Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 8.2e-249 863.2 424 100.0
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 2.3e-203 712.2 424 82.5
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 8.6e-198 693.7 424 80.0
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 6.2e-196 687.6 424 78.3
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 3.1e-195 685.3 427 78.9
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 4.0e-195 684.9 427 78.7
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 1.2e-194 683.3 427 78.7
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 4.9e-193 677.9 427 78.2
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.0e-190 670.2 425 76.7
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 6.6e-190 667.5 423 78.3
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 2.1e-188 662.5 429 75.8
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 1.8e-187 659.4 421 75.1
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 5.2e-187 657.9 426 77.0
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 4.4e-186 654.8 422 76.3
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 1.6e-183 646.4 424 73.8
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 2.3e-182 642.5 428 73.1
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 1.1e-181 640.2 430 73.0
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 7.3e-181 637.5 426 74.4
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 8.1e-180 634.0 435 72.6
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 1.1e-179 633.6 422 73.5
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 3.4e-178 628.6 424 73.3
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 7.6e-178 627.5 421 72.7
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 3.8e-177 625.2 429 73.0
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 1.1e-176 623.6 422 72.7
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 1.9e-176 622.9 422 71.8
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 2.4e-176 622.5 422 72.0
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 4.2e-176 621.7 424 71.9
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 7.1e-176 620.9 422 71.3
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 1.6e-175 619.8 422 72.0
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 1.6e-175 619.8 424 72.9
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 2.7e-175 619.0 435 70.8
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 4.6e-175 618.2 425 70.4
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 1.7e-174 616.3 435 70.6
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 2.3e-174 615.9 425 73.6
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 8.7e-174 614.0 422 71.1
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 1.1e-173 613.6 431 70.3
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 1.9e-173 612.8 419 71.1
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 1.9e-173 612.8 435 69.0
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 4.3e-173 611.7 421 70.5
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 4.3e-173 611.7 421 70.1
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 5.6e-173 611.3 424 69.8
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 1.3e-172 610.1 387 77.5
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 1.6e-172 609.8 424 68.4
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 1.1e-171 607.1 419 70.2
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 1.4e-171 606.7 416 70.4
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 1.4e-171 606.7 429 70.6
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 1.8e-171 606.3 421 70.8
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 2.4e-171 605.9 419 70.2
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 4.0e-171 605.1 429 70.6
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 6.9e-171 604.4 424 71.2
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 9.0e-171 604.0 427 70.7
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 1.5e-170 603.2 426 68.8
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 2.0e-170 602.8 419 69.9
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 2.6e-170 602.4 423 71.4
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 7.6e-170 600.9 424 70.5
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 9.9e-170 600.5 416 70.0
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 2.2e-169 599.4 416 69.5
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 2.9e-169 599.0 410 70.7
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 3.8e-169 598.6 424 68.4
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 1.1e-168 597.0 489 64.6
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 3.2e-168 595.5 422 70.1
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 3.5e-167 592.0 423 69.0
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 4.6e-167 591.7 385 75.3
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 7.9e-167 590.9 478 63.6
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 1.0e-166 590.5 418 67.9
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 3.9e-166 588.6 457 65.9
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 6.7e-166 587.8 422 69.0
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 6.2e-164 581.3 445 66.7
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 6.2e-164 581.3 431 67.3
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 8.1e-164 580.9 427 67.7
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 1.1e-163 580.5 429 68.1
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 5.3e-163 578.2 418 67.2
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 1.2e-162 577.0 428 64.5
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 2.0e-162 576.2 418 66.3
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 4.5e-162 575.1 422 67.8
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 9.9e-162 573.9 449 64.6
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 3.8e-161 572.0 394 71.8
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 1.0e-158 563.9 424 66.5
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 5.1e-158 561.6 435 64.8
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 1.1e-157 560.5 390 69.2
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 3.7e-156 555.4 395 68.9
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 6.2e-156 554.7 421 67.0
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 3.1e-155 552.4 395 69.9
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 1.0e-153 547.4 416 64.4
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.3e-153 547.0 423 66.4
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 4.9e-153 545.0 331 78.5
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 7.1e-152 541.2 423 66.0
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.0e-150 537.3 423 65.0
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 3.0e-150 535.8 448 63.8
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.3e-149 531.9 461 61.2
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 2.8e-148 529.3 421 62.9
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 5.1e-142 508.4 314 79.3
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 1.1e-139 500.7 316 73.1
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 1.1e-139 500.7 299 74.9
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 1.1e-139 500.7 414 61.8
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 9.1e-139 497.7 421 62.5
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 5.9e-138 495.0 305 75.7
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 1.3e-137 493.8 337 70.3
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 1.9e-136 490.0 299 76.9
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 4.4e-133 478.8 337 69.1
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 5.3e-131 471.9 422 56.9
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 3.3e-125 452.6 422 57.6
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.3e-124 450.7 328 67.4
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 5.9e-122 441.8 435 54.3
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 7.7e-122 441.4 425 52.0
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 5.5e-120 435.3 423 54.6
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 3.1e-115 419.5 427 50.6
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 1.2e-114 417.5 406 51.5
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 6.1e-103 378.6 278 68.3
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.7e-101 372.1 320 60.6
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 7.0e-99 365.2 316 55.4
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.7e-92 344.0 302 59.6
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 6.2e-87 325.5 278 62.6
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 4.1e-75 286.2 183 66.7
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 3.1e-70 270.0 374 43.6
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 9.2e-67 258.5 229 52.4
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 9.2e-67 258.5 455 36.3
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 1.7e-57 227.6 579 30.9
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 1.4e-51 208.0 432 34.7
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 2.1e-47 194.1 251 46.6
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 1.2e-45 188.3 136 68.4
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 2.9e-44 183.7 119 74.8
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 5.5e-43 179.5 129 68.2
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 1.2e-42 178.3 210 47.1
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 5.6e-40 169.5 116 69.0
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 3.3e-32 143.7 122 66.4
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 3.2e-27 127.1 144 53.5
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 5.3e-22 109.8 256 34.4
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 1.0e-20 105.5 116 46.6
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 4.8e-15 86.7 60 66.7
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 7.2e-11 72.8 108 45.4
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 8.8e-09 65.9 62 54.8
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 3.7e-07 60.5 64 48.4


User provided reference genes

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