Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 5.4e-193 677.6 356 100.0
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 3.7e-133 478.8 314 78.0
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 8.1e-133 477.6 361 70.6
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 8.1e-133 477.6 342 73.1
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 3.7e-125 452.2 301 75.7
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 3.1e-124 449.1 346 70.5
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 4.1e-124 448.7 285 78.2
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 4.1e-124 448.7 294 76.5
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 1.2e-123 447.2 321 71.3
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 3.4e-123 445.7 362 66.6
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 3.4e-123 445.7 366 66.4
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 5.8e-123 444.9 317 74.4
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 5.8e-123 444.9 315 74.9
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 7.6e-123 444.5 358 66.8
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 1.3e-122 443.7 317 71.6
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 1.7e-122 443.4 329 71.1
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 2.2e-122 443.0 356 67.7
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 2.2e-122 443.0 327 72.2
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.9e-122 442.6 349 68.5
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 2.9e-122 442.6 321 71.3
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 3.8e-122 442.2 341 68.3
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 6.5e-122 441.4 339 69.6
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 8.4e-122 441.0 368 66.0
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.1e-121 440.7 364 64.8
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 1.1e-121 440.7 321 71.0
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 2.5e-121 439.5 337 70.3
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 5.5e-121 438.3 359 66.6
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 5.5e-121 438.3 331 70.4
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 1.6e-120 436.8 362 65.7
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 2.7e-120 436.0 349 65.6
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 4.6e-120 435.3 292 77.1
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 7.9e-120 434.5 358 65.9
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 1.0e-119 434.1 329 68.4
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 1.3e-119 433.7 339 67.6
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 1.8e-119 433.3 317 72.9
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 1.8e-119 433.3 334 68.9
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 3.9e-119 432.2 358 65.4
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 5.1e-119 431.8 332 67.8
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 5.1e-119 431.8 321 69.8
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 6.7e-119 431.4 330 67.6
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 6.7e-119 431.4 281 76.5
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 1.1e-118 430.6 297 72.4
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 1.9e-118 429.9 356 65.4
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 2.5e-118 429.5 331 68.6
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 5.7e-118 428.3 332 67.8
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.3e-117 427.2 332 67.8
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 1.6e-117 426.8 309 69.3
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.6e-117 426.8 314 70.7
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 4.8e-117 425.2 308 68.8
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 2.4e-116 422.9 293 72.7
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 3.1e-116 422.5 346 65.0
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 3.1e-116 422.5 360 65.3
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 9.0e-116 421.0 362 63.5
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 9.0e-116 421.0 342 66.4
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 4.5e-115 418.7 263 79.1
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 1.3e-114 417.2 314 69.4
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 1.7e-114 416.8 359 63.0
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 1.7e-114 416.8 359 63.0
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 1.7e-114 416.8 359 63.0
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 2.9e-114 416.0 314 68.8
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 2.9e-114 416.0 314 69.1
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 6.5e-114 414.8 290 72.8
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 1.1e-113 414.1 334 65.3
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 1.9e-113 413.3 372 61.3
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 2.5e-113 412.9 290 72.4
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 1.2e-112 410.6 335 65.4
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 2.7e-112 409.5 293 69.6
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 4.6e-112 408.7 348 63.8
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 7.9e-112 407.9 319 66.1
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 3.0e-111 406.0 328 64.9
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 6.7e-111 404.8 355 62.0
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 6.3e-109 398.3 298 67.1
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 2.9e-106 389.4 311 65.0
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 5.0e-106 388.7 360 60.6
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 7.9e-104 381.3 310 66.1
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 7.9e-104 381.3 347 62.8
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 3.0e-103 379.4 333 60.7
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 4.1e-100 369.0 342 60.8
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 4.1e-100 369.0 333 60.7
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.7e-96 356.3 247 73.7
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 6.1e-96 355.1 264 68.6
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 1.0e-95 354.4 255 66.7
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 1.0e-95 354.4 261 68.2
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 5.2e-95 352.1 326 58.0
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 5.2e-95 352.1 348 56.6
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 4.4e-94 349.0 348 60.1
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 1.7e-93 347.1 249 70.7
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 1.7e-93 347.1 265 63.8
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 4.8e-93 345.5 248 71.8
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 8.2e-93 344.7 255 65.9
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 2.7e-91 339.7 241 69.3
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 1.0e-90 337.8 262 65.3
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 2.9e-90 336.3 246 69.9
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 7.2e-89 331.6 287 60.6
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.6e-88 329.3 260 62.3
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.8e-87 327.0 260 63.1
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 4.0e-87 325.9 259 62.2
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 4.0e-87 325.9 264 62.9
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 1.2e-86 324.3 267 60.7
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 2.4e-84 316.6 263 59.3
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 9.1e-84 314.7 262 57.6
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 2.0e-83 313.5 262 57.3
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 1.0e-82 311.2 262 56.9
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 2.5e-81 306.6 267 57.3
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 7.2e-81 305.1 230 66.1
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 9.4e-81 304.7 262 56.1
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 4.7e-80 302.4 213 75.1
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 1.4e-79 300.8 266 54.9
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 1.8e-79 300.4 258 56.6
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 3.0e-79 299.7 262 55.0
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 3.0e-79 299.7 310 50.3
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 5.7e-78 295.4 267 53.9
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 9.8e-78 294.7 261 55.2
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 9.8e-78 294.7 261 55.2
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 9.8e-78 294.7 278 54.3
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 2.2e-77 293.5 265 54.3
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 3.7e-77 292.7 266 54.1
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 5.9e-75 285.4 262 54.6
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 1.9e-73 280.4 231 57.1
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.6e-72 277.3 230 57.8
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 2.8e-72 276.6 280 50.4
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 3.6e-72 276.2 266 51.9
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 3.6e-72 276.2 197 70.6
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 4.7e-72 275.8 261 52.1
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.7e-72 275.8 261 52.1
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 4.7e-72 275.8 268 52.2
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 1.4e-71 274.2 251 55.8
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 5.2e-71 272.3 275 53.8
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.5e-70 270.8 258 52.3
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 4.1e-68 262.7 193 69.4
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 5.9e-67 258.8 245 54.3
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 6.6e-66 255.4 177 71.8
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.2e-62 244.6 267 50.6
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 1.2e-62 244.6 195 63.6
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 9.8e-62 241.5 229 51.1
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 3.2e-60 236.5 277 49.1
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 1.9e-57 227.3 255 47.8
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.9e-57 227.3 259 47.9
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 8.1e-56 221.9 236 53.4
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 6.8e-55 218.8 399 38.6
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 4.4e-54 216.1 125 82.4
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 5.8e-54 215.7 179 57.0
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 2.7e-51 206.8 270 45.2
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 6.6e-50 202.2 139 72.7
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.9e-49 200.7 183 54.1
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 6.8e-47 192.2 166 54.8
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 4.9e-45 186.0 146 62.3
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 1.3e-42 177.9 236 48.7
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.9e-41 174.1 200 53.0
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 1.1e-36 158.3 134 60.4
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 1.4e-36 157.9 237 39.7
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 4.8e-32 142.9 227 41.4
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 3.4e-30 136.7 243 37.9
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 9.6e-25 118.6 110 50.9
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 3.6e-24 116.7 210 38.6
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 1.1e-23 115.2 146 50.0
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 3.1e-23 113.6 87 62.1
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 5.3e-23 112.8 122 50.8
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 2.7e-19 100.5 91 59.3
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 7.9e-19 99.0 181 36.5
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.5e-17 94.0 212 30.2
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 1.3e-16 91.7 65 73.8
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 8.1e-16 89.0 69 65.2
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 4.5e-14 83.2 100 54.0
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.0e-13 82.0 63 66.7
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 3.8e-13 80.1 68 63.2
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 7.1e-12 75.9 66 56.1
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 5.1e-10 69.7 63 54.0
VMungo0647G2082 Vigna mungo HOM05D003990 ORTHO05D004925 5.1e-10 69.7 88 45.5
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 6.7e-10 69.3 64 53.1
AagrBONN_evm.TU.Sc2ySwM_344.3329 Anthoceros agrestis HOM05D003990 ORTHO05D071624 1.1e-09 68.6 269 29.0
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 1.9e-09 67.8 58 62.1


User provided reference genes

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