Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 1.5e-139 499.6 261 100.0
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 1.6e-90 336.7 268 69.0
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.1e-86 323.9 258 66.3
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 1.1e-86 323.9 258 66.3
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 1.4e-86 323.6 259 67.2
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 5.5e-86 321.6 259 66.4
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.2e-85 320.5 258 65.5
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 1.8e-81 306.6 256 65.6
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 6.9e-81 304.7 263 63.1
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 5.9e-80 301.6 267 61.4
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 9.7e-75 284.3 266 62.4
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 1.7e-74 283.5 271 59.0
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 6.3e-74 281.6 226 61.5
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 6.3e-74 281.6 267 58.8
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 9.1e-73 277.7 267 56.6
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 1.5e-72 276.9 229 59.8
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 1.0e-71 274.2 226 60.6
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 6.5e-71 271.6 257 55.3
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 4.2e-70 268.9 233 57.9
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 5.5e-70 268.5 261 55.6
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 5.5e-70 268.5 227 58.1
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 2.1e-69 266.5 269 55.0
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 7.9e-69 264.6 231 56.3
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 3.0e-68 262.7 224 60.3
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 3.0e-68 262.7 224 60.3
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 8.8e-68 261.2 266 54.5
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 4.4e-67 258.8 237 57.0
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 5.7e-67 258.5 231 58.0
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 5.7e-67 258.5 209 67.5
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 9.7e-67 257.7 274 54.4
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 1.7e-66 256.9 273 53.5
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 3.7e-66 255.8 226 58.0
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 3.7e-66 255.8 231 56.7
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 1.1e-65 254.2 266 51.1
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 1.8e-65 253.4 269 52.0
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 3.1e-65 252.7 265 53.6
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 4.1e-65 252.3 257 51.8
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 9.1e-65 251.1 265 53.2
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 1.2e-64 250.8 267 52.4
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 1.2e-64 250.8 269 53.9
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 1.2e-64 250.8 239 56.1
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 1.6e-64 250.4 226 55.8
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 2.0e-64 250.0 268 53.4
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 2.0e-64 250.0 268 53.4
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 2.0e-64 250.0 268 53.4
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 3.5e-64 249.2 268 51.1
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 5.9e-64 248.4 233 56.7
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 3.8e-63 245.7 257 49.4
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 6.5e-63 245.0 265 51.7
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 6.5e-63 245.0 265 51.7
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 6.5e-63 245.0 259 51.0
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 8.5e-63 244.6 236 55.5
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 6.1e-61 238.4 250 54.0
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 1.8e-60 236.9 233 56.7
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 2.0e-59 233.4 218 57.3
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 4.4e-59 232.3 284 47.2
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 2.2e-58 229.9 261 53.3
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 6.3e-58 228.4 218 56.4
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 8.2e-58 228.0 269 50.2
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.1e-57 227.6 205 61.5
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 1.1e-57 227.6 266 47.4
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 2.4e-57 226.5 149 73.8
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 2.4e-57 226.5 205 61.5
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 1.0e-55 221.1 259 51.7
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.0e-55 221.1 243 49.8
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 1.0e-55 221.1 182 59.9
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 2.9e-55 219.5 183 58.5
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 6.5e-55 218.4 183 57.9
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 1.5e-54 217.2 229 48.9
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 7.2e-54 214.9 212 53.3
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 4.7e-53 212.2 228 49.1
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.2e-51 207.6 216 50.0
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 6.3e-50 201.8 257 42.4
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 2.4e-49 199.9 163 63.2
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 1.3e-47 194.1 213 49.8
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 2.2e-47 193.4 244 43.9
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 3.8e-47 192.6 245 45.7
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 5.0e-47 192.2 154 60.4
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 5.0e-47 192.2 259 42.1
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 6.5e-47 191.8 166 62.0
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 1.5e-46 190.7 177 57.1
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 9.4e-46 188.0 225 45.8
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 8.0e-45 184.9 211 47.9
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 8.0e-45 184.9 321 37.7
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 1.0e-44 184.5 266 41.0
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 1.2e-43 181.0 215 47.0
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 1.3e-42 177.6 157 58.6
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 1.8e-41 173.7 146 61.6
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 2.4e-41 173.3 143 60.1
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 3.1e-41 172.9 265 39.2
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 7.0e-41 171.8 146 61.0
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 9.2e-41 171.4 146 60.3
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 4.5e-40 169.1 268 38.8
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 2.3e-39 166.8 145 58.6
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 2.9e-39 166.4 149 59.1
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 6.6e-39 165.2 145 57.9
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 1.1e-38 164.5 144 59.7
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 1.5e-38 164.1 156 55.8
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 2.5e-38 163.3 244 40.6
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 2.8e-37 159.8 227 37.9
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 6.1e-37 158.7 278 32.7
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 2.3e-36 156.8 154 57.1
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 8.9e-36 154.8 150 56.0
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 2.0e-35 153.7 142 59.2
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 2.0e-35 153.7 146 57.5
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 2.0e-35 153.7 153 54.2
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 2.6e-35 153.3 153 54.2
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 1.3e-34 151.0 127 54.3
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 2.2e-34 150.2 232 37.1
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 8.3e-34 148.3 231 37.2
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 3.0e-31 139.8 146 52.1
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 2.8e-29 133.3 148 50.7
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 1.4e-28 131.0 260 33.1
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 3.1e-28 129.8 115 58.3
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 5.2e-20 102.4 86 51.2
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 1.3e-18 97.8 144 42.4
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 2.9e-18 96.7 66 65.2
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 3.4e-11 73.2 71 49.3
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 4.1e-09 66.2 60 45.0
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 5.4e-09 65.9 74 40.5
Pp3c9_18230 Physcomitrium patens HOM05D011398 ORTHO05D007243 1.5e-06 57.8 112 29.5


User provided reference genes

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