Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 2.7e-274 948.0 450 100.0
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 3.8e-236 821.2 452 86.3
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 8.7e-233 810.1 453 83.7
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 9.7e-232 806.6 453 83.7
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 2.0e-229 798.9 460 82.0
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 4.5e-229 797.7 467 80.5
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 5.9e-229 797.3 457 82.9
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 5.9e-229 797.3 457 82.9
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.2e-226 789.6 457 81.4
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 1.6e-226 789.3 456 82.0
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 3.9e-225 784.6 459 80.8
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 3.3e-224 781.6 453 80.4
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 7.4e-224 780.4 458 81.7
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 7.4e-224 780.4 456 80.9
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 1.3e-223 779.6 453 79.9
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 2.8e-223 778.5 456 81.6
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 5.3e-222 774.2 451 80.9
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 5.3e-222 774.2 454 81.3
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 9.1e-222 773.5 455 80.9
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 1.2e-221 773.1 455 80.4
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 1.2e-221 773.1 449 81.5
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 2.0e-221 772.3 457 79.9
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 2.2e-220 768.8 456 78.7
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 8.5e-220 766.9 457 78.8
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 1.1e-219 766.5 451 79.6
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 2.5e-219 765.4 459 78.9
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 5.5e-219 764.2 452 79.6
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 2.7e-218 761.9 456 78.1
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 1.0e-217 760.0 459 79.3
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 2.8e-215 751.9 456 77.4
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 3.7e-215 751.5 456 78.7
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 2.4e-214 748.8 444 80.4
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 5.9e-213 744.2 458 76.6
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 3.2e-211 738.4 445 78.7
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.1e-210 735.7 458 76.2
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 1.4e-209 733.0 453 75.3
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 3.0e-209 731.9 444 78.4
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 5.2e-209 731.1 446 76.7
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 2.6e-208 728.8 449 77.7
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 1.7e-207 726.1 453 75.3
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 6.3e-207 724.2 454 76.9
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 8.2e-207 723.8 455 74.9
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 1.4e-206 723.0 435 78.9
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 3.5e-205 718.4 456 74.6
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 7.7e-205 717.2 426 78.9
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.3e-204 716.5 462 74.9
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 2.9e-204 715.3 426 79.6
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 3.8e-204 714.9 453 73.7
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 5.0e-204 714.5 455 73.0
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.0e-204 714.5 427 78.9
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 6.5e-204 714.1 458 73.6
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 8.5e-204 713.8 431 77.0
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 1.1e-203 713.4 430 78.6
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 1.9e-203 712.6 458 73.4
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 5.5e-203 711.1 453 75.3
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 9.4e-203 710.3 458 73.1
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 1.2e-202 709.9 429 77.4
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.7e-202 708.8 447 75.6
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.6e-202 708.4 463 74.3
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 4.7e-202 708.0 429 77.9
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 1.4e-201 706.4 455 73.6
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.4e-201 706.4 448 75.7
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 5.2e-201 704.5 426 77.2
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 1.3e-199 699.9 426 76.8
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.7e-199 699.5 452 73.9
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 2.2e-199 699.1 461 73.3
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 4.8e-199 698.0 438 77.9
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 8.3e-199 697.2 451 73.4
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 3.1e-198 695.3 451 72.3
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 3.5e-197 691.8 473 70.2
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 4.5e-197 691.4 457 72.4
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 3.3e-195 685.3 446 72.9
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 5.5e-195 684.5 450 71.1
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 4.7e-194 681.4 456 72.6
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 1.2e-192 676.8 483 70.0
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 1.5e-192 676.4 465 70.8
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.4e-190 669.8 408 77.2
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 1.4e-190 669.8 394 79.7
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 9.2e-190 667.2 491 65.8
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 1.3e-188 663.3 453 67.1
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 1.7e-188 662.9 461 69.0
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.1e-187 660.2 454 68.1
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.9e-187 659.4 454 67.6
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 1.6e-186 656.4 454 68.1
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 2.8e-186 655.6 455 67.5
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 8.0e-186 654.1 469 66.7
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 1.8e-185 652.9 458 67.2
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 5.2e-185 651.4 458 67.2
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 3.4e-184 648.7 456 66.7
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 5.8e-184 647.9 459 66.2
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 9.8e-184 647.1 458 66.8
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 2.9e-183 645.6 458 66.6
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 2.9e-183 645.6 458 66.6
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.1e-182 643.7 364 81.9
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 9.2e-182 640.6 458 66.6
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 1.6e-181 639.8 461 68.1
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 1.2e-178 630.2 461 67.5
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.6e-178 629.8 456 66.9
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 4.4e-176 621.7 392 74.2
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 9.8e-176 620.5 450 66.7
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 8.3e-175 617.5 384 76.8
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 1.6e-173 613.2 469 63.3
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.6e-170 602.1 437 68.4
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.4e-169 600.1 536 58.4
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 1.8e-169 599.7 428 64.7
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 5.2e-169 598.2 473 64.1
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 2.6e-168 595.9 486 60.9
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 5.4e-166 588.2 380 75.0
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 7.8e-165 584.3 403 68.7
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 4.3e-163 578.6 424 65.6
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 1.2e-162 577.0 421 69.1
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 7.8e-157 557.8 430 60.0
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 7.3e-155 551.2 453 58.5
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 1.2e-152 543.9 434 57.8
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 2.0e-152 543.1 435 57.5
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 4.0e-145 518.8 351 70.9
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 1.3e-140 503.8 423 58.4
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 3.7e-138 495.7 479 54.7
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 1.6e-133 480.3 480 52.5
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 1.6e-130 470.3 290 77.9
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 5.5e-126 455.3 346 62.1
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 7.1e-126 454.9 346 61.6
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.5e-123 446.4 456 55.7
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 6.3e-122 441.8 290 71.7
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 4.1e-121 439.1 334 68.0
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.2e-118 429.5 418 56.0
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 1.2e-117 427.6 268 76.1
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 1.8e-105 387.1 376 50.0
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 8.2e-98 361.7 408 43.9
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 1.2e-96 357.8 204 77.9
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 5.0e-95 352.4 434 41.7
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 5.5e-86 322.4 214 76.2
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 1.6e-85 320.9 277 62.5
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 7.0e-73 278.9 175 78.3
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 3.5e-56 223.4 221 57.5
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 5.1e-55 219.5 184 59.2
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.5e-54 218.0 119 82.4
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 4.7e-53 213.0 225 49.8
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 6.8e-44 182.6 241 47.7
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.6e-43 180.6 239 47.7
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 9.9e-43 178.7 155 57.4
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 2.9e-42 177.2 231 43.7
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 2.1e-40 171.0 109 73.4
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 6.2e-37 159.5 90 78.9
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 1.1e-36 158.7 196 45.9
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 4.9e-34 149.8 94 77.7
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.9e-30 137.9 239 41.0
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.8e-26 123.6 85 67.1
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 5.1e-23 113.2 62 80.6
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 6.7e-23 112.8 71 70.4
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 4.0e-20 103.6 129 41.9
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 1.3e-18 98.6 70 71.4
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 1.2e-11 75.5 61 63.9
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.3e-10 72.0 79 51.9
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.5e-09 67.8 36 83.3
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.0e-07 62.4 42 64.3


User provided reference genes

Program Settings