Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 8.9e-287 989.6 496 100.0
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 8.3e-168 594.3 511 65.0
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 6.0e-166 588.2 379 83.4
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 3.1e-154 549.3 498 60.6
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 5.8e-153 545.0 505 59.6
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 2.9e-152 542.7 520 57.1
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 6.4e-152 541.6 556 54.7
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 2.4e-151 539.7 525 58.1
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 4.1e-151 538.9 503 59.0
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.2e-150 537.3 524 57.8
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 3.5e-150 535.8 522 56.1
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 4.6e-150 535.4 523 58.1
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 1.0e-149 534.3 502 59.2
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.0e-149 534.3 532 58.1
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 1.3e-149 533.9 492 57.7
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 1.7e-149 533.5 523 57.9
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 6.6e-149 531.6 519 57.6
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 6.6e-149 531.6 517 57.4
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 8.6e-149 531.2 531 56.1
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 1.1e-148 530.8 502 59.6
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 1.5e-148 530.4 523 55.4
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 5.6e-148 528.5 505 58.2
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 9.6e-148 527.7 537 56.1
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 2.4e-146 523.1 545 55.2
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 8.9e-146 521.2 502 58.2
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 1.2e-145 520.8 484 59.3
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.0e-145 520.0 541 53.6
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 9.9e-145 517.7 503 56.7
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.9e-144 516.2 505 57.8
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 4.9e-144 515.4 529 55.2
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 8.4e-144 514.6 528 54.9
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 1.4e-143 513.8 470 60.6
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 1.4e-143 513.8 523 55.1
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 1.9e-143 513.5 501 56.3
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 1.9e-143 513.5 502 56.8
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 9.3e-143 511.1 495 58.8
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 1.2e-142 510.8 504 56.9
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.2e-142 510.8 506 56.7
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 1.6e-142 510.4 506 56.5
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 2.1e-142 510.0 504 56.9
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 2.7e-142 509.6 505 57.2
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.0e-141 507.7 507 55.2
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 1.3e-141 507.3 506 57.3
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.3e-141 506.5 502 56.4
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.0e-141 506.1 496 58.5
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 3.0e-141 506.1 508 55.5
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 3.9e-141 505.8 492 56.5
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 3.9e-141 505.8 502 56.0
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 8.7e-141 504.6 524 55.0
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 8.7e-141 504.6 559 53.7
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 1.9e-140 503.4 502 55.6
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 2.5e-140 503.1 524 54.4
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 4.3e-140 502.3 492 54.9
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 4.3e-140 502.3 495 57.0
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 1.1e-138 497.7 493 57.2
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 2.4e-138 496.5 497 56.1
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 5.3e-138 495.4 500 56.6
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 5.8e-137 491.9 499 55.5
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 1.3e-136 490.7 494 54.9
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 1.7e-136 490.3 517 53.2
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 1.7e-136 490.3 494 55.5
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 6.4e-136 488.4 515 53.2
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 4.2e-135 485.7 545 51.6
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.7e-134 483.0 481 54.9
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 4.6e-134 482.3 495 54.5
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 7.9e-134 481.5 502 53.2
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.8e-133 480.3 500 55.4
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 3.9e-133 479.2 528 52.1
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 1.9e-132 476.9 508 52.2
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.9e-132 476.9 499 53.5
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 9.6e-132 474.6 519 52.6
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 3.6e-131 472.6 496 53.8
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.4e-130 470.7 505 53.1
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 1.8e-130 470.3 594 47.5
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 2.4e-130 469.9 523 51.6
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 6.9e-130 468.4 509 50.3
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 2.6e-129 466.5 494 54.3
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 3.4e-129 466.1 516 52.7
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 3.4e-129 466.1 486 54.7
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 1.4e-127 460.7 497 51.5
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.4e-127 460.7 488 53.7
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 7.1e-127 458.4 537 51.4
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 2.7e-126 456.4 496 52.4
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 6.0e-126 455.3 492 52.2
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.0e-125 454.5 486 52.9
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 1.0e-125 454.5 507 51.1
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 3.0e-125 453.0 487 50.7
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 2.5e-124 449.9 480 54.2
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 7.4e-124 448.4 491 50.3
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.1e-123 446.8 497 50.7
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 9.0e-122 441.4 551 51.0
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 2.0e-121 440.3 428 58.2
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 2.6e-121 439.9 495 52.3
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 1.9e-119 433.7 493 50.5
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.2e-119 433.0 493 51.5
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 4.2e-119 432.6 367 64.6
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 3.0e-117 426.4 525 48.4
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 3.9e-117 426.0 499 50.7
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 8.7e-117 424.9 496 51.2
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.5e-116 424.1 473 50.5
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.1e-115 420.2 374 60.2
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 4.1e-114 416.0 499 47.9
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 2.0e-113 413.7 447 54.1
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 6.5e-112 408.7 508 48.0
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 4.2e-111 406.0 495 48.1
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.6e-107 394.0 491 48.5
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 2.8e-107 393.3 495 47.1
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 3.7e-107 392.9 497 46.7
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 8.2e-107 391.7 543 46.4
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 1.8e-106 390.6 331 58.9
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 1.9e-103 380.6 497 47.9
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 2.0e-100 370.5 503 45.5
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 7.4e-100 368.6 511 43.1
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 7.4e-100 368.6 403 52.1
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 7.9e-94 348.6 372 57.0
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 8.8e-93 345.1 493 41.6
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 9.7e-92 341.7 407 49.1
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 4.8e-91 339.3 264 66.3
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 7.2e-87 325.5 336 55.7
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.4e-85 321.2 353 53.3
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.3e-83 314.7 234 70.5
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 6.3e-83 312.4 384 47.9
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 5.0e-80 302.8 337 54.3
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 3.6e-78 296.6 431 43.4
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.3e-75 288.1 243 55.6
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 4.1e-74 283.1 337 47.5
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.0e-73 280.8 349 45.8
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 4.5e-73 279.6 411 44.5
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.3e-72 277.3 234 54.7
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 8.6e-72 275.4 343 48.1
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 7.2e-71 272.3 347 49.0
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 3.1e-66 256.9 342 47.4
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.6e-57 228.0 283 45.6
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.0e-57 227.6 173 65.3
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.3e-56 224.9 173 64.7
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 5.0e-56 223.0 185 61.6
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 1.6e-54 218.0 151 68.2
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 2.6e-52 210.7 608 30.1
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 4.4e-52 209.9 441 33.8
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 9.8e-52 208.8 184 58.7
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 1.4e-50 204.9 159 61.6
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 1.3e-48 198.4 144 64.6
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 2.5e-47 194.1 261 46.0
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 7.3e-47 192.6 156 61.5
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.2e-44 185.3 349 33.5
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 5.4e-42 176.4 146 61.6
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.3e-40 171.8 177 53.1
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.3e-35 155.2 118 62.7
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.1e-34 150.2 128 57.0
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 5.2e-29 133.3 171 50.3
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.5e-28 131.7 107 57.0
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.4e-26 125.2 142 52.8
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 4.6e-25 120.2 159 41.5
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.0e-24 117.5 182 43.4
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.3e-23 112.8 206 39.3
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.2e-17 95.5 132 41.7
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.3e-14 85.5 76 56.6
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 9.0e-13 79.3 100 39.0
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 2.9e-11 74.3 75 56.0
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 5.5e-10 70.1 75 52.0
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 5.6e-07 60.1 53 54.7


User provided reference genes

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