Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.2360 Acer truncatum HOM05D006327 ORTHO05D007952 2.9e-146 521.9 271 100.0
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 3.7e-53 212.6 259 52.5
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 4.9e-45 185.7 184 64.1
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 5.6e-41 172.2 182 60.4
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 7.3e-41 171.8 190 59.5
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 8.0e-40 168.3 184 60.3
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 2.4e-36 156.8 153 62.1
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 3.2e-36 156.4 178 56.7
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 9.2e-36 154.8 156 60.3
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 1.2e-35 154.5 171 56.1
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 2.1e-35 153.7 161 61.5
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 2.1e-35 153.7 194 53.6
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 6.0e-35 152.1 180 55.6
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 1.0e-34 151.4 185 53.0
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 1.7e-34 150.6 176 56.8
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 2.3e-34 150.2 201 51.7
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 2.3e-34 150.2 214 51.4
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 3.0e-34 149.8 201 51.7
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 3.9e-34 149.4 161 57.8
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 3.9e-34 149.4 207 51.7
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 5.1e-34 149.1 128 70.3
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 5.1e-34 149.1 140 65.7
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 8.6e-34 148.3 200 51.5
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 1.1e-33 147.9 158 59.5
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 1.1e-33 147.9 175 54.3
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 1.1e-33 147.9 184 53.3
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 1.5e-33 147.5 201 50.7
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.5e-33 147.5 151 59.6
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 3.3e-33 146.4 175 53.7
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 3.3e-33 146.4 219 49.8
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 4.3e-33 146.0 172 55.8
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 9.5e-33 144.8 204 50.5
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.6e-32 144.1 175 54.3
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 2.1e-32 143.7 151 58.9
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 3.6e-32 142.9 194 51.0
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 4.7e-32 142.5 170 55.9
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 4.7e-32 142.5 163 56.4
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 1.1e-31 141.4 175 54.9
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 1.4e-31 141.0 201 53.2
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 1.8e-31 140.6 156 60.3
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 3.1e-31 139.8 177 54.8
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 1.2e-30 137.9 163 55.2
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 2.6e-30 136.7 164 53.7
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 7.5e-30 135.2 164 53.0
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 1.7e-29 134.0 167 54.5
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 2.2e-29 133.7 163 55.2
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 4.1e-28 129.4 148 56.1
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 7.1e-28 128.6 171 54.4
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 7.1e-28 128.6 171 54.4
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 2.1e-27 127.1 189 50.3
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 3.5e-27 126.3 150 54.7
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.5e-27 126.3 209 46.4
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 4.6e-27 125.9 121 64.5
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 7.8e-27 125.2 152 55.3
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 1.7e-26 124.0 134 60.4
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 3.0e-26 123.2 201 48.8
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 3.9e-26 122.9 138 57.2
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 5.1e-26 122.5 170 51.2
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 2.5e-25 120.2 168 51.2
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 4.3e-25 119.4 130 60.0
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 1.2e-24 117.9 152 55.9
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 6.2e-24 115.5 192 50.0
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 1.4e-23 114.4 123 59.3
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 1.4e-23 114.4 199 44.2
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 8.9e-23 111.7 179 49.7
ECA247G1897 Erigeron canadensis HOM05D006327 ORTHO05D007881 1.2e-22 111.3 156 48.1
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 1.2e-22 111.3 164 49.4
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 1.5e-22 110.9 184 45.1
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 2.6e-22 110.2 170 50.6
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 1.2e-19 101.3 138 51.4
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 7.8e-19 98.6 160 48.1
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 1.3e-18 97.8 170 48.2
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 3.0e-18 96.7 159 49.7
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 3.9e-18 96.3 172 45.9
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 3.9e-18 96.3 164 48.8
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 5.1e-18 95.9 173 46.2
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 6.6e-18 95.5 149 49.7
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 8.7e-18 95.1 183 44.3
Hund02693 Selenicereus undatus HOM05D006327 ORTHO05D007952 1.9e-17 94.0 172 43.0
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 5.6e-17 92.4 91 62.6
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 9.6e-17 91.7 172 44.2
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 2.8e-16 90.1 150 49.3
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 4.7e-16 89.4 132 48.5
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 8.1e-16 88.6 156 47.4
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 8.1e-16 88.6 156 47.4
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 3.1e-15 86.7 156 46.8
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 3.1e-15 86.7 156 46.8
ATR0665G137 Amborella trichopoda HOM05D006327 ORTHO05D007952 4.0e-15 86.3 128 44.5
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 4.0e-15 86.3 146 47.9
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 9.0e-15 85.1 147 46.9
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 1.5e-14 84.3 144 47.9
BcaB05g23082 Brassica carinata HOM05D006327 ORTHO05D007952 5.8e-14 82.4 131 48.9
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 1.4e-12 77.8 134 46.3
Actinidia19065 Actinidia chinensis HOM05D006327 ORTHO05D007952 7.8e-11 72.0 80 56.2
Os05g0220900 Oryza sativa ssp. japonica HOM05D006327 ORTHO05D007952 1.9e-09 67.4 172 39.0
Zm00001eb053670 Zea mays HOM05D006327 ORTHO05D007952 4.3e-09 66.2 149 38.3
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 2.1e-08 63.9 125 40.0
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 3.6e-08 63.2 118 42.4
HPP92_015937 Vanilla planifolia HOM05D006327 ORTHO05D007952 3.6e-08 63.2 128 37.5
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 6.2e-08 62.4 123 43.1
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 2.0e-06 57.4 152 35.5
Aa31LG4G16510 Aethionema arabicum HOM05D006327 ORTHO05D007952 5.8e-06 55.8 154 40.3


User provided reference genes

Program Settings