Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 6.5e-97 357.5 189 100.0
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 1.0e-81 307.0 192 86.5
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 2.3e-81 305.8 192 85.4
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 1.1e-80 303.5 180 88.9
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 1.9e-80 302.8 190 86.3
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 2.5e-80 302.4 177 89.8
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 7.2e-80 300.8 192 83.3
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 9.5e-80 300.4 192 84.4
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 8.0e-79 297.4 192 83.9
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 1.0e-78 297.0 193 83.4
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 1.4e-78 296.6 192 83.9
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 3.0e-78 295.4 191 81.7
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 4.0e-78 295.0 192 81.8
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 4.0e-78 295.0 192 83.3
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 5.2e-78 294.7 192 81.2
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.2e-77 293.5 192 80.7
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 1.2e-77 293.5 191 80.6
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 2.6e-77 292.4 192 81.2
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 5.7e-77 291.2 190 81.6
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 5.7e-77 291.2 190 82.6
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 3.7e-76 288.5 188 83.5
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 3.7e-76 288.5 192 80.7
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 4.9e-76 288.1 192 81.8
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 1.4e-75 286.6 173 86.1
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 1.4e-75 286.6 184 82.1
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 1.8e-75 286.2 190 80.0
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 7.0e-75 284.3 183 81.4
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 1.2e-74 283.5 191 78.5
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 1.2e-74 283.5 188 81.4
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 2.7e-74 282.3 186 80.6
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 4.5e-74 281.6 187 80.2
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 1.3e-73 280.0 185 80.0
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.7e-73 279.6 188 80.3
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 1.7e-73 279.6 200 74.5
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 3.8e-73 278.5 182 78.6
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 3.8e-73 278.5 186 79.6
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 8.6e-73 277.3 182 80.2
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 5.6e-72 274.6 197 74.1
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 1.0e-70 270.4 192 75.5
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.0e-70 270.4 187 78.1
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 4.0e-70 268.5 158 84.8
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 4.0e-70 268.5 155 86.5
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.2e-69 266.9 189 73.5
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.2e-69 266.9 189 73.5
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 1.2e-69 266.9 188 74.5
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.5e-69 266.5 191 74.9
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 1.5e-69 266.5 169 82.2
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 2.0e-69 266.2 187 75.4
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.6e-69 265.8 188 73.9
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 3.4e-69 265.4 189 73.0
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 4.4e-69 265.0 171 81.3
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 5.8e-69 264.6 188 75.0
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 5.8e-69 264.6 195 73.8
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 5.8e-69 264.6 176 80.1
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 9.8e-69 263.8 187 73.8
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 9.8e-69 263.8 204 69.1
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 9.8e-69 263.8 204 69.1
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 9.8e-69 263.8 204 69.1
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 1.3e-68 263.5 158 83.5
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.2e-68 262.7 188 73.4
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 3.7e-68 261.9 176 76.7
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 3.7e-68 261.9 193 72.0
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 3.7e-68 261.9 193 72.0
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 4.9e-68 261.5 191 72.8
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 6.4e-68 261.2 191 73.3
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 8.3e-68 260.8 192 72.9
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.1e-67 260.4 191 72.8
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.1e-67 260.4 176 76.1
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.9e-67 259.6 187 73.8
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 1.9e-67 259.6 191 72.8
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 3.2e-67 258.8 175 76.0
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 4.1e-67 258.5 191 71.7
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 4.1e-67 258.5 187 71.7
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 4.1e-67 258.5 195 69.7
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 5.4e-67 258.1 198 70.7
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.2e-66 256.9 187 73.3
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.2e-66 256.9 187 73.3
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 2.0e-66 256.1 202 69.3
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 2.7e-66 255.8 187 71.1
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 4.6e-66 255.0 197 70.1
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 1.3e-65 253.4 205 67.3
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.7e-65 253.1 171 76.6
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 2.3e-65 252.7 191 71.7
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 3.0e-65 252.3 182 70.3
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 3.0e-65 252.3 173 78.0
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 3.9e-65 251.9 194 71.6
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 3.9e-65 251.9 178 71.9
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 1.5e-64 250.0 176 72.7
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 3.3e-64 248.8 201 67.2
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 4.3e-64 248.4 190 71.6
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 5.6e-64 248.1 210 65.7
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 5.6e-64 248.1 164 76.2
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 5.6e-64 248.1 153 83.0
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 7.3e-64 247.7 157 79.6
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 9.5e-64 247.3 175 72.6
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 1.6e-63 246.5 154 84.4
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 2.8e-63 245.7 190 67.4
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 8.0e-63 244.2 191 69.6
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 1.1e-62 243.8 194 67.5
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.4e-62 243.4 189 69.8
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.8e-62 243.0 175 71.4
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 2.3e-62 242.7 176 71.6
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 2.3e-62 242.7 192 68.8
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 4.0e-62 241.9 173 74.0
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 5.2e-62 241.5 191 68.6
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 8.9e-62 240.7 185 69.2
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.2e-61 240.4 184 70.7
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.5e-61 240.0 167 76.6
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 1.5e-61 240.0 191 66.5
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 1.5e-61 240.0 158 78.5
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 3.4e-61 238.8 170 71.2
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 5.8e-61 238.0 211 64.5
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 7.5e-61 237.7 159 74.8
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 3.7e-60 235.3 198 69.2
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 9.2e-59 230.7 195 65.1
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 6.0e-58 228.0 167 73.1
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 1.0e-57 227.3 177 68.9
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 1.7e-57 226.5 169 71.0
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 6.6e-57 224.6 191 65.4
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 1.9e-56 223.0 188 64.4
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 4.3e-56 221.9 193 62.2
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 5.6e-56 221.5 191 63.9
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 7.3e-56 221.1 168 70.8
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 2.8e-55 219.2 259 53.7
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 8.1e-55 217.6 181 66.3
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 2.3e-54 216.1 146 76.0
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 3.5e-50 202.2 191 60.7
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 7.8e-50 201.1 191 60.2
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 1.1e-48 197.2 176 62.5
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 4.7e-47 191.8 132 79.5
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 1.8e-46 189.9 147 66.0
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 4.0e-46 188.7 150 68.0
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 1.2e-45 187.2 214 54.2
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 1.3e-44 183.7 156 65.4
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 8.4e-44 181.0 181 55.8
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 5.4e-43 178.3 110 77.3
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 3.0e-41 172.6 132 65.2
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.9e-40 169.9 168 58.9
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 6.2e-39 164.9 104 75.0
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 3.4e-37 159.1 156 51.3
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 4.9e-36 155.2 144 51.4
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.9e-35 153.3 132 64.4
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.4e-35 152.9 129 60.5
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 5.4e-35 151.8 130 63.1
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.2e-34 150.6 130 63.1
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 6.0e-34 148.3 154 51.3
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.0e-33 146.0 130 63.1
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 3.3e-32 142.5 172 43.0
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 5.6e-32 141.7 91 72.5
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 5.6e-32 141.7 121 62.8
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 7.3e-32 141.4 176 42.6
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 3.6e-31 139.0 82 79.3
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 2.4e-30 136.3 124 55.6
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 1.6e-26 123.6 187 47.1
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 4.3e-24 115.5 114 58.8
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 1.9e-19 100.1 86 66.3
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 2.1e-15 86.7 58 69.0
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 1.4e-11 73.9 80 61.2
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 2.7e-10 69.7 177 37.3
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.3e-09 67.4 105 44.8


User provided reference genes

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