Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 2.6e-45 185.3 109 100.0
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 3.3e-16 88.6 75 58.7
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 6.1e-15 84.3 81 54.3
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 1.4e-14 83.2 75 57.3
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 4.0e-14 81.6 74 60.8
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 5.2e-14 81.3 77 55.8
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 2.6e-13 79.0 82 53.7
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 3.4e-13 78.6 75 56.0
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 3.4e-13 78.6 77 57.1
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 3.4e-13 78.6 84 57.1
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 4.4e-13 78.2 77 54.5
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 5.8e-13 77.8 69 55.1
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 7.5e-13 77.4 85 49.4
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 9.8e-13 77.0 75 56.0
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.3e-12 76.6 77 54.5
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.7e-12 76.3 77 53.2
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 2.2e-12 75.9 77 54.5
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.7e-12 75.1 79 54.4
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 3.7e-12 75.1 77 55.8
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 3.7e-12 75.1 44 77.3
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 4.9e-12 74.7 79 54.4
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 4.9e-12 74.7 79 54.4
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 4.9e-12 74.7 79 54.4
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 4.9e-12 74.7 78 55.1
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 4.9e-12 74.7 88 50.0
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 4.9e-12 74.7 66 59.1
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 8.3e-12 73.9 79 49.4
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 1.1e-11 73.6 75 54.7
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 1.1e-11 73.6 44 75.0
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.4e-11 73.2 77 49.4
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.4e-11 73.2 79 53.2
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 1.9e-11 72.8 54 63.0
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 1.9e-11 72.8 53 62.3
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 2.4e-11 72.4 68 52.9
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 3.2e-11 72.0 81 53.1
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 3.2e-11 72.0 63 54.0
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 4.1e-11 71.6 79 49.4
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 4.1e-11 71.6 57 59.6
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 5.4e-11 71.2 64 54.7
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 5.4e-11 71.2 84 51.2
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 7.0e-11 70.9 67 58.2
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 7.0e-11 70.9 49 69.4
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 7.0e-11 70.9 65 52.3
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 9.2e-11 70.5 81 43.2
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 9.2e-11 70.5 62 61.3
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 1.2e-10 70.1 75 50.7
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 1.2e-10 70.1 75 50.7
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 1.2e-10 70.1 87 48.3
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 2.0e-10 69.3 43 69.8
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 2.0e-10 69.3 43 69.8
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 2.0e-10 69.3 52 69.2
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 2.0e-10 69.3 52 69.2
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 2.7e-10 68.9 85 48.2
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.7e-10 68.9 57 61.4
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 2.7e-10 68.9 78 50.0
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 2.7e-10 68.9 78 52.6
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 2.7e-10 68.9 85 49.4
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 2.7e-10 68.9 56 58.9
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 3.5e-10 68.6 81 45.7
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 3.5e-10 68.6 81 45.7
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 3.5e-10 68.6 54 57.4
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 4.6e-10 68.2 55 61.8
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 4.6e-10 68.2 85 49.4
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 4.6e-10 68.2 77 51.9
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 6.0e-10 67.8 76 46.1
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 7.8e-10 67.4 41 68.3
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 7.8e-10 67.4 81 45.7
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 1.0e-09 67.0 83 45.8
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.3e-09 66.6 76 51.3
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 1.7e-09 66.2 56 58.9
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 1.7e-09 66.2 64 53.1
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 1.7e-09 66.2 56 57.1
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 2.3e-09 65.9 71 54.9
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 3.9e-09 65.1 84 45.2
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 3.9e-09 65.1 58 53.4
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 5.0e-09 64.7 76 51.3
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 6.6e-09 64.3 85 44.7
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 6.6e-09 64.3 57 56.1
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 8.6e-09 63.9 46 69.6
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 8.6e-09 63.9 65 52.3
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 1.1e-08 63.5 67 52.2
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 1.1e-08 63.5 36 77.8
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 1.9e-08 62.8 45 57.8
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 2.5e-08 62.4 69 52.2
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 2.5e-08 62.4 41 68.3
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 2.5e-08 62.4 79 45.6
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 3.3e-08 62.0 63 50.8
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 4.3e-08 61.6 67 50.7
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 4.3e-08 61.6 52 55.8
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 4.3e-08 61.6 41 65.9
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 5.6e-08 61.2 81 43.2
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 5.6e-08 61.2 41 61.0
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 7.3e-08 60.8 51 51.0
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 9.5e-08 60.5 62 50.0
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 9.5e-08 60.5 65 52.3
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 1.2e-07 60.1 67 49.3
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 1.2e-07 60.1 83 43.4
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 1.2e-07 60.1 69 47.8
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 1.6e-07 59.7 87 42.5
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 1.6e-07 59.7 45 62.2
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 1.6e-07 59.7 87 42.5
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 1.6e-07 59.7 45 62.2
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 1.6e-07 59.7 67 47.8
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 2.1e-07 59.3 70 42.9
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 2.1e-07 59.3 40 67.5
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 2.1e-07 59.3 75 46.7
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 2.1e-07 59.3 75 46.7
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 2.8e-07 58.9 68 48.5
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 2.8e-07 58.9 56 51.8
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 2.8e-07 58.9 56 51.8
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 2.8e-07 58.9 70 48.6
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 2.8e-07 58.9 52 55.8
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 4.7e-07 58.2 56 51.8
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 4.7e-07 58.2 56 51.8
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 4.7e-07 58.2 51 52.9
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 4.7e-07 58.2 42 61.9
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 4.7e-07 58.2 65 50.8
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 6.2e-07 57.8 81 43.2
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 6.2e-07 57.8 81 43.2
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 8.0e-07 57.4 81 43.2
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 8.0e-07 57.4 58 43.1
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 1.8e-06 56.2 55 52.7
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.8e-06 56.2 52 53.8
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 2.3e-06 55.8 58 46.6
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 2.3e-06 55.8 50 52.0
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 3.1e-06 55.5 45 60.0
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 4.0e-06 55.1 76 42.1
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 6.8e-06 54.3 71 43.7


User provided reference genes

Program Settings