Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1271 Acer truncatum HOM05D005741 ORTHO05D007240 1.0e-290 1002.7 502 100.0
Ciclev10019844m.g Citrus clementina HOM05D005741 ORTHO05D007240 6.6e-213 744.2 506 71.7
Thecc.03G247800 Theobroma cacao HOM05D005741 ORTHO05D007240 9.2e-191 670.6 499 66.3
THA.LOC104806667 Tarenaya hassleriana HOM05D005741 ORTHO05D007240 3.9e-189 665.2 510 63.7
Gorai.003G175200 Gossypium raimondii HOM05D005741 ORTHO05D007240 2.1e-187 659.4 500 64.8
Haze_07941 Corylus avellana HOM05D005741 ORTHO05D007240 4.7e-187 658.3 503 64.8
QL12p011266 Quercus lobata HOM05D005741 ORTHO05D007240 2.4e-186 656.0 504 65.9
CiPaw.11G082200 Carya illinoinensis HOM05D005741 ORTHO05D007240 4.4e-185 651.7 509 65.0
Gohir.D09G191200 Gossypium hirsutum HOM05D005741 ORTHO05D007240 4.4e-185 651.7 504 66.1
Gohir.D03G165500 Gossypium hirsutum HOM05D005741 ORTHO05D007240 9.9e-185 650.6 500 63.6
Potri.003G079400 Populus trichocarpa HOM05D005741 ORTHO05D007240 1.7e-184 649.8 505 65.5
CANSAT21G0669 Cannabis sativa HOM05D005741 ORTHO05D007240 3.8e-184 648.7 489 67.1
Manes.01G083800 Manihot esculenta HOM05D005741 ORTHO05D007240 3.8e-184 648.7 504 63.7
TWI15G0579 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 3.8e-184 648.7 501 64.5
Prupe.5G065000 Prunus persica HOM05D005741 ORTHO05D007240 1.1e-183 647.1 499 64.5
TWI81G0674 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 2.4e-183 646.0 501 62.9
Gorai.006G214000 Gossypium raimondii HOM05D005741 ORTHO05D007240 2.1e-182 642.9 504 65.3
Duzib084G1038 Durio zibethinus HOM05D005741 ORTHO05D007240 2.7e-182 642.5 466 67.4
C01p25020 Brassica napus HOM05D005741 ORTHO05D007240 6.0e-182 641.3 509 60.7
BolC1t02446H Brassica oleracea HOM05D005741 ORTHO05D007240 6.0e-182 641.3 509 60.7
Gohir.A09G196600 Gossypium hirsutum HOM05D005741 ORTHO05D007240 7.8e-182 641.0 503 65.0
BraA01t01920Z Brassica rapa HOM05D005741 ORTHO05D007240 1.0e-181 640.6 509 60.7
Thhalv10024957m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 1.3e-181 640.2 510 62.2
Sabra03G0049500 Salix brachista HOM05D005741 ORTHO05D007240 1.7e-181 639.8 444 70.7
Duzib205G0633 Durio zibethinus HOM05D005741 ORTHO05D007240 8.7e-181 637.5 462 68.4
BcaC09g50473 Brassica carinata HOM05D005741 ORTHO05D007240 1.5e-180 636.7 506 60.7
A01p19940 Brassica napus HOM05D005741 ORTHO05D007240 5.6e-180 634.8 509 59.7
CARHR224030 Cardamine hirsuta HOM05D005741 ORTHO05D007240 2.1e-179 632.9 513 61.4
Eucgr.E00405 Eucalyptus grandis HOM05D005741 ORTHO05D007240 4.8e-179 631.7 510 62.7
AL7G37290 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 1.8e-178 629.8 510 62.0
BcaNung00094 Brassica carinata HOM05D005741 ORTHO05D007240 2.0e-177 626.3 509 59.9
MD04G1060600 Malus domestica HOM05D005741 ORTHO05D007240 3.8e-176 622.1 499 63.1
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 8.4e-176 620.9 498 63.9
Carub.0007s2399 Capsella rubella HOM05D005741 ORTHO05D007240 2.4e-175 619.4 510 61.2
MELO3C005514.2 Cucumis melo HOM05D005741 ORTHO05D007240 2.7e-174 615.9 506 61.5
AT4G17430 Arabidopsis thaliana HOM05D005741 ORTHO05D007240 7.9e-174 614.4 509 60.5
Lj2A224T24 Lonicera japonica HOM05D005741 ORTHO05D007240 1.3e-173 613.6 493 62.3
Aa31sc151G50 Aethionema arabicum HOM05D005741 ORTHO05D007240 3.9e-173 612.1 509 59.9
FAN13G2335 Fragaria x ananassa HOM05D005741 ORTHO05D007240 8.7e-173 610.9 485 64.5
Nn6g33867 Nelumbo nucifera HOM05D005741 ORTHO05D007240 1.5e-172 610.1 482 62.7
RcHm_v2.0_Chr7g0204071 Rosa chinensis HOM05D005741 ORTHO05D007240 2.5e-172 609.4 494 63.8
FvH4_5g19490 Fragaria vesca HOM05D005741 ORTHO05D007240 7.4e-172 607.8 483 64.4
PGSC0003DMG400004829 Solanum tuberosum HOM05D005741 ORTHO05D007240 9.6e-172 607.4 489 63.6
CSS0012403 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.6e-171 606.7 501 62.1
Solyc08g078380.3 Solanum lycopersicum HOM05D005741 ORTHO05D007240 2.1e-171 606.3 489 63.6
GSVIVG01005817001 Vitis vinifera HOM05D005741 ORTHO05D007240 2.1e-171 606.3 482 63.5
Sopen08g026870 Solanum pennellii HOM05D005741 ORTHO05D007240 2.8e-171 605.9 489 63.8
Nitab4.5_0003050g0020 Nicotiana tabacum HOM05D005741 ORTHO05D007240 6.2e-171 604.7 490 63.3
FAN04G2833 Fragaria x ananassa HOM05D005741 ORTHO05D007240 3.1e-170 602.4 485 63.9
FAN18G1401 Fragaria x ananassa HOM05D005741 ORTHO05D007240 3.1e-170 602.4 483 64.0
FAN18G3259 Fragaria x ananassa HOM05D005741 ORTHO05D007240 6.9e-170 601.3 483 63.8
COL.COLO4_37119 Corchorus olitorius HOM05D005741 ORTHO05D007240 9.0e-170 600.9 407 69.0
PSO782G4316 Papaver somniferum HOM05D005741 ORTHO05D007240 1.6e-166 590.1 493 59.8
Nitab4.5_0001381g0010 Nicotiana tabacum HOM05D005741 ORTHO05D007240 2.1e-166 589.7 487 62.4
PSO063G3551 Papaver somniferum HOM05D005741 ORTHO05D007240 6.0e-166 588.2 492 59.6
CsaV3_5G004450 Cucumis sativus L. HOM05D005741 ORTHO05D007240 1.8e-165 586.6 429 66.0
Sed0015384 Sechium edule HOM05D005741 ORTHO05D007240 3.0e-165 585.9 506 58.7
Migut.A01137 Erythranthe guttata HOM05D005741 ORTHO05D007240 6.7e-165 584.7 488 60.9
Peaxi162Scf00214g00035 Petunia axillaris HOM05D005741 ORTHO05D007240 3.3e-164 582.4 490 61.6
Ca_17300_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 4.3e-164 582.0 487 58.7
Thhalv10000864m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 5.6e-164 581.6 510 57.8
Medtr8g104850 Medicago truncatula HOM05D005741 ORTHO05D007240 1.6e-163 580.1 485 59.6
FAN08G2842 Fragaria x ananassa HOM05D005741 ORTHO05D007240 2.1e-163 579.7 483 62.1
Lalb_Chr07g0190101 Lupinus albus HOM05D005741 ORTHO05D007240 4.0e-162 575.5 485 58.4
Lj2g0010165 Lotus japonicus HOM05D005741 ORTHO05D007240 5.3e-162 575.1 496 58.5
TPR.G32686 Trifolium pratense HOM05D005741 ORTHO05D007240 5.3e-162 575.1 492 57.5
HanXRQChr16g0501101 Helianthus annuus HOM05D005741 ORTHO05D007240 9.0e-162 574.3 495 59.6
Psat7g009600 Pisum sativum HOM05D005741 ORTHO05D007240 7.6e-161 571.2 484 58.1
vmacro00008 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 7.6e-161 571.2 550 54.7
CAN.G1178.14 Capsicum annuum HOM05D005741 ORTHO05D007240 1.0e-160 570.9 458 63.5
Glyma.13G055300 Glycine max HOM05D005741 ORTHO05D007240 4.9e-160 568.5 502 56.4
Ca_17307_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 1.1e-159 567.4 424 63.0
Aqoxy3G02814 Aquilegia oxysepala HOM05D005741 ORTHO05D007240 3.2e-159 565.8 459 61.4
DCAR_008509 Daucus carota HOM05D005741 ORTHO05D007240 4.2e-159 565.5 488 58.6
EL10Ac1g01729 Beta vulgaris HOM05D005741 ORTHO05D007240 5.5e-159 565.1 490 56.7
Lsat_1_v5_gn_6_59361 Lactuca sativa HOM05D005741 ORTHO05D007240 5.5e-159 565.1 493 58.6
ClCG01G004250 Citrullus lanatus HOM05D005741 ORTHO05D007240 7.9e-158 561.2 508 57.9
Phvul.004G038100 Phaseolus vulgaris HOM05D005741 ORTHO05D007240 1.5e-156 557.0 496 56.0
VMungo0464G0479 Vigna mungo HOM05D005741 ORTHO05D007240 1.9e-156 556.6 496 55.6
arahy.Tifrunner.gnm1.ann1.915X16 Arachis hypogaea HOM05D005741 ORTHO05D007240 2.5e-156 556.2 488 56.6
arahy.Tifrunner.gnm1.ann1.F09Q1T Arachis hypogaea HOM05D005741 ORTHO05D007240 2.2e-155 553.1 483 56.9
SGA_v2.0_scaffold199G41222 Striga asiatica HOM05D005741 ORTHO05D007240 3.7e-155 552.4 514 55.8
TAR629G0196 Trochodendron aralioides HOM05D005741 ORTHO05D007240 4.8e-155 552.0 402 66.9
Cc08_g12130 Coffea canephora HOM05D005741 ORTHO05D007240 1.3e-152 543.9 507 56.4
Gohir.A03G006700 Gossypium hirsutum HOM05D005741 ORTHO05D007240 7.4e-148 528.1 374 68.7
SalBow5G2168 Salvia bowleyana HOM05D005741 ORTHO05D007240 1.7e-147 526.9 466 58.2
Sc22g0001010 Simmondsia chinensis HOM05D005741 ORTHO05D007240 9.1e-146 521.2 421 59.4
CDE09G0915 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 2.6e-145 519.6 467 56.5
ATR0057G109 Amborella trichopoda HOM05D005741 ORTHO05D007240 4.5e-145 518.8 510 53.1
CDE02G0403 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 1.0e-144 517.7 471 55.8
AUR62022412 Chenopodium quinoa HOM05D005741 ORTHO05D007240 1.3e-144 517.3 401 62.1
PGR042G2173 Punica granatum HOM05D005741 ORTHO05D007240 1.7e-144 516.9 503 53.3
AUR62042169 Chenopodium quinoa HOM05D005741 ORTHO05D007240 2.2e-144 516.5 401 61.8
Rhsim03G0144800 Rhododendron simsii HOM05D005741 ORTHO05D007240 1.1e-143 514.2 495 54.5
SEGI_37405 Sequoiadendron giganteum HOM05D005741 ORTHO05D007240 5.1e-141 505.4 494 52.6
unitig_0.g1051 Utricularia gibba HOM05D005741 ORTHO05D007240 8.8e-141 504.6 484 52.7
SHI07684 Sapria himalayana HOM05D005741 ORTHO05D007240 5.7e-140 501.9 485 54.0
Hund30921 Selenicereus undatus HOM05D005741 ORTHO05D007240 7.4e-140 501.5 454 54.8
Os10g0561200 Oryza sativa ssp. japonica HOM05D005741 ORTHO05D007240 9.7e-140 501.1 496 52.2
Hund20780 Selenicereus undatus HOM05D005741 ORTHO05D007240 1.4e-138 497.3 455 54.7
Zm00001eb023170 Zea mays HOM05D005741 ORTHO05D007240 1.5e-137 493.8 497 52.1
TAR365G0013 Trochodendron aralioides HOM05D005741 ORTHO05D007240 1.4e-133 480.7 357 66.7
ECA233G5769 Erigeron canadensis HOM05D000263 ORTHO05D000213 5.2e-133 478.8 411 57.9
Dinv03497 Davidia involucrata HOM05D005741 ORTHO05D007240 7.4e-132 474.9 352 65.9
Hma1.2p1_1136F.1_g260550 Hydrangea macrophylla HOM05D005741 ORTHO05D007240 1.4e-130 470.7 348 64.9
Oeu036348.1 Olea europaea HOM05D005741 ORTHO05D007240 2.0e-124 450.3 347 62.2
CSS0035552 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 4.8e-123 445.7 342 64.0
Cc11_g11020 Coffea canephora HOM05D005741 ORTHO05D007240 2.5e-103 380.2 285 64.9
AagrBONN_evm.TU.Sc2ySwM_228.4051__4052 Anthoceros agrestis HOM05D005741 ORTHO05D007240 3.3e-95 353.2 438 44.1
Aa31LG6G180 Aethionema arabicum HOM05D005741 ORTHO05D007240 6.0e-89 332.4 316 55.4
Dinv39172 Davidia involucrata HOM05D005741 ORTHO05D007240 1.6e-86 324.3 231 68.0
QL05p056282 Quercus lobata HOM05D005741 ORTHO05D007240 1.4e-85 321.2 406 45.1
SMO358G0726 Selaginella moellendorffii HOM05D005741 ORTHO05D007240 2.0e-84 317.4 426 42.7
QL05p056241 Quercus lobata HOM05D005741 ORTHO05D007240 8.1e-78 295.4 211 68.7
QL05p056380 Quercus lobata HOM05D005741 ORTHO05D007240 1.4e-74 284.6 248 58.5
MD06G1054000 Malus domestica HOM05D005741 ORTHO05D007240 1.6e-73 281.2 200 68.0
Lj1g0021170 Lotus japonicus HOM05D005741 ORTHO05D007240 1.5e-68 264.6 417 38.8
Mapoly0027s0023 Marchantia polymorpha HOM05D005741 ORTHO05D007240 4.4e-68 263.1 514 35.4
Sed0012710 Sechium edule HOM05D005741 ORTHO05D007240 9.3e-58 228.8 333 41.4
Glyma.19G032167 Glycine max HOM05D005741 ORTHO05D007240 1.5e-52 211.5 180 57.8
Mapoly0048s0017 Marchantia polymorpha HOM05D005741 ORTHO05D007240 5.6e-47 193.0 455 29.7
CSS0043083 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.4e-45 187.6 165 55.8
Pp3c6_17590 Physcomitrium patens HOM05D005741 ORTHO05D007240 1.5e-39 168.3 237 38.0
vmacro00009 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 7.4e-39 166.0 196 47.4
Glyma.19G032233 Glycine max HOM05D005741 ORTHO05D007240 4.8e-38 163.3 167 51.5
vmacro00011 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 7.7e-36 156.0 280 37.9
Actinidia14404 Actinidia chinensis HOM05D005741 ORTHO05D007240 5.5e-34 149.8 335 32.2
CSS0008948 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 3.1e-29 134.0 112 61.6
CSS0012087 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 9.1e-29 132.5 116 58.6
CSS0007358 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.9e-27 127.5 114 57.0
Aa31LG6G170 Aethionema arabicum HOM05D005741 ORTHO05D007240 1.7e-22 111.7 111 49.5
Pp3c6_17579 Physcomitrium patens HOM05D005741 ORTHO05D007240 1.8e-21 108.2 79 63.3
Oeu057691.1 Olea europaea HOM05D005741 ORTHO05D007240 1.8e-16 91.7 73 61.6
Hma1.2p1_2773F.1_g328260 Hydrangea macrophylla HOM05D005741 ORTHO05D228475 1.5e-15 88.6 83 53.0
AL7G37230 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 1.9e-10 71.6 42 76.2


User provided reference genes

Program Settings