Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1643 Acer truncatum HOM05D004366 ORTHO05D005058 6.0e-97 357.5 175 100.0
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 2.8e-09 66.2 42 73.8
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 3.6e-09 65.9 42 71.4
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 4.7e-09 65.5 42 71.4
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 4.7e-09 65.5 42 71.4
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 6.2e-09 65.1 42 71.4
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 6.2e-09 65.1 42 71.4
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 1.1e-08 64.3 42 71.4
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 1.4e-08 63.9 42 66.7
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 1.4e-08 63.9 42 71.4
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 1.4e-08 63.9 42 71.4
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 1.8e-08 63.5 42 73.8
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 1.8e-08 63.5 42 71.4
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.4e-08 63.2 42 71.4
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.4e-08 63.2 42 71.4
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 3.1e-08 62.8 42 76.2
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 3.1e-08 62.8 39 79.5
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 3.1e-08 62.8 42 66.7
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 3.1e-08 62.8 42 71.4
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 4.0e-08 62.4 42 69.0
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 4.0e-08 62.4 42 66.7
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 5.2e-08 62.0 42 66.7
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 5.2e-08 62.0 42 69.0
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 5.2e-08 62.0 42 69.0
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 6.8e-08 61.6 42 69.0
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 8.9e-08 61.2 42 64.3
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 8.9e-08 61.2 42 71.4
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 1.2e-07 60.8 42 66.7
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 1.2e-07 60.8 42 66.7
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.5e-07 60.5 42 69.0
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 1.5e-07 60.5 43 69.8
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 1.5e-07 60.5 42 71.4
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 1.5e-07 60.5 42 66.7
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 2.0e-07 60.1 42 71.4
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.0e-07 60.1 42 71.4
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.0e-07 60.1 42 71.4
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.0e-07 60.1 42 71.4
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 2.0e-07 60.1 42 69.0
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 2.0e-07 60.1 42 71.4
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 2.6e-07 59.7 43 65.1
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 2.6e-07 59.7 42 66.7
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 3.4e-07 59.3 43 62.8
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 3.4e-07 59.3 44 63.6
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 4.4e-07 58.9 42 69.0
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 4.4e-07 58.9 42 61.9
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 5.8e-07 58.5 42 61.9
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 5.8e-07 58.5 42 69.0
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 5.8e-07 58.5 42 69.0
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 5.8e-07 58.5 42 66.7
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 7.6e-07 58.2 45 62.2
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 7.6e-07 58.2 45 62.2
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 7.6e-07 58.2 42 66.7
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 7.6e-07 58.2 42 66.7
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 9.9e-07 57.8 43 62.8
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 9.9e-07 57.8 42 59.5
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 9.9e-07 57.8 36 75.0
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 9.9e-07 57.8 45 62.2
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 9.9e-07 57.8 45 62.2
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 1.3e-06 57.4 43 62.8
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 1.3e-06 57.4 43 62.8
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 1.3e-06 57.4 42 64.3
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 1.3e-06 57.4 42 66.7
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 1.7e-06 57.0 42 64.3
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 1.7e-06 57.0 42 66.7
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 1.7e-06 57.0 43 60.5
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 1.7e-06 57.0 42 66.7
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 2.2e-06 56.6 43 62.8
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 2.2e-06 56.6 43 60.5
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 2.2e-06 56.6 69 47.8
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 2.9e-06 56.2 43 55.8
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 2.9e-06 56.2 43 55.8
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 2.9e-06 56.2 42 61.9
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 2.9e-06 56.2 43 60.5
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 2.9e-06 56.2 42 57.1
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 3.8e-06 55.8 42 59.5
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 3.8e-06 55.8 42 59.5
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 3.8e-06 55.8 45 51.1
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 3.8e-06 55.8 45 51.1
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 3.8e-06 55.8 45 51.1
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 3.8e-06 55.8 42 66.7
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 3.8e-06 55.8 42 59.5
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 3.8e-06 55.8 42 57.1
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 4.9e-06 55.5 43 60.5
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 4.9e-06 55.5 42 61.9
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 4.9e-06 55.5 42 66.7
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 6.4e-06 55.1 43 55.8
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 6.4e-06 55.1 43 60.5
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 6.4e-06 55.1 43 55.8
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 6.4e-06 55.1 43 55.8
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 6.4e-06 55.1 43 55.8
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 6.4e-06 55.1 43 55.8
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 6.4e-06 55.1 43 55.8
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 6.4e-06 55.1 43 60.5
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 6.4e-06 55.1 45 62.2
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 8.4e-06 54.7 45 57.8
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 8.4e-06 54.7 42 61.9
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 8.4e-06 54.7 41 63.4


User provided reference genes

Program Settings