Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 2.4e-34 148.3 75 100.0
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.6e-17 92.4 76 67.1
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 2.0e-17 92.0 65 70.8
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 6.5e-16 87.0 69 69.6
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.1e-15 86.3 68 60.3
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 1.2e-14 82.8 70 68.6
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 2.1e-14 82.0 70 67.1
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 2.7e-14 81.6 72 59.7
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 1.0e-13 79.7 68 55.9
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 1.8e-13 79.0 70 64.3
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 1.8e-13 79.0 72 58.3
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 5.2e-13 77.4 70 62.9
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 6.8e-13 77.0 79 55.7
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 8.8e-13 76.6 67 62.7
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.2e-12 76.3 66 62.1
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 1.2e-12 76.3 71 56.3
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 1.5e-12 75.9 57 61.4
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.5e-12 75.9 67 62.7
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.5e-12 75.9 64 64.1
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 3.4e-12 74.7 57 64.9
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 7.5e-12 73.6 74 54.1
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 7.5e-12 73.6 62 54.8
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 9.7e-12 73.2 67 55.2
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 9.7e-12 73.2 67 56.7
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 9.7e-12 73.2 60 70.0
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 1.7e-11 72.4 70 52.9
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 2.2e-11 72.0 70 61.4
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 2.2e-11 72.0 63 54.0
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 2.2e-11 72.0 60 61.7
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 2.2e-11 72.0 55 61.8
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 2.8e-11 71.6 63 54.0
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 2.8e-11 71.6 63 54.0
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 2.8e-11 71.6 64 57.8
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 4.8e-11 70.9 60 63.3
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 4.8e-11 70.9 66 56.1
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 6.3e-11 70.5 75 53.3
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 6.3e-11 70.5 68 58.8
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 6.3e-11 70.5 76 51.3
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 6.3e-11 70.5 52 65.4
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 8.3e-11 70.1 60 58.3
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 8.3e-11 70.1 62 62.9
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 8.3e-11 70.1 70 58.6
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 8.3e-11 70.1 59 62.7
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 8.3e-11 70.1 57 59.6
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 1.1e-10 69.7 61 60.7
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 1.1e-10 69.7 58 56.9
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 1.1e-10 69.7 68 57.4
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 1.4e-10 69.3 59 57.6
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 1.4e-10 69.3 61 55.7
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 1.4e-10 69.3 66 56.1
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 1.4e-10 69.3 75 49.3
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 1.4e-10 69.3 75 49.3
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 1.8e-10 68.9 64 57.8
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 1.8e-10 68.9 64 57.8
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 1.8e-10 68.9 64 57.8
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 1.8e-10 68.9 64 57.8
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 1.8e-10 68.9 64 57.8
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 1.8e-10 68.9 64 56.2
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 1.8e-10 68.9 58 60.3
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 2.4e-10 68.6 60 55.0
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 2.4e-10 68.6 75 49.3
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 3.1e-10 68.2 64 56.2
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 3.1e-10 68.2 59 57.6
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 4.1e-10 67.8 75 52.0
BcaNung06471 Brassica carinata HOM05D003086 ORTHO05D003347 4.1e-10 67.8 72 58.3
C07p53320 Brassica napus HOM05D003086 ORTHO05D003347 4.1e-10 67.8 72 58.3
BolC7t45826H Brassica oleracea HOM05D003086 ORTHO05D003347 4.1e-10 67.8 72 58.3
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 4.1e-10 67.8 60 56.7
CARHR046350 Cardamine hirsuta HOM05D003086 ORTHO05D003347 5.3e-10 67.4 70 57.1
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 5.3e-10 67.4 56 55.4
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 7.0e-10 67.0 58 56.9
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 7.0e-10 67.0 65 56.9
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 9.1e-10 66.6 62 56.5
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 9.1e-10 66.6 62 56.5
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 9.1e-10 66.6 62 56.5
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 9.1e-10 66.6 63 54.0
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 1.2e-09 66.2 76 48.7
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.6e-09 65.9 60 53.3
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.6e-09 65.9 62 54.8
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 2.0e-09 65.5 71 47.9
BcaB05g23875 Brassica carinata HOM05D003086 ORTHO05D003347 2.7e-09 65.1 71 59.2
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.7e-09 65.1 58 56.9
CDE02G0840 Ceratophyllum demersum HOM05D003086 ORTHO05D003347 2.7e-09 65.1 55 58.2
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 2.7e-09 65.1 70 51.4
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 2.7e-09 65.1 63 57.1
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 3.5e-09 64.7 60 60.0
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 3.5e-09 64.7 65 50.8
Thhalv10015091m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 3.5e-09 64.7 52 63.5
SHI06941 Sapria himalayana HOM05D003472 ORTHO05D004200 3.5e-09 64.7 67 49.3
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 4.5e-09 64.3 62 54.8
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 4.5e-09 64.3 63 57.1
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 4.5e-09 64.3 63 57.1
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 4.5e-09 64.3 60 53.3
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 4.5e-09 64.3 70 48.6
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 4.5e-09 64.3 63 54.0
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 4.5e-09 64.3 73 50.7
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 5.9e-09 63.9 76 53.9
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 5.9e-09 63.9 76 53.9
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 5.9e-09 63.9 54 61.1
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.9e-09 63.9 50 64.0
CSS0003230 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 7.7e-09 63.5 72 51.4
CSS0024306 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 7.7e-09 63.5 72 51.4
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 7.7e-09 63.5 57 57.9
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 7.7e-09 63.5 65 56.9
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.0e-08 63.2 60 58.3
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.0e-08 63.2 60 53.3
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.0e-08 63.2 63 55.6
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.0e-08 63.2 52 63.5
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 1.3e-08 62.8 68 48.5
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.7e-08 62.4 67 53.7
BcaNung05697 Brassica carinata HOM05D003086 ORTHO05D003347 1.7e-08 62.4 72 54.2
Lalb_Chr05g0223911 Lupinus albus HOM05D003086 ORTHO05D003347 2.9e-08 61.6 50 58.0
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 2.9e-08 61.6 70 45.7
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 2.9e-08 61.6 57 56.1
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 3.8e-08 61.2 63 55.6
Manes.01G039600 Manihot esculenta HOM05D003086 ORTHO05D003347 3.8e-08 61.2 48 60.4
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 5.0e-08 60.8 73 53.4
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 5.0e-08 60.8 73 53.4
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 5.0e-08 60.8 73 53.4
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 5.0e-08 60.8 73 53.4
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 5.0e-08 60.8 69 52.2
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 5.0e-08 60.8 59 52.5
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 5.0e-08 60.8 59 54.2
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 6.5e-08 60.5 57 50.9
AT1G64584 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 6.5e-08 60.5 72 54.2
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 6.5e-08 60.5 74 52.7
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 6.5e-08 60.5 74 52.7
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 8.5e-08 60.1 58 53.4
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 8.5e-08 60.1 62 41.9
SEGI_15730 Sequoiadendron giganteum HOM05D003086 ORTHO05D003347 8.5e-08 60.1 53 52.8
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 8.5e-08 60.1 58 51.7
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 1.9e-07 58.9 65 52.3
Duzib084G0307 Durio zibethinus HOM05D003086 ORTHO05D003347 1.9e-07 58.9 63 50.8
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 2.5e-07 58.5 59 50.8
CiPaw.11G115700 Carya illinoinensis HOM05D003086 ORTHO05D003347 2.5e-07 58.5 47 57.4
Aqoxy7G00049 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 3.2e-07 58.2 62 46.8
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 3.2e-07 58.2 61 52.5
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 3.2e-07 58.2 59 52.5
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 4.2e-07 57.8 59 52.5
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 5.5e-07 57.4 63 54.0
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 5.5e-07 57.4 76 48.7
Potri.003G143800 Populus trichocarpa HOM05D003086 ORTHO05D003347 7.2e-07 57.0 55 56.4
Medtr8g099965 Medicago truncatula HOM05D003086 ORTHO05D003347 9.4e-07 56.6 44 59.1
Psat7g022720 Pisum sativum HOM05D003086 ORTHO05D003347 9.4e-07 56.6 44 59.1
Zm00001eb044240 Zea mays HOM05D028875 ORTHO05D003347 9.4e-07 56.6 54 51.9
EL10Ac3g05245 Beta vulgaris HOM05D003086 ORTHO05D003347 1.2e-06 56.2 50 54.0
AUR62006063 Chenopodium quinoa HOM05D003086 ORTHO05D003347 1.2e-06 56.2 50 54.0
AUR62035564 Chenopodium quinoa HOM05D003086 ORTHO05D003347 1.2e-06 56.2 50 54.0
Lalb_Chr09g0332101 Lupinus albus HOM05D003086 ORTHO05D003347 1.2e-06 56.2 46 56.5
Lj4g0018385 Lotus japonicus HOM05D003086 ORTHO05D003347 1.6e-06 55.8 42 61.9
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 1.6e-06 55.8 63 47.6
Zm00001eb029410 Zea mays HOM05D003086 ORTHO05D003347 1.6e-06 55.8 62 48.4
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 2.7e-06 55.1 43 62.8
Ah.13g070480 Amaranthus hybridus HOM05D003086 ORTHO05D003347 3.6e-06 54.7 65 44.6
A03p54930 Brassica napus HOM05D003086 ORTHO05D003347 3.6e-06 54.7 73 50.7
BraA03t14558Z Brassica rapa HOM05D003086 ORTHO05D003347 3.6e-06 54.7 73 50.7
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 3.6e-06 54.7 50 52.0
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 3.6e-06 54.7 45 57.8
Zm00001eb259280 Zea mays HOM05D003086 ORTHO05D003347 3.6e-06 54.7 51 54.9
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 4.7e-06 54.3 54 48.1
Glyma.05G219700 Glycine max HOM05D003086 ORTHO05D003347 4.7e-06 54.3 45 55.6
Glyma.08G026000 Glycine max HOM05D003086 ORTHO05D003347 4.7e-06 54.3 45 55.6
Os10g0502100 Oryza sativa ssp. japonica HOM05D003086 ORTHO05D003347 4.7e-06 54.3 67 46.3
Sed0015662 Sechium edule HOM05D003086 ORTHO05D003347 4.7e-06 54.3 52 53.8
CAN.G1415.17 Capsicum annuum HOM05D003086 ORTHO05D003347 6.1e-06 53.9 53 49.1
FAN03G2739 Fragaria x ananassa HOM05D002608 ORTHO05D013420 6.1e-06 53.9 54 50.0
FAN10G1862 Fragaria x ananassa HOM05D037066 ORTHO05D003347 6.1e-06 53.9 54 50.0
Phvul.010G115200 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 6.1e-06 53.9 68 47.1
Zm00001eb268340 Zea mays HOM05D028875 ORTHO05D003347 6.1e-06 53.9 50 52.0
Carub.0007s1706 Capsella rubella HOM05D003086 ORTHO05D003347 8.0e-06 53.5 65 46.2
Lalb_Chr23g0271671 Lupinus albus HOM05D003086 ORTHO05D003347 8.0e-06 53.5 51 49.0
SalBow3G3175 Salvia bowleyana HOM05D003086 ORTHO05D003347 8.0e-06 53.5 57 47.4


User provided reference genes

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