Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 2159.8 1145 100.0
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1566.2 1144 73.3
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1383.2 1158 64.5
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1372.5 1178 63.3
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1367.8 1172 64.8
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1365.1 1191 63.6
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1364.4 1191 62.9
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 1361.3 1017 67.2
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1356.3 1167 63.0
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1354.3 1155 63.7
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1350.9 1156 63.4
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1347.0 1169 63.7
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1343.2 1173 63.6
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1338.9 1172 63.1
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1337.0 1019 67.6
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1337.0 1267 58.4
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1335.5 1157 62.9
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1328.9 1171 61.9
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1319.3 1014 65.9
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1316.2 1171 62.4
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1314.7 1169 62.4
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1310.4 1174 62.1
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1309.3 1180 60.4
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1309.3 1179 63.0
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1308.9 1180 59.5
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1308.5 1220 59.8
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 1306.2 1177 60.1
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1305.0 1178 59.8
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1294.6 1170 60.3
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 1292.3 1157 60.4
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1291.2 1014 64.7
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 1290.4 1172 60.4
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1289.6 1026 64.1
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 1285.0 1172 60.3
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 1281.9 1176 60.4
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1278.8 1168 60.9
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 1276.9 1179 59.2
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1276.2 1162 61.4
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1272.3 1181 59.8
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 1268.1 1172 58.9
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1266.1 1166 59.4
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1259.2 1200 59.2
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 1251.9 1173 58.5
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 1245.7 1182 58.2
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1236.5 1026 60.7
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1230.7 1150 57.7
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1229.2 1163 56.7
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1228.0 1222 56.5
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 0.0e+00 1221.1 1130 59.1
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 1220.3 1184 57.9
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 0.0e+00 1214.1 1634 46.9
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1211.8 1163 57.3
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 0.0e+00 1211.4 1343 54.2
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 1203.7 1125 58.5
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1201.4 946 66.0
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1192.9 1164 56.7
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 0.0e+00 1190.3 1124 57.7
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 0.0e+00 1176.8 1043 58.4
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1170.2 1085 60.7
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 0.0e+00 1164.8 1160 54.9
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 0.0e+00 1161.0 1014 57.7
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 0.0e+00 1161.0 1156 55.7
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1152.9 1170 54.5
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1150.2 1135 57.6
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 0.0e+00 1150.2 1135 57.6
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 0.0e+00 1149.4 1139 55.0
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 0.0e+00 1147.9 1020 58.0
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 0.0e+00 1147.5 1147 56.8
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 0.0e+00 1144.4 1145 55.9
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 0.0e+00 1142.5 1159 55.9
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 0.0e+00 1142.1 1159 56.4
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 0.0e+00 1140.6 1141 55.1
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1129.4 1152 55.3
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1125.9 1122 54.5
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 0.0e+00 1120.9 1179 53.5
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1120.9 1153 55.9
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1110.1 996 58.5
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 0.0e+00 1097.0 1133 55.3
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 0.0e+00 1090.1 1159 53.2
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 0.0e+00 1081.2 1054 56.1
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 1.9e-308 1062.8 1148 52.4
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 5.0e-301 1038.1 1024 53.2
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 2.7e-286 989.2 1246 47.8
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 4.1e-279 965.3 1152 46.4
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 2.1e-275 953.0 1142 48.2
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 2.1e-270 936.4 1149 47.1
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 2.0e-257 893.3 963 52.5
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 1.2e-249 867.5 1175 44.9
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 1.9e-244 850.1 715 59.2
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 1.9e-236 823.5 730 59.6
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.6e-230 803.9 847 54.9
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 1.6e-222 777.3 1067 44.2
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 2.1e-222 776.9 640 61.4
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 6.1e-214 748.8 664 59.0
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 8.0e-214 748.4 656 59.3
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 6.5e-200 702.2 667 57.0
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 6.1e-198 695.7 782 52.0
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 3.9e-184 649.8 1040 38.8
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 3.4e-180 636.7 976 38.4
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 5.8e-180 636.0 487 65.5
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 1.3e-168 598.2 1020 35.4
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 1.5e-164 584.7 1049 36.0
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 1.4e-157 561.6 1034 35.5
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 1.2e-129 468.8 1227 30.8
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 9.7e-111 406.0 428 53.3
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 1.4e-88 332.4 382 52.9
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 9.8e-55 219.9 275 40.4
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 1.3e-54 219.5 178 60.7
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 1.3e-38 166.4 115 69.6
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 7.4e-26 124.0 524 25.0
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 4.8e-17 94.7 107 43.9
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 1.4e-16 93.2 166 35.5
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 2.6e-15 89.0 71 60.6
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 2.1e-09 69.3 47 70.2
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 2.8e-09 68.9 60 60.0
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 9.0e-08 63.9 40 70.0
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 2.0e-07 62.8 37 78.4
SGA_v2.0_scaffold100G29654 Striga asiatica HOM05D006302 ORTHO05D007960 2.6e-07 62.4 34 85.3
Medtr6g072310 Medicago truncatula HOM05D000005 ORTHO05D000012 1.3e-06 60.1 75 45.3
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 2.2e-06 59.3 68 45.6
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 6.5e-06 57.8 42 61.9


User provided reference genes

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