Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 7.1e-150 533.9 264 100.0
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 4.1e-113 411.8 255 83.5
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.2e-93 347.1 255 68.6
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 4.7e-93 345.1 236 75.0
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 1.8e-92 343.2 236 72.9
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 3.0e-92 342.4 255 68.2
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 4.0e-92 342.0 215 84.7
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 8.8e-92 340.9 215 84.2
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 8.8e-92 340.9 255 68.2
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 2.6e-91 339.3 254 68.1
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 4.4e-91 338.6 259 67.6
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 6.3e-90 334.7 254 68.1
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 1.8e-89 333.2 236 72.5
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 2.4e-89 332.8 236 73.3
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 1.2e-88 330.5 251 67.3
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 2.0e-88 329.7 244 70.1
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 3.5e-88 328.9 233 72.1
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 4.5e-88 328.6 255 66.7
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 4.5e-88 328.6 233 70.0
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 1.7e-87 326.6 236 70.3
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 2.2e-87 326.2 240 68.8
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 2.9e-87 325.9 255 65.9
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.5e-87 324.7 240 70.0
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 1.9e-86 323.2 240 69.6
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 1.9e-86 323.2 233 70.0
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.5e-86 322.8 240 69.6
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 5.5e-86 321.6 255 65.9
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 1.2e-85 320.5 234 68.8
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 2.1e-85 319.7 242 68.2
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 1.0e-84 317.4 233 67.4
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.4e-84 317.0 255 64.7
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 1.8e-84 316.6 255 65.9
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 2.3e-84 316.2 255 63.9
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 2.3e-84 316.2 255 65.5
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 5.2e-84 315.1 253 63.6
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.8e-84 314.7 240 67.1
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 8.8e-84 314.3 254 65.0
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 3.4e-83 312.4 237 67.5
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 3.4e-83 312.4 245 65.7
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 9.8e-83 310.8 253 62.1
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 1.3e-82 310.5 239 66.5
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 2.2e-82 309.7 233 65.7
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 3.7e-82 308.9 236 66.9
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 3.7e-82 308.9 240 67.5
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 4.9e-82 308.5 253 63.6
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 4.9e-82 308.5 255 62.4
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 8.3e-82 307.8 239 65.7
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 8.3e-82 307.8 242 65.3
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 1.1e-81 307.4 239 66.5
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 4.1e-81 305.4 230 67.0
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 4.1e-81 305.4 233 69.1
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 4.1e-81 305.4 241 64.3
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 5.4e-81 305.1 239 66.1
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 7.0e-81 304.7 235 67.2
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 7.0e-81 304.7 233 67.8
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 1.2e-80 303.9 239 64.4
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 1.6e-80 303.5 233 67.4
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 1.0e-79 300.8 241 63.5
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 2.9e-79 299.3 247 61.1
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 1.1e-78 297.4 239 64.9
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 1.5e-78 297.0 248 59.7
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 1.5e-78 297.0 248 59.7
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 1.5e-78 297.0 237 65.8
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 1.5e-78 297.0 233 63.9
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 1.9e-78 296.6 248 59.7
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 7.3e-78 294.7 252 58.3
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 7.3e-78 294.7 248 59.3
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 9.5e-78 294.3 235 63.0
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 1.2e-77 293.9 254 58.3
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.2e-77 293.9 247 59.9
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 2.1e-77 293.1 248 59.7
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 2.8e-77 292.7 247 59.1
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 2.8e-77 292.7 233 63.5
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 3.6e-77 292.4 247 58.3
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 3.6e-77 292.4 256 57.8
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 4.7e-77 292.0 248 58.9
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 6.1e-77 291.6 247 59.5
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 6.1e-77 291.6 297 53.5
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 8.0e-77 291.2 248 58.1
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 8.0e-77 291.2 247 58.7
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 1.4e-76 290.4 228 62.7
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 1.4e-76 290.4 254 57.5
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 1.8e-76 290.0 247 58.3
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 1.8e-76 290.0 254 57.5
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 2.3e-76 289.7 254 57.5
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 4.0e-76 288.9 233 63.5
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 6.8e-76 288.1 254 57.1
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 6.8e-76 288.1 254 57.1
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 6.8e-76 288.1 254 57.9
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 1.5e-75 287.0 252 57.9
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 1.5e-75 287.0 214 70.1
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 5.7e-75 285.0 247 57.5
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 7.5e-75 284.6 253 56.5
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 2.2e-74 283.1 256 57.8
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 2.9e-74 282.7 257 57.2
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 3.7e-74 282.3 254 57.1
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 3.7e-74 282.3 238 61.3
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 1.1e-73 280.8 209 69.9
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 2.7e-72 276.2 254 55.9
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 5.9e-72 275.0 252 57.1
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 1.0e-71 274.2 252 55.6
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 8.6e-71 271.2 242 59.9
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 1.1e-70 270.8 252 56.3
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 2.1e-69 266.5 252 55.6
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 5.2e-68 261.9 235 59.6
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 4.9e-66 255.4 225 56.9
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 1.4e-65 253.8 230 56.1
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 1.9e-65 253.4 233 54.9
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.4e-65 253.1 248 54.0
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 2.4e-65 253.1 214 62.6
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 4.1e-65 252.3 248 53.2
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 1.8e-60 236.9 239 52.3
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 4.0e-60 235.7 201 59.2
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 1.9e-57 226.9 254 46.1
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 1.2e-56 224.2 175 68.0
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 1.6e-56 223.8 208 55.8
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 6.0e-56 221.9 254 44.9
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 2.3e-55 219.9 219 53.0
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 3.3e-54 216.1 202 59.4
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 2.3e-52 209.9 226 53.5
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 1.5e-51 207.2 211 53.6
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 2.2e-50 203.4 226 49.6
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 1.1e-49 201.1 202 53.5
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 1.1e-49 201.1 259 46.7
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 1.4e-44 184.1 155 59.4
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 8.4e-42 174.9 253 39.9
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 5.4e-41 172.2 243 40.3
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 7.1e-41 171.8 152 56.6
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.4e-36 157.5 209 45.0
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.4e-36 157.5 128 60.9
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 1.8e-36 157.1 190 47.4
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.3e-31 140.2 107 64.5
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 3.1e-28 129.8 85 75.3
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 2.2e-26 123.6 196 41.3
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 5.5e-25 119.0 93 67.7
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 1.1e-22 111.3 66 75.8
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 1.6e-21 107.5 60 85.0
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 5.3e-20 102.4 69 62.3
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 1.2e-19 101.3 121 47.9
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 1.2e-19 101.3 69 62.3
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 1.7e-18 97.4 64 65.6
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 2.9e-18 96.7 114 49.1
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 2.9e-18 96.7 117 47.9
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 3.0e-15 86.7 113 40.7
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 4.1e-12 76.3 49 63.3
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 6.9e-12 75.5 64 60.9
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 2.1e-08 63.9 53 58.5
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 3.6e-08 63.2 44 63.6
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 4.6e-08 62.8 56 57.1
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 1.3e-07 61.2 64 50.0
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-07 61.2 45 57.8
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 5.1e-07 59.3 47 57.4


User provided reference genes

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