 1.1e-11 73.6 71 46.5
Actinidia33965 Actinidia chinensis HOM05D000033 ORTHO05D004097 1.5e-11 73.2 85 47.1
Cfa019089 Carpinus fangiana HOM05D000822 ORTHO05D008442 1.5e-11 73.2 80 50.0
Lj4g0025555 Lotus japonicus HOM05D000033 ORTHO05D004097 1.5e-11 73.2 78 48.7
DCAR_021673 Daucus carota HOM05D000033 ORTHO05D004097 2.0e-11 72.8 78 43.6
Eucgr.J02180 Eucalyptus grandis HOM05D000033 ORTHO05D004097 3.3e-11 72.0 70 47.1
Eucgr.K02865 Eucalyptus grandis HOM05D000033 ORTHO05D004097 3.3e-11 72.0 81 45.7
MD17G1037900 Malus domestica HOM05D000033 ORTHO05D004097 3.3e-11 72.0 84 41.7
vmacro16597 Vaccinium macrocarpon HOM05D000033 ORTHO05D004097 3.3e-11 72.0 79 45.6
Lalb_Chr07g0182641 Lupinus albus HOM05D000033 ORTHO05D004097 5.7e-11 71.2 78 44.9
Medtr3g078250 Medicago truncatula HOM05D000033 ORTHO05D004097 5.7e-11 71.2 67 47.8
Solyc11g071880.3 Solanum lycopersicum HOM05D000033 ORTHO05D004097 5.7e-11 71.2 88 42.0
arahy.Tifrunner.gnm1.ann1.VU7K38 Arachis hypogaea HOM05D000033 ORTHO05D004097 7.4e-11 70.9 83 37.3
Sopen11g029550 Solanum pennellii HOM05D000033 ORTHO05D004097 7.4e-11 70.9 88 42.0
Cpa.g.sc140.36 Carica papaya HOM05D000033 ORTHO05D004097 1.3e-10 70.1 85 42.4
Nitab4.5_0004762g0060 Nicotiana tabacum HOM05D000033 ORTHO05D004097 1.3e-10 70.1 64 48.4
arahy.Tifrunner.gnm1.ann1.X13C0W Arachis hypogaea HOM05D000033 ORTHO05D004097 2.2e-10 69.3 83 37.3
FAN09G2034 Fragaria x ananassa HOM05D000033 ORTHO05D004097 2.2e-10 69.3 86 40.7
Cpa.g.sc124.27 Carica papaya HOM05D000033 ORTHO05D004097 2.8e-10 68.9 56 55.4
PGSC0003DMG400003002 Solanum tuberosum HOM05D000033 ORTHO05D004097 2.8e-10 68.9 88 39.8
Cc07_g02440 Coffea canephora HOM05D000033 ORTHO05D004097 3.7e-10 68.6 74 50.0
Manes.17G123500 Manihot esculenta HOM05D000033 ORTHO05D004097 3.7e-10 68.6 86 43.0
Atru.chr6.2181 Acer truncatum HOM05D000033 ORTHO05D004097 4.8e-10 68.2 84 41.7
HanXRQChr15g0474511 Helianthus annuus HOM05D000033 ORTHO05D004097 4.8e-10 68.2 87 41.4
ATR1149G151 Amborella trichopoda HOM05D000033 ORTHO05D004097 6.3e-10 67.8 65 43.1
Glyma.11G176301 Glycine max HOM05D000033 ORTHO05D004097 6.3e-10 67.8 86 38.4
Lsat_1_v5_gn_0_5781 Lactuca sativa HOM05D000033 ORTHO05D004097 6.3e-10 67.8 101 36.6
Phvul.008G152500 Phaseolus vulgaris HOM05D000033 ORTHO05D004097 1.1e-09 67.0 85 36.5
HPP92_017320 Vanilla planifolia HOM05D000033 ORTHO05D004097 1.1e-09 67.0 79 40.5
Cpa.g.sc124.24 Carica papaya HOM05D000033 ORTHO05D004097 1.4e-09 66.6 67 44.8
CSS0022344 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D004097 1.8e-09 66.2 62 50.0
CAN.G742.35 Capsicum annuum HOM05D000033 ORTHO05D004097 3.1e-09 65.5 102 39.2
CiPaw.03G036100 Carya illinoinensis HOM05D000033 ORTHO05D004097 4.1e-09 65.1 85 40.0
TPR.G9931 Trifolium pratense HOM05D000033 ORTHO05D004097 6.9e-09 64.3 79 40.5
MBI15_g19748_MAGBIO Magnolia biondii HOM05D000033 ORTHO05D004097 9.1e-09 63.9 78 39.7
CANSAT64G1796 Cannabis sativa HOM05D000033 ORTHO05D004097 1.2e-08 63.5 65 44.6
VMungo1383G3100 Vigna mungo HOM05D000033 ORTHO05D004097 1.2e-08 63.5 85 36.5
Oeu017426.1 Olea europaea HOM05D000033 ORTHO05D004097 2.0e-08 62.8 74 44.6
Atru.chr6.2179 Acer truncatum HOM05D000033 ORTHO05D004097 7.7e-08 60.8 68 44.1
Ca_00659_v3 Cicer arietinum L. HOM05D000033 ORTHO05D004097 7.7e-08 60.8 80 37.5
Ca_00703_v3 Cicer arietinum L. HOM05D000033 ORTHO05D004097 7.7e-08 60.8 80 37.5
Peaxi162Scf00007g02852 Petunia axillaris HOM05D000570 ORTHO05D002740 7.7e-08 60.8 62 46.8
ECA246G2594 Erigeron canadensis HOM05D000033 ORTHO05D004097 1.0e-07 60.5 88 40.9
Sc08g0009080 Simmondsia chinensis HOM05D000033 ORTHO05D002890 1.3e-07 60.1 61 39.3
CANSAT11G1838 Cannabis sativa HOM05D000033 ORTHO05D010119 2.2e-07 59.3 61 45.9
TAR624G1216 Trochodendron aralioides HOM05D000033 ORTHO05D010119 2.2e-07 59.3 64 45.3
AUR62025295 Chenopodium quinoa HOM05D000033 ORTHO05D002890 2.9e-07 58.9 61 37.7
AUR62028301 Chenopodium quinoa HOM05D000033 ORTHO05D002890 2.9e-07 58.9 61 37.7
EL10Ac8g19007 Beta vulgaris HOM05D000033 ORTHO05D002890 6.5e-07 57.8 64 40.6
MD11G1205400 Malus domestica HOM05D000033 ORTHO05D010119 6.5e-07 57.8 59 44.1
Sed0010641 Sechium edule HOM05D000570 ORTHO05D002740 8.5e-07 57.4 64 43.8
Manes.03G137400 Manihot esculenta HOM05D000033 ORTHO05D010119 1.4e-06 56.6 64 42.2
SalBow1G4833 Salvia bowleyana HOM05D000033 ORTHO05D004097 1.9e-06 56.2 76 39.5
Solyc05g025780.4 Solanum lycopersicum HOM05D000033 ORTHO05D002890 1.9e-06 56.2 66 39.4
PGR083G2218 Punica granatum HOM05D000033 ORTHO05D004097 2.5e-06 55.8 79 36.7
CDE02G2571 Ceratophyllum demersum HOM05D005677 ORTHO05D006966 3.2e-06 55.5 70 45.7
ECA233G4738 Erigeron canadensis HOM05D000570 ORTHO05D002740 3.2e-06 55.5 65 41.5
Sopen07g028440 Solanum pennellii HOM05D000570 ORTHO05D002740 3.2e-06 55.5 62 43.5
Solyc07g054500.4 Solanum lycopersicum HOM05D000570 ORTHO05D002740 4.2e-06 55.1 62 43.5
CAN.G996.11 Capsicum annuum HOM05D000570 ORTHO05D002740 5.5e-06 54.7 64 42.2
HanXRQChr17g0559341 Helianthus annuus HOM05D000570 ORTHO05D002740 5.5e-06 54.7 64 42.2
Nitab4.5_0000024g0300 Nicotiana tabacum HOM05D000033 ORTHO05D002890 5.5e-06 54.7 78 39.7
Potri.011G088000 Populus trichocarpa HOM05D000033 ORTHO05D010119 5.5e-06 54.7 57 43.9
Dinv40831 Davidia involucrata HOM05D000033 ORTHO05D010119 9.4e-06 53.9 57 42.1


User provided reference genes

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