Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 1.1e-175 619.8 296 100.0
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 6.7e-149 530.8 301 83.1
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 5.0e-144 514.6 299 81.3
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 5.5e-143 511.1 305 80.7
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 2.7e-142 508.8 309 79.3
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 4.7e-142 508.1 305 80.0
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 8.0e-142 507.3 299 79.9
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 1.4e-138 496.5 297 78.1
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 3.1e-138 495.4 296 80.4
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 7.0e-138 494.2 305 77.4
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 2.2e-136 489.2 298 76.8
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 2.2e-136 489.2 287 78.0
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 2.9e-136 488.8 292 79.1
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 2.9e-136 488.8 292 79.1
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 3.8e-136 488.4 287 78.4
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 5.0e-136 488.0 292 79.1
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 6.5e-136 487.6 285 79.6
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 1.1e-135 486.9 293 76.8
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 1.5e-135 486.5 296 77.0
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 2.5e-135 485.7 304 77.3
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 2.5e-135 485.7 295 78.0
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 4.2e-135 485.0 295 76.3
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 4.2e-135 485.0 297 78.1
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 6.1e-134 481.1 296 76.4
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 8.0e-134 480.7 302 74.8
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 1.0e-133 480.3 294 75.9
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 1.8e-133 479.6 296 78.0
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 1.8e-133 479.6 297 76.1
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 1.8e-133 479.6 281 78.6
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 2.3e-133 479.2 296 77.0
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 3.0e-133 478.8 295 76.3
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 6.8e-133 477.6 286 78.3
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 8.8e-133 477.2 296 76.4
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 1.5e-132 476.5 295 75.9
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 1.5e-132 476.5 295 76.9
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 2.6e-132 475.7 294 74.8
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 2.6e-132 475.7 301 75.4
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 7.5e-132 474.2 293 75.4
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 9.8e-132 473.8 294 75.5
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.7e-131 473.0 295 76.9
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 1.7e-131 473.0 293 75.4
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 2.8e-131 472.2 296 75.7
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 2.8e-131 472.2 298 75.2
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 6.3e-131 471.1 301 74.4
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 6.3e-131 471.1 301 74.1
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 8.3e-131 470.7 295 75.6
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 8.3e-131 470.7 295 75.6
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 1.8e-130 469.5 302 73.8
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 1.8e-130 469.5 298 76.5
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 5.4e-130 468.0 302 73.8
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 5.4e-130 468.0 289 77.2
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 3.5e-129 465.3 296 74.3
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 4.5e-129 464.9 295 74.6
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 4.5e-129 464.9 291 75.9
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 5.9e-129 464.5 260 82.7
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 1.0e-128 463.8 327 69.4
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 1.3e-128 463.4 299 73.6
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 1.7e-128 463.0 293 75.4
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 2.9e-128 462.2 289 74.7
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 3.8e-128 461.8 294 73.8
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 1.5e-127 459.9 296 74.3
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 3.3e-127 458.8 290 73.8
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 7.3e-127 457.6 299 74.9
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 1.2e-126 456.8 295 72.9
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 1.2e-126 456.8 291 73.2
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 2.1e-126 456.1 291 72.2
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 4.7e-126 454.9 289 75.8
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 1.0e-125 453.8 288 72.9
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 4.0e-125 451.8 297 73.7
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 5.2e-125 451.4 290 73.4
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 8.9e-125 450.7 299 72.9
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 2.0e-124 449.5 290 73.4
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 2.6e-124 449.1 277 75.8
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 5.7e-124 448.0 292 71.6
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 9.8e-124 447.2 260 80.4
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 9.8e-124 447.2 291 71.8
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 4.9e-123 444.9 262 79.0
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 1.8e-122 443.0 295 70.8
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 1.8e-122 443.0 301 70.4
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 3.2e-122 442.2 288 73.6
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 5.4e-122 441.4 311 68.2
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 7.0e-122 441.0 295 69.8
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 4.6e-121 438.3 275 73.8
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 8.6e-120 434.1 290 71.0
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 2.5e-119 432.6 408 56.4
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 1.2e-116 423.7 286 70.6
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 3.7e-115 418.7 309 68.3
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 4.9e-115 418.3 265 75.5
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 1.9e-114 416.4 246 81.3
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 1.9e-114 416.4 278 70.9
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 1.6e-113 413.3 299 68.6
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 1.6e-113 413.3 299 68.6
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 7.8e-113 411.0 296 68.6
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 5.0e-112 408.3 271 72.0
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 1.1e-111 407.1 274 70.4
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 4.0e-109 398.7 320 61.9
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 1.3e-104 383.6 243 73.7
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 2.3e-104 382.9 212 84.4
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 5.2e-101 371.7 260 69.6
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 2.6e-100 369.4 211 82.0
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 1.3e-99 367.1 258 66.7
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 4.1e-98 362.1 249 70.3
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 8.6e-96 354.4 285 62.5
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 7.3e-95 351.3 258 68.2
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 1.4e-90 337.0 265 65.3
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 1.9e-90 336.7 202 77.2
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 2.4e-90 336.3 202 77.7
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 1.1e-74 284.3 295 52.9
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 2.5e-71 273.1 258 52.7
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 5.6e-71 271.9 269 50.9
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 2.8e-70 269.6 202 66.8
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 5.7e-63 245.4 276 50.7
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 4.8e-54 215.7 262 45.0
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 2.4e-53 213.4 183 60.7
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 4.1e-53 212.6 290 45.9
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 2.6e-52 209.9 128 77.3
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 4.6e-49 199.1 142 69.7
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 1.4e-40 171.0 97 82.5
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 3.7e-38 162.9 163 55.2
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 4.0e-32 142.9 81 77.8
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 4.0e-32 142.9 87 78.2
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 4.8e-30 136.0 105 62.9
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 7.0e-29 132.1 66 83.3
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 3.2e-18 96.7 67 68.7
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 2.2e-14 84.0 56 67.9
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 5.0e-11 72.8 57 61.4
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 2.3e-08 63.9 41 70.7
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 3.0e-08 63.5 33 81.8


User provided reference genes

Program Settings