Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 1.5e-81 306.2 165 100.0
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 6.0e-54 214.5 156 75.6
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 2.4e-47 192.6 156 70.5
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 3.2e-47 192.2 163 70.6
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 2.7e-46 189.1 161 70.8
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 7.8e-46 187.6 161 68.9
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 3.0e-45 185.7 161 68.9
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 1.5e-44 183.3 159 62.3
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 1.5e-44 183.3 145 69.7
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 9.5e-44 180.6 158 69.6
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 1.6e-43 179.9 165 62.4
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 6.2e-43 177.9 158 69.0
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.8e-42 176.4 163 63.8
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 1.8e-42 176.4 162 61.7
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 4.0e-42 175.3 159 66.0
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 1.2e-41 173.7 159 63.5
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 2.0e-41 172.9 159 65.4
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 2.6e-41 172.6 168 61.3
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 7.6e-41 171.0 156 64.7
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 9.9e-41 170.6 155 65.2
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 2.9e-40 169.1 156 64.7
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.9e-40 168.3 159 60.4
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 8.4e-40 167.5 159 61.0
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.4e-39 166.8 162 63.6
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 1.9e-39 166.4 156 64.7
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 3.2e-39 165.6 153 66.0
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 4.1e-39 165.2 164 61.0
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 9.2e-39 164.1 160 63.8
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 9.2e-39 164.1 155 60.6
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 9.2e-39 164.1 142 66.2
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 2.7e-38 162.5 154 61.7
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 4.6e-38 161.8 157 63.1
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.0e-37 160.6 163 58.3
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 1.3e-37 160.2 156 60.9
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 3.0e-37 159.1 147 63.3
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 3.9e-37 158.7 157 63.1
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 5.1e-37 158.3 158 63.9
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 5.1e-37 158.3 155 61.9
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 5.1e-37 158.3 157 59.9
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 1.5e-36 156.8 148 62.8
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 2.5e-36 156.0 159 59.7
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 4.3e-36 155.2 148 63.5
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 7.3e-36 154.5 157 60.5
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 9.6e-36 154.1 152 61.2
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 1.2e-35 153.7 155 59.4
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 1.6e-35 153.3 156 59.6
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 1.6e-35 153.3 156 59.6
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 2.1e-35 152.9 163 57.7
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 2.1e-35 152.9 126 69.8
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 4.7e-35 151.8 158 60.1
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 6.2e-35 151.4 145 58.6
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 2.4e-34 149.4 148 60.8
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 5.2e-34 148.3 176 56.2
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 1.2e-33 147.1 147 61.2
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 1.2e-33 147.1 161 57.1
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 1.5e-33 146.7 148 62.2
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 3.4e-33 145.6 166 52.4
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 4.4e-33 145.2 159 58.5
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 4.4e-33 145.2 153 56.2
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 9.9e-33 144.1 136 61.8
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 1.7e-32 143.3 158 58.9
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 3.8e-32 142.1 156 56.4
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 4.9e-32 141.7 153 54.2
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 8.4e-32 141.0 160 56.2
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 1.4e-31 140.2 154 57.8
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 1.9e-31 139.8 185 49.7
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 3.2e-31 139.0 160 55.6
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 3.2e-31 139.0 157 59.2
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 3.2e-31 139.0 161 60.2
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 9.3e-31 137.5 152 56.6
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.2e-30 137.1 166 51.8
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 1.6e-30 136.7 146 58.9
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 1.6e-30 136.7 156 57.1
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 1.6e-30 136.7 144 57.6
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 2.1e-30 136.3 152 55.9
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 7.8e-30 134.4 152 55.3
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 7.8e-30 134.4 152 55.3
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 7.8e-30 134.4 176 50.6
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.0e-29 134.0 134 61.2
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 1.3e-29 133.7 138 58.0
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 1.3e-29 133.7 138 58.0
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.3e-29 133.7 142 57.7
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.3e-29 132.9 154 52.6
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 6.6e-29 131.3 159 56.6
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 6.6e-29 131.3 136 58.8
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 8.7e-29 131.0 161 50.9
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 7.3e-28 127.9 166 53.6
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 9.6e-28 127.5 165 51.5
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 1.3e-27 127.1 158 53.2
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.1e-27 126.3 148 58.1
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 2.1e-27 126.3 161 52.8
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.8e-27 125.9 148 58.1
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 4.8e-27 125.2 148 57.4
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 4.8e-27 125.2 128 57.8
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 8.1e-27 124.4 163 49.7
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 8.1e-27 124.4 163 49.7
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 1.1e-26 124.0 155 53.5
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.4e-26 123.6 126 64.3
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 1.8e-26 123.2 114 65.8
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 2.4e-26 122.9 138 56.5
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 2.4e-26 122.9 153 49.0
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 4.0e-26 122.1 190 47.4
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 9.0e-26 120.9 122 58.2
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 2.0e-25 119.8 167 49.7
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.6e-25 119.4 148 56.8
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 2.6e-25 119.4 159 51.6
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 5.8e-25 118.2 155 47.7
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 9.9e-25 117.5 171 50.3
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 1.3e-24 117.1 147 53.7
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 2.2e-24 116.3 145 55.2
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 2.9e-24 115.9 152 49.3
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.2e-23 112.5 154 49.4
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 1.6e-22 110.2 92 66.3
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 3.5e-22 109.0 140 48.6
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 6.0e-22 108.2 118 58.5
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 6.7e-21 104.8 156 46.2
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 1.5e-20 103.6 154 49.4
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 2.5e-20 102.8 145 48.3
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 8.1e-19 97.8 163 44.8
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.1e-18 97.4 104 57.7
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 2.4e-18 96.3 119 52.9
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 1.2e-17 94.0 119 52.1
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 4.5e-17 92.0 171 42.7
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 7.6e-17 91.3 115 54.8
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 1.7e-16 90.1 146 45.2
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 3.8e-16 89.0 83 61.4
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 9.3e-15 84.3 88 56.8
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.6e-14 83.6 112 51.8
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.5e-14 82.4 100 50.0
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 1.3e-13 80.5 85 61.2
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 1.8e-13 80.1 113 48.7
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.9e-13 79.0 65 61.5
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 5.1e-13 78.6 67 64.2
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 1.4e-10 70.5 59 67.8
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 5.3e-10 68.6 115 42.6
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 5.3e-10 68.6 161 38.5
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 3.4e-09 65.9 85 54.1
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 1.0e-08 64.3 55 63.6
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 1.3e-08 63.9 93 49.5
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.9e-08 62.8 73 47.9
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.9e-07 60.1 76 48.7
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.9e-07 60.1 76 48.7
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.5e-07 58.5 76 47.4
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 5.5e-07 58.5 62 50.0
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.1e-07 58.2 53 56.6
SEGI_01314 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 9.3e-07 57.8 44 68.2
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 3.5e-06 55.8 59 57.6


User provided reference genes

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