Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.2311 Acer truncatum HOM05D000881 ORTHO05D000666 5.8e-209 730.7 385 100.0
Atru.chr9.2312 Acer truncatum HOM05D000881 ORTHO05D000666 6.4e-59 232.3 221 62.0
Ciclev10021984m.g Citrus clementina HOM05D000881 ORTHO05D000666 2.2e-38 164.1 235 43.4
Ca_21846_v3 Cicer arietinum L. HOM05D000259 ORTHO05D000155 2.9e-27 127.1 202 38.1
Lalb_Chr12g0196721 Lupinus albus HOM05D000881 ORTHO05D000666 8.5e-27 125.6 208 41.3
Manes.14G075100 Manihot esculenta HOM05D000881 ORTHO05D000666 2.5e-26 124.0 224 39.3
MD06G1188500 Malus domestica HOM05D000881 ORTHO05D000666 7.2e-26 122.5 232 39.2
Glyma.05G029500 Glycine max HOM05D000881 ORTHO05D000666 1.1e-23 115.2 233 36.5
Medtr4g107860 Medicago truncatula HOM05D000881 ORTHO05D000666 2.0e-23 114.4 258 32.6
MD14G1195100 Malus domestica HOM05D000881 ORTHO05D000666 5.7e-23 112.8 212 39.6
TPR.G38378 Trifolium pratense HOM05D000881 ORTHO05D000666 1.3e-22 111.7 241 32.8
arahy.Tifrunner.gnm1.ann1.1N783C Arachis hypogaea HOM05D000881 ORTHO05D000666 3.7e-22 110.2 238 34.0
Prupe.5G186800 Prunus persica HOM05D000881 ORTHO05D000666 3.7e-22 110.2 226 37.6
Duzib068G0091 Durio zibethinus HOM05D000881 ORTHO05D000666 8.2e-22 109.0 216 38.0
Potri.015G064800 Populus trichocarpa HOM05D000881 ORTHO05D000666 1.1e-21 108.6 212 37.7
arahy.Tifrunner.gnm1.ann1.IYC01E Arachis hypogaea HOM05D000881 ORTHO05D000666 3.1e-21 107.1 237 33.3
Lj4g0004603 Lotus japonicus HOM05D000881 ORTHO05D000666 5.3e-21 106.3 214 34.6
Potri.012G070100 Populus trichocarpa HOM05D000881 ORTHO05D000666 7.0e-21 105.9 200 39.5
CANSAT80G1763 Cannabis sativa HOM05D000881 ORTHO05D000666 1.6e-20 104.8 216 34.3
QL10p015652 Quercus lobata HOM05D000881 ORTHO05D000666 2.6e-20 104.0 234 37.2
Haze_07375 Corylus avellana HOM05D000881 ORTHO05D000666 2.9e-19 100.5 242 33.9
Thecc.03G079800 Theobroma cacao HOM05D000881 ORTHO05D000666 2.9e-19 100.5 211 35.5
CiPaw.11G038700 Carya illinoinensis HOM05D000881 ORTHO05D000666 3.2e-18 97.1 209 36.8
Glyma.17G097400 Glycine max HOM05D000881 ORTHO05D000666 4.2e-18 96.7 257 31.9
Sabra15G0090400 Salix brachista HOM05D000136 ORTHO05D000666 4.2e-18 96.7 209 37.8
Phvul.009G189900 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 7.2e-18 95.9 221 34.4
VMungo1309G1551 Vigna mungo HOM05D000881 ORTHO05D000666 9.4e-18 95.5 209 37.8
MD14G1194900 Malus domestica HOM05D000881 ORTHO05D000666 1.6e-17 94.7 140 44.3
Thecc.03G079700 Theobroma cacao HOM05D000881 ORTHO05D000666 1.6e-17 94.7 202 34.7
Sopen03g032240 Solanum pennellii HOM05D000881 ORTHO05D000666 2.7e-17 94.0 218 36.2
Solyc03g113180.3 Solanum lycopersicum HOM05D000881 ORTHO05D000666 3.6e-17 93.6 215 34.9
HanXRQChr16g0503201 Helianthus annuus HOM05D000881 ORTHO05D000666 4.7e-17 93.2 237 32.1
Aqoxy3G03278 Aquilegia oxysepala HOM05D000881 ORTHO05D000666 6.1e-17 92.8 275 32.0
Eucgr.K02451 Eucalyptus grandis HOM05D000881 ORTHO05D000666 1.0e-16 92.0 205 37.1
Glyma.06G190600 Glycine max HOM05D000881 ORTHO05D000666 1.4e-16 91.7 210 36.2
Psat4g053640 Pisum sativum HOM05D000881 ORTHO05D000666 1.8e-16 91.3 255 29.8
Cfa018986 Carpinus fangiana HOM05D000881 ORTHO05D000666 3.0e-16 90.5 262 32.4
FAN13G2453 Fragaria x ananassa HOM05D000881 ORTHO05D000666 3.0e-16 90.5 227 32.2
ECA232G2750 Erigeron canadensis HOM05D000259 ORTHO05D000155 4.0e-16 90.1 112 48.2
HanXRQChr16g0503171 Helianthus annuus HOM05D000881 ORTHO05D000666 6.7e-16 89.4 257 31.1
FAN04G1140 Fragaria x ananassa HOM05D000881 ORTHO05D000666 8.8e-16 89.0 227 31.7
Phvul.003G192400 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 8.8e-16 89.0 239 33.1
DCAR_016535 Daucus carota HOM05D000881 ORTHO05D000666 1.5e-15 88.2 322 30.1
Cc04_g15480 Coffea canephora HOM05D000881 ORTHO05D000666 2.6e-15 87.4 210 35.7
RcHm_v2.0_Chr7g0180641 Rosa chinensis HOM05D000881 ORTHO05D000666 2.6e-15 87.4 253 30.0
Peaxi162Scf00009g00337 Petunia axillaris HOM05D000881 ORTHO05D000666 5.7e-15 86.3 200 36.5
Lsat_1_v5_gn_4_107421 Lactuca sativa HOM05D000881 ORTHO05D000666 7.5e-15 85.9 233 33.5
FvH4_5g15440 Fragaria vesca HOM05D000881 ORTHO05D000666 1.3e-14 85.1 222 34.2
Oeu022198.1 Olea europaea HOM05D000881 ORTHO05D000666 1.3e-14 85.1 236 33.1
Dinv19919 Davidia involucrata HOM05D000881 ORTHO05D000666 4.8e-14 83.2 165 38.2
PSO591G0061 Papaver somniferum HOM05D000881 ORTHO05D000666 6.3e-14 82.8 107 43.9
PSO832G1594 Papaver somniferum HOM05D000881 ORTHO05D000666 1.1e-13 82.0 114 44.7
FAN18G0931 Fragaria x ananassa HOM05D000881 ORTHO05D000666 1.4e-13 81.6 215 34.4
PGSC0003DMG400025350 Solanum tuberosum HOM05D000881 ORTHO05D000666 2.4e-13 80.9 210 33.3
CSS0047115 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 3.1e-13 80.5 123 39.0
PGR044G0518 Punica granatum HOM05D000881 ORTHO05D000666 3.1e-13 80.5 204 32.8
Actinidia34978 Actinidia chinensis HOM05D000881 ORTHO05D000666 9.1e-13 79.0 128 37.5
Duzib068G0675 Durio zibethinus HOM05D000881 ORTHO05D000666 9.1e-13 79.0 205 36.1
CDE04G3685 Ceratophyllum demersum HOM05D000881 ORTHO05D000666 1.2e-12 78.6 239 29.7
VMungo1215G2490 Vigna mungo HOM05D000259 ORTHO05D000155 1.2e-12 78.6 285 28.4
CiPaw.11G038800 Carya illinoinensis HOM05D000881 ORTHO05D000666 5.9e-12 76.3 211 30.8
TWI60G1130 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 7.7e-12 75.9 105 42.9
MBI14_g12734_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 1.3e-11 75.1 128 36.7
HanXRQChr09g0271101 Helianthus annuus HOM05D000881 ORTHO05D000666 2.2e-11 74.3 102 41.2
Rhsim12G0159300 Rhododendron simsii HOM05D000881 ORTHO05D000666 2.9e-11 73.9 125 40.0
Sc04g0002460 Simmondsia chinensis HOM05D000881 ORTHO05D000666 3.8e-11 73.6 206 31.1
vmacro16567 Vaccinium macrocarpon HOM05D000881 ORTHO05D000666 3.8e-11 73.6 139 38.1
Nitab4.5_0004605g0030 Nicotiana tabacum HOM05D000881 ORTHO05D000666 1.1e-10 72.0 96 46.9
TWI81G0343 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 1.5e-10 71.6 110 37.3
Nn4g23057 Nelumbo nucifera HOM05D000881 ORTHO05D000666 1.9e-10 71.2 114 38.6
Nitab4.5_0000785g0230 Nicotiana tabacum HOM05D000881 ORTHO05D000666 5.5e-10 69.7 209 33.0
CiPaw.11G038600 Carya illinoinensis HOM05D000881 ORTHO05D000666 8.0e-09 65.9 93 40.9
FAN08G1722 Fragaria x ananassa HOM05D000881 ORTHO05D000666 2.3e-08 64.3 237 30.4
Oeu022199.1 Olea europaea HOM05D000881 ORTHO05D000666 8.8e-08 62.4 166 30.1
CAN.G1711.7 Capsicum annuum HOM05D000881 ORTHO05D000666 1.2e-07 62.0 208 29.3
HPP92_028054 Vanilla planifolia HOM05D000881 ORTHO05D000666 1.2e-07 62.0 108 38.0
Prupe.5G186700 Prunus persica HOM05D000881 ORTHO05D000666 2.6e-07 60.8 249 28.1
LjContig00564g0024719 Lotus japonicus HOM05D000881 ORTHO05D000666 4.4e-07 60.1 106 31.1
Cpa.g.sc17.209 Carica papaya HOM05D000881 ORTHO05D000666 9.8e-07 58.9 167 32.3
HPP92_011475 Vanilla planifolia HOM05D000881 ORTHO05D000666 9.8e-07 58.9 245 25.3
A10p31260 Brassica napus HOM05D000881 ORTHO05D000666 1.3e-06 58.5 297 23.2
SalBow6G6574 Salvia bowleyana HOM05D000125 ORTHO05D000120 1.3e-06 58.5 92 34.8
Sp6g37930 Schrenkiella parvula HOM05D000881 ORTHO05D000666 1.3e-06 58.5 123 30.1
AT5G20970 Arabidopsis thaliana HOM05D000881 ORTHO05D000666 1.7e-06 58.2 101 30.7
Thhalv10014066m.g Eutrema salsugineum HOM05D000881 ORTHO05D000666 2.2e-06 57.8 106 32.1
Gohir.A12G175310 Gossypium hirsutum HOM05D000881 ORTHO05D000666 2.2e-06 57.8 95 32.6
BcaC04g19495 Brassica carinata HOM05D000881 ORTHO05D000666 2.8e-06 57.4 80 36.2
C09p55080 Brassica napus HOM05D000881 ORTHO05D000666 2.8e-06 57.4 80 36.2
BolC9t58372H Brassica oleracea HOM05D000881 ORTHO05D000666 2.8e-06 57.4 80 36.2
arahy.Tifrunner.gnm1.ann1.ED5JXQ Arachis hypogaea HOM05D000881 ORTHO05D000666 3.7e-06 57.0 94 34.0
Carub.0006s0381 Capsella rubella HOM05D000881 ORTHO05D000666 3.7e-06 57.0 106 34.0
Gohir.D12G178364 Gossypium hirsutum HOM05D000881 ORTHO05D000666 3.7e-06 57.0 95 31.6
VMungo1309G2673 Vigna mungo HOM05D000881 ORTHO05D000666 3.7e-06 57.0 98 30.6
AL6G14570 Arabidopsis lyrata HOM05D000881 ORTHO05D000666 4.8e-06 56.6 106 34.0
BcaNung05155 Brassica carinata HOM05D000881 ORTHO05D000666 4.8e-06 56.6 116 30.2
Thhalv10014544m.g Eutrema salsugineum HOM05D000881 ORTHO05D000666 4.8e-06 56.6 101 29.7
Gorai.008G190800 Gossypium raimondii HOM05D000881 ORTHO05D000666 4.8e-06 56.6 95 31.6
Lalb_Chr10g0105781 Lupinus albus HOM05D000881 ORTHO05D000666 4.8e-06 56.6 95 32.6
Sabra04G0129800 Salix brachista HOM05D000881 ORTHO05D000666 4.8e-06 56.6 152 29.6
unitig_0.g2304 Utricularia gibba HOM05D000881 ORTHO05D000080 4.8e-06 56.6 102 30.4
GSVIVG01008056001 Vitis vinifera HOM05D000881 ORTHO05D000666 4.8e-06 56.6 66 48.5
AL6G32540 Arabidopsis lyrata HOM05D000881 ORTHO05D000666 6.3e-06 56.2 101 29.7
CARHR208380 Cardamine hirsuta HOM05D000881 ORTHO05D000080 6.3e-06 56.2 162 29.0
SalBow5G4899 Salvia bowleyana HOM05D000881 ORTHO05D000666 6.3e-06 56.2 173 30.6
BcaB05g22794 Brassica carinata HOM05D000881 ORTHO05D000666 8.3e-06 55.8 108 29.6
A10p19060 Brassica napus HOM05D000881 ORTHO05D000666 8.3e-06 55.8 80 35.0
BraA10t45169Z Brassica rapa HOM05D000881 ORTHO05D000666 8.3e-06 55.8 123 30.1
CDE04G2129 Ceratophyllum demersum HOM05D000881 ORTHO05D000666 8.3e-06 55.8 119 35.3
DCAR_006194 Daucus carota HOM05D000881 ORTHO05D000666 8.3e-06 55.8 111 29.7
TAR374G1506 Trochodendron aralioides HOM05D000881 ORTHO05D000666 8.3e-06 55.8 211 30.8


User provided reference genes

Program Settings