Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 2.6e-33 144.8 75 100.0
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 7.4e-20 100.1 54 90.7
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.3e-16 89.4 54 75.9
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 5.5e-15 84.0 54 72.2
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 7.2e-15 83.6 54 72.2
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.6e-14 82.4 54 75.9
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 2.1e-14 82.0 54 68.5
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 2.7e-14 81.6 54 70.4
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 2.7e-14 81.6 54 68.5
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 3.6e-14 81.3 54 68.5
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 4.7e-14 80.9 54 68.5
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 6.1e-14 80.5 54 66.7
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 1.4e-13 79.3 54 66.7
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 1.4e-13 79.3 54 66.7
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 1.4e-13 79.3 54 68.5
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 3.0e-13 78.2 54 64.8
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 3.0e-13 78.2 54 70.4
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 3.0e-13 78.2 54 64.8
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 4.0e-13 77.8 56 69.6
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 1.5e-12 75.9 54 63.0
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 2.0e-12 75.5 55 65.5
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.0e-12 75.5 56 69.6
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.0e-12 75.5 56 69.6
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 2.6e-12 75.1 50 68.0
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 2.6e-12 75.1 55 65.5
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 3.4e-12 74.7 54 61.1
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 3.4e-12 74.7 54 61.1
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 4.4e-12 74.3 54 61.1
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 5.7e-12 73.9 54 63.0
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 5.7e-12 73.9 54 66.7
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 5.7e-12 73.9 54 66.7
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 9.7e-12 73.2 55 61.8
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 9.7e-12 73.2 55 61.8
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 9.7e-12 73.2 47 70.2
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 9.7e-12 73.2 55 67.3
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 1.3e-11 72.8 55 67.3
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 1.7e-11 72.4 56 71.4
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 1.7e-11 72.4 56 71.4
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.7e-11 72.4 55 61.8
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 1.7e-11 72.4 56 67.9
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.7e-11 72.4 54 64.8
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 2.2e-11 72.0 55 60.0
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 2.2e-11 72.0 55 65.5
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.8e-11 71.6 56 66.1
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 3.7e-11 71.2 54 61.1
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 4.8e-11 70.9 55 60.0
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 4.8e-11 70.9 55 63.6
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 6.3e-11 70.5 55 58.2
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 8.3e-11 70.1 56 69.6
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 1.1e-10 69.7 51 64.7
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.4e-10 69.3 51 62.7
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 1.8e-10 68.9 54 63.0
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 2.4e-10 68.6 54 63.0
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 4.1e-10 67.8 54 61.1
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 5.3e-10 67.4 54 61.1
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 9.1e-10 66.6 55 63.6
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 9.1e-10 66.6 59 62.7
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 1.2e-09 66.2 52 57.7
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 1.2e-09 66.2 55 60.0
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 1.2e-09 66.2 54 63.0
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.2e-09 66.2 59 62.7
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.0e-09 65.5 42 69.0
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 2.0e-09 65.5 56 66.1
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 2.7e-09 65.1 56 57.1
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 2.7e-09 65.1 56 58.9
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 2.7e-09 65.1 54 57.4
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 2.7e-09 65.1 54 57.4
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 3.5e-09 64.7 54 57.4
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 4.5e-09 64.3 59 59.3
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 4.5e-09 64.3 59 59.3
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 4.5e-09 64.3 59 59.3
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 5.9e-09 63.9 56 57.1
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 5.9e-09 63.9 56 64.3
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 7.7e-09 63.5 59 57.6
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 7.7e-09 63.5 59 57.6
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 1.7e-08 62.4 46 67.4
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 2.2e-08 62.0 55 58.2
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 2.2e-08 62.0 51 58.8
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 2.2e-08 62.0 60 61.7
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 2.2e-08 62.0 59 57.6
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 3.8e-08 61.2 55 60.0
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 5.0e-08 60.8 55 58.2
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 6.5e-08 60.5 51 54.9
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 6.5e-08 60.5 60 61.7
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 8.5e-08 60.1 60 60.0
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.1e-07 59.7 52 55.8
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 1.5e-07 59.3 53 60.4
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.9e-07 58.9 40 62.5
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 2.5e-07 58.5 60 51.7
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 2.5e-07 58.5 60 51.7
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 2.5e-07 58.5 60 53.3
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 5.5e-07 57.4 51 54.9
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 5.5e-07 57.4 51 54.9
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 5.5e-07 57.4 51 54.9
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 5.5e-07 57.4 51 54.9
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 5.5e-07 57.4 51 54.9
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 5.5e-07 57.4 51 54.9
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 5.5e-07 57.4 51 54.9
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 5.5e-07 57.4 54 55.6
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 5.5e-07 57.4 56 55.4
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 9.4e-07 56.6 51 52.9
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 2.1e-06 55.5 51 52.9
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 2.1e-06 55.5 51 52.9
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 2.1e-06 55.5 61 52.5
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 2.7e-06 55.1 61 50.8
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.7e-06 55.1 51 58.8
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 2.7e-06 55.1 61 49.2
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 3.6e-06 54.7 56 51.8
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 3.6e-06 54.7 55 58.2
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 3.6e-06 54.7 59 52.5
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 4.7e-06 54.3 51 52.9
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 6.1e-06 53.9 40 57.5
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 6.1e-06 53.9 44 54.5
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 6.1e-06 53.9 57 50.9


User provided reference genes

Program Settings