Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 2018.4 1024 100.0
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1478.0 1012 74.8
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1437.6 1017 71.6
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1430.6 1018 71.7
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1416.4 1018 71.4
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1410.2 1005 71.0
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1380.5 1014 69.6
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1377.8 1012 69.1
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1374.4 1012 69.7
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1370.1 1010 69.3
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1369.0 1013 68.2
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1367.4 1006 68.9
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1367.4 1010 69.3
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1362.8 1013 69.3
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1359.4 1019 68.0
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1351.3 1049 65.8
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1346.6 1018 67.6
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1343.6 1006 67.6
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1340.5 1015 67.6
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1336.2 1020 67.4
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1335.5 1015 67.5
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1327.8 1020 67.2
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1327.4 1015 67.0
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1325.5 1010 67.1
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 0.0e+00 1316.2 999 67.6
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1309.3 1026 65.3
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 0.0e+00 1302.7 1014 65.2
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1288.9 1014 64.4
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 0.0e+00 1288.1 1016 64.0
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 0.0e+00 1287.7 1017 65.6
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 0.0e+00 1284.6 1024 64.6
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1284.2 1014 63.9
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 0.0e+00 1283.5 1028 64.6
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 0.0e+00 1281.5 905 71.8
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1266.9 1020 63.6
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1266.1 1012 63.8
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1265.0 994 65.3
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1261.5 988 64.2
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 0.0e+00 1255.7 1074 61.3
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1253.0 1011 63.7
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1248.8 1018 63.5
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 0.0e+00 1248.4 986 63.9
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 0.0e+00 1246.9 1013 62.7
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 0.0e+00 1228.4 1015 62.4
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 0.0e+00 1228.0 991 63.7
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1221.1 1019 62.0
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 0.0e+00 1214.1 1013 62.0
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 0.0e+00 1203.3 1049 60.6
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 0.0e+00 1199.5 1016 62.1
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 0.0e+00 1198.7 1029 61.4
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1192.2 1017 60.6
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 0.0e+00 1191.8 997 62.0
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 0.0e+00 1185.6 1010 60.3
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 0.0e+00 1182.5 1017 60.0
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 0.0e+00 1181.0 1015 61.2
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 0.0e+00 1177.9 1011 60.2
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 0.0e+00 1177.2 1022 60.7
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 0.0e+00 1176.0 1021 59.6
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 0.0e+00 1171.0 1016 60.5
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1170.2 1010 60.7
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1167.1 1009 60.4
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 0.0e+00 1162.1 1012 60.2
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 0.0e+00 1161.4 1014 59.7
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 0.0e+00 1160.2 1024 59.0
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 0.0e+00 1159.4 1020 58.7
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 0.0e+00 1156.0 1021 58.5
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 0.0e+00 1153.3 1021 59.3
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 0.0e+00 1149.0 1015 59.2
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 0.0e+00 1144.4 1015 59.2
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 0.0e+00 1142.5 1024 59.6
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 0.0e+00 1141.7 1010 59.9
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 0.0e+00 1141.3 1021 59.1
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 0.0e+00 1136.7 1020 58.5
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 0.0e+00 1123.2 1035 57.8
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 0.0e+00 1121.3 1010 59.3
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 0.0e+00 1120.1 1029 55.6
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 0.0e+00 1113.6 1004 58.3
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 0.0e+00 1112.4 904 63.1
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 0.0e+00 1104.4 848 67.8
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1094.0 945 59.5
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 2.4e-310 1068.9 1018 57.2
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 2.0e-309 1065.8 1012 56.9
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 4.2e-307 1058.1 1029 56.5
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 3.6e-306 1055.0 1008 56.2
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 6.7e-305 1050.8 1004 55.6
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 1.7e-303 1046.2 980 57.8
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 1.4e-302 1043.1 1022 54.3
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 2.7e-290 1002.3 1013 54.2
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 6.1e-290 1001.1 1012 51.5
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 8.5e-284 980.7 994 51.2
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 6.1e-282 974.5 1029 53.0
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 5.7e-272 941.4 737 64.9
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 1.8e-270 936.4 771 63.8
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 3.5e-221 772.7 695 59.7
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 3.1e-209 733.0 593 61.6
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.7e-207 727.2 648 58.3
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 6.4e-207 725.3 648 58.2
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 5.9e-192 675.6 614 60.6
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 3.8e-183 646.4 560 63.9
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 1.6e-165 587.8 1078 35.1
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 3.0e-164 583.6 1092 37.2
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 3.2e-158 563.5 526 58.0
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 1.7e-138 498.0 967 36.1
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 1.7e-135 488.0 346 71.1
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 2.0e-115 421.4 394 52.5
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.2e-104 385.6 442 46.4
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 1.5e-102 378.6 1114 28.5
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 4.8e-101 373.6 331 61.0
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 9.9e-99 365.9 1124 28.0
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 2.6e-91 341.3 366 50.3
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 1.2e-75 289.3 259 58.7
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 6.5e-66 256.9 562 35.2
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 2.0e-62 245.4 223 57.0
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 5.7e-54 217.2 232 52.2
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 8.2e-53 213.4 144 72.2
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 2.0e-46 192.2 148 68.9
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 7.7e-35 153.7 225 40.0
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 6.6e-34 150.6 149 45.6
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 6.6e-34 150.6 167 49.1
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 2.7e-27 128.6 422 28.2
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 8.6e-26 123.6 145 44.8
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 7.3e-25 120.6 105 57.1
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.5e-22 112.8 79 60.8
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 3.7e-21 108.2 131 46.6
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 5.0e-18 97.8 217 36.4
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 5.0e-18 97.8 77 54.5
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 8.6e-18 97.1 81 54.3
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 2.5e-17 95.5 64 67.2
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 3.3e-17 95.1 81 53.1
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 1.6e-16 92.8 236 33.1
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 6.8e-15 87.4 55 74.5
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 6.8e-15 87.4 55 74.5
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 2.6e-14 85.5 64 62.5
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 9.8e-14 83.6 94 46.8
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 8.3e-13 80.5 108 44.4
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 6.6e-10 70.9 44 72.7
MD00G1179800 Malus domestica HOM05D005223 ORTHO05D006449 8.1e-08 63.9 52 57.7
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 8.1e-08 63.9 144 38.9
MD06G1154000 Malus domestica HOM05D005223 ORTHO05D006449 2.0e-06 59.3 47 51.1


User provided reference genes

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