Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 8.7e-134 480.3 246 100.0
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 1.1e-115 420.2 246 85.4
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 2.2e-113 412.5 246 83.3
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.5e-111 405.2 246 82.9
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 7.9e-111 404.1 246 82.5
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 2.3e-110 402.5 247 81.8
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.3e-110 402.5 246 82.1
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 3.9e-110 401.7 246 84.1
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.9e-109 399.4 246 80.1
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.1e-107 393.7 246 79.3
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.4e-107 393.3 246 79.3
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 2.0e-106 389.4 264 76.5
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 8.5e-105 384.0 248 79.4
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 2.5e-104 382.5 249 81.1
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 3.2e-104 382.1 249 78.7
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 1.6e-103 379.8 250 79.2
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 2.7e-103 379.0 246 78.0
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 3.6e-103 378.6 247 79.8
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 7.9e-103 377.5 246 78.0
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 2.3e-102 375.9 248 77.4
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 3.9e-102 375.2 254 77.6
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 8.8e-102 374.0 248 77.4
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 4.3e-101 371.7 246 78.5
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 3.7e-100 368.6 250 79.2
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 3.7e-100 368.6 246 77.6
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 6.3e-100 367.9 247 77.3
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 6.3e-100 367.9 246 77.2
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.4e-99 366.7 251 76.9
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 4.1e-99 365.2 245 77.6
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 5.3e-99 364.8 248 77.4
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 6.9e-99 364.4 250 76.4
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 9.1e-99 364.0 249 74.3
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 2.0e-98 362.8 248 76.2
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 2.0e-98 362.8 256 75.0
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 3.4e-98 362.1 249 75.9
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 3.4e-98 362.1 249 75.9
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 7.7e-98 360.9 248 75.0
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 7.7e-98 360.9 248 75.4
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 1.3e-97 360.1 247 75.3
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 1.7e-97 359.8 250 76.0
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 2.2e-97 359.4 253 74.3
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 2.9e-97 359.0 249 75.1
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.9e-97 359.0 248 75.8
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.8e-97 358.6 248 76.6
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 3.8e-97 358.6 246 74.8
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.0e-97 358.2 248 76.2
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.0e-97 358.2 248 76.2
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.0e-97 358.2 248 76.2
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 5.0e-97 358.2 249 75.1
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 6.5e-97 357.8 251 75.3
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 6.5e-97 357.8 248 76.2
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 6.5e-97 357.8 248 75.8
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 8.5e-97 357.5 248 75.4
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 3.2e-96 355.5 249 74.3
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 7.2e-96 354.4 246 74.8
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.2e-96 354.4 248 75.8
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.1e-95 352.8 246 74.4
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 1.4e-94 350.1 250 73.6
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 1.8e-94 349.7 245 73.9
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 2.3e-94 349.4 248 73.4
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 3.9e-94 348.6 248 72.6
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 8.8e-94 347.4 246 74.0
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 1.5e-93 346.7 246 74.4
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 2.6e-93 345.9 251 72.1
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 3.3e-93 345.5 257 72.4
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 4.4e-93 345.1 247 71.3
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 4.4e-93 345.1 253 71.5
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 2.2e-92 342.8 249 72.3
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 2.8e-92 342.4 250 73.6
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 3.7e-92 342.0 246 74.4
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 3.7e-92 342.0 255 74.1
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 3.7e-92 342.0 241 72.6
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 6.3e-92 341.3 248 73.0
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 8.2e-92 340.9 246 71.5
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.1e-91 340.5 248 70.2
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.4e-91 340.1 249 72.7
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 1.8e-91 339.7 230 78.3
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 1.8e-91 339.7 251 70.5
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 1.8e-91 339.7 251 73.3
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 2.4e-91 339.3 249 73.5
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 3.1e-91 339.0 249 71.9
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 4.1e-91 338.6 252 70.6
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 9.1e-91 337.4 252 70.2
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 3.5e-90 335.5 252 69.0
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 7.7e-90 334.3 312 60.3
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 1.7e-89 333.2 247 68.8
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.9e-89 332.4 244 68.0
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 3.8e-89 332.0 252 68.3
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.1e-88 330.5 243 73.3
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 2.5e-88 329.3 248 68.5
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 3.2e-88 328.9 247 68.4
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 4.2e-88 328.6 249 68.3
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 4.2e-88 328.6 247 68.0
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 4.2e-88 328.6 251 67.3
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 1.2e-87 327.0 255 69.0
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 2.7e-87 325.9 247 67.6
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 3.6e-87 325.5 215 75.3
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.0e-86 323.9 237 71.7
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 1.4e-86 323.6 247 68.0
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.3e-86 322.8 237 71.7
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 8.8e-86 320.9 245 66.5
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 8.8e-86 320.9 252 68.7
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 8.8e-86 320.9 233 72.1
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 1.5e-85 320.1 252 66.3
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 4.4e-85 318.5 256 68.4
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 5.7e-85 318.2 256 68.0
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 7.5e-85 317.8 256 68.4
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 4.8e-84 315.1 243 65.4
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 8.2e-84 314.3 249 65.5
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 1.8e-83 313.2 238 71.0
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 5.3e-83 311.6 265 66.4
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.2e-82 310.5 252 69.4
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 1.2e-82 310.5 322 56.5
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 1.6e-82 310.1 238 70.6
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 4.5e-82 308.5 247 64.8
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 4.5e-82 308.5 241 68.0
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 7.7e-82 307.8 248 65.7
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 7.7e-82 307.8 248 65.7
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 7.7e-82 307.8 248 65.7
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.5e-80 302.8 222 70.7
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 7.2e-80 301.2 231 69.7
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 9.4e-80 300.8 248 64.5
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.6e-79 298.9 233 68.2
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 6.1e-79 298.1 248 66.9
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 6.1e-79 298.1 217 70.0
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 8.0e-79 297.7 239 67.8
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 8.0e-79 297.7 204 73.5
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 6.8e-78 294.7 244 66.0
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 5.7e-77 291.6 251 62.2
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 2.8e-76 289.3 252 62.7
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 5.0e-73 278.5 386 46.9
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 4.7e-71 271.9 249 57.4
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 8.8e-70 267.7 257 58.8
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.7e-68 263.5 232 60.8
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 8.3e-68 261.2 243 59.7
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 3.1e-67 259.2 240 61.7
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 5.9e-66 255.0 250 56.4
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 7.7e-66 254.6 150 80.7
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 1.4e-62 243.8 249 55.0
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 7.5e-61 238.0 214 59.8
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.7e-60 235.7 148 77.0
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 8.3e-60 234.6 167 70.1
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 5.4e-59 231.9 250 51.2
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.6e-58 228.8 167 68.9
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 1.3e-57 227.3 136 79.4
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 2.5e-56 223.0 249 53.0
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 1.9e-48 196.8 121 78.5
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 2.8e-47 193.0 274 44.2
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 6.2e-47 191.8 193 57.5
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 8.9e-46 188.0 287 43.6
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 2.0e-45 186.8 117 80.3
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 4.6e-42 175.6 129 74.4
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 1.7e-33 147.1 263 38.8
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.0e-33 146.4 129 64.3
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 1.6e-31 140.6 281 35.9
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 3.4e-29 132.9 100 72.0
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 8.7e-25 118.2 95 61.1
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 9.6e-24 114.8 89 68.5
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 6.2e-23 112.1 91 56.0
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 2.4e-22 110.2 69 73.9
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 3.1e-22 109.8 73 75.3
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 1.3e-20 104.4 73 71.2
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 2.3e-17 93.6 128 41.4
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 4.3e-16 89.4 121 52.9
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 1.6e-15 87.4 110 37.3
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.0e-13 80.5 78 57.7
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.6e-10 70.9 95 52.6
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.0e-09 68.2 81 45.7
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 1.3e-09 67.8 134 41.8
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 4.8e-07 59.3 160 27.5


User provided reference genes

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