Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 1.5e-231 805.8 408 100.0
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 3.0e-179 632.1 437 74.1
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 1.8e-168 596.3 409 73.1
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 4.4e-167 591.7 408 72.1
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 2.1e-164 582.8 409 71.1
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.5e-162 576.6 408 70.6
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 1.9e-162 576.2 408 71.1
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 4.3e-162 575.1 408 70.6
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.3e-162 575.1 408 70.6
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 7.3e-162 574.3 408 70.8
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.6e-161 572.0 408 70.3
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 8.1e-161 570.9 406 70.0
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 1.8e-160 569.7 401 69.8
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 3.1e-160 568.9 410 70.0
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 4.0e-160 568.5 417 69.1
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 9.0e-160 567.4 379 74.7
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 9.0e-160 567.4 399 72.7
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 2.0e-159 566.2 408 70.3
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 3.4e-159 565.5 406 69.7
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 3.4e-159 565.5 410 68.5
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 4.4e-159 565.1 434 68.4
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 9.9e-159 563.9 400 70.8
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.7e-158 563.1 401 70.3
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 2.2e-158 562.8 405 69.9
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 4.9e-158 561.6 417 69.1
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 1.1e-157 560.5 412 67.7
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 1.9e-157 559.7 415 68.0
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 3.2e-157 558.9 399 72.2
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.6e-156 556.6 399 72.2
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 6.0e-156 554.7 392 71.7
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.0e-155 553.9 399 71.9
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 1.7e-155 553.1 399 71.4
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 3.9e-155 552.0 375 72.3
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 2.5e-154 549.3 409 68.0
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 1.3e-153 547.0 410 67.8
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 2.1e-153 546.2 398 68.6
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 2.8e-153 545.8 401 68.3
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 3.6e-153 545.4 384 69.3
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 4.8e-153 545.0 375 73.3
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.1e-152 543.9 375 72.8
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 1.1e-152 543.9 408 66.9
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 2.4e-152 542.7 399 67.9
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 3.1e-152 542.3 393 68.4
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 6.9e-152 541.2 400 68.2
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.2e-151 540.4 400 68.5
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 5.8e-151 538.1 384 70.3
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.3e-150 537.0 392 71.4
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 2.9e-150 535.8 407 66.1
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 3.8e-150 535.4 410 66.1
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 2.4e-149 532.7 377 67.9
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 3.2e-149 532.3 406 66.7
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 4.2e-149 531.9 398 66.1
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 5.4e-149 531.6 412 65.8
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 5.4e-149 531.6 398 67.3
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 7.1e-149 531.2 377 67.6
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 1.6e-148 530.0 395 66.6
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 1.6e-148 530.0 395 66.6
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 2.7e-148 529.3 372 68.8
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 4.6e-148 528.5 408 65.9
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 6.0e-148 528.1 393 66.4
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 7.9e-148 527.7 378 68.0
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 2.3e-147 526.2 395 66.8
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 3.3e-146 522.3 400 65.8
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 3.3e-146 522.3 389 66.8
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 3.3e-146 522.3 374 68.2
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 5.6e-146 521.5 395 66.1
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 5.6e-146 521.5 395 66.1
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 1.3e-145 520.4 390 67.2
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 2.8e-145 519.2 380 68.2
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 3.7e-145 518.8 379 67.5
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 1.4e-144 516.9 397 65.0
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 1.4e-144 516.9 375 68.5
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 1.8e-144 516.5 398 65.6
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 1.8e-144 516.5 384 66.7
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 3.1e-144 515.8 400 64.8
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 4.0e-144 515.4 404 65.6
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 6.9e-144 514.6 375 68.5
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.2e-143 513.8 383 66.3
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 2.0e-143 513.1 373 66.2
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 4.5e-143 511.9 392 65.3
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 4.5e-143 511.9 399 64.7
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 4.9e-142 508.4 367 66.5
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 6.4e-142 508.1 372 66.9
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 3.2e-141 505.8 392 67.9
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 4.2e-141 505.4 410 63.7
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 5.5e-141 505.0 384 66.1
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 1.2e-140 503.8 383 65.3
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 1.2e-140 503.8 372 66.9
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 1.6e-140 503.4 387 64.6
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 2.1e-140 503.1 408 61.3
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 2.7e-140 502.7 357 69.2
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 3.0e-139 499.2 379 64.1
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 6.7e-139 498.0 386 63.7
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 8.7e-139 497.7 380 67.1
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.1e-138 497.3 411 61.3
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 2.5e-138 496.1 379 63.9
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.2e-132 477.2 391 61.4
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 2.7e-132 476.1 376 60.9
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 2.7e-132 476.1 378 63.2
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 3.0e-131 472.6 437 55.6
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 6.5e-126 454.9 348 65.2
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 8.5e-126 454.5 389 57.3
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 1.1e-125 454.1 397 58.9
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.1e-125 454.1 389 57.3
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 1.2e-124 450.7 386 59.1
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 7.9e-124 448.0 408 55.9
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 4.1e-120 435.6 366 62.3
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 1.3e-118 430.6 383 56.4
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 2.0e-114 416.8 298 68.5
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 4.8e-113 412.1 292 69.5
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 1.4e-112 410.6 292 68.5
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 1.8e-112 410.2 410 55.6
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 2.4e-112 409.8 376 55.1
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 1.7e-110 403.7 598 42.3
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 2.2e-110 403.3 379 54.9
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 2.5e-109 399.8 263 73.4
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 1.4e-107 394.0 383 50.9
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 3.9e-107 392.5 371 53.6
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 9.7e-106 387.9 257 72.0
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 2.4e-104 383.3 365 53.2
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 7.0e-104 381.7 375 55.7
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 1.9e-101 373.6 267 67.0
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 5.7e-98 362.1 242 71.9
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 2.2e-94 350.1 379 50.9
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 2.9e-94 349.7 254 65.7
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 8.5e-94 348.2 367 47.7
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 3.2e-93 346.3 406 45.3
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 1.4e-91 340.9 248 65.3
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 1.8e-91 340.5 247 65.2
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.5e-90 337.4 264 67.8
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 3.4e-90 336.3 251 64.1
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 2.9e-86 323.2 277 60.3
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 3.6e-84 316.2 271 60.9
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 4.4e-82 309.3 364 47.5
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 2.7e-79 300.1 194 72.7
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 8.3e-65 251.9 159 74.2
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 4.0e-59 233.0 289 49.5
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 3.4e-50 203.4 208 51.0
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 3.4e-50 203.4 239 48.5
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 5.4e-48 196.1 133 70.7
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 9.3e-40 168.7 115 66.1
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 6.0e-39 166.0 407 32.9
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 7.3e-37 159.1 125 64.8
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 1.8e-35 154.5 169 52.1
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 6.9e-35 152.5 106 68.9
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 8.4e-33 145.6 365 30.1
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 2.1e-31 141.0 174 47.1
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 2.6e-26 124.0 297 30.3
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 5.1e-22 109.8 102 54.9
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 1.4e-19 101.7 288 30.2
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 5.8e-18 96.3 70 61.4
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 1.7e-17 94.7 93 52.7
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 2.5e-16 90.9 93 50.5
PRCOL_00001266 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 7.1e-16 89.4 390 25.1
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 7.1e-16 89.4 91 48.4
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 2.7e-15 87.4 93 49.5
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 5.3e-11 73.2 53 62.3
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 1.2e-07 62.0 52 53.8
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 1.6e-07 61.6 71 49.3
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 1.4e-06 58.5 55 49.1


User provided reference genes

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