Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.830 Acer truncatum HOM05D007356 ORTHO05D009247 4.5e-245 850.9 451 100.0
Ciclev10011716m.g Citrus clementina HOM05D007356 ORTHO05D009247 9.3e-158 560.8 453 66.4
Haze_14128 Corylus avellana HOM05D007356 ORTHO05D009247 3.9e-140 502.3 470 59.1
Cfa007946 Carpinus fangiana HOM05D007356 ORTHO05D009247 3.7e-138 495.7 469 60.1
Prupe.3G239800 Prunus persica HOM05D007356 ORTHO05D009247 6.2e-138 495.0 476 58.2
Potri.017G112500 Populus trichocarpa HOM05D007356 ORTHO05D009247 8.4e-135 484.6 448 57.4
Manes.01G108100 Manihot esculenta HOM05D007356 ORTHO05D009247 2.5e-131 473.0 455 58.9
Cpa.g.sc179.26 Carica papaya HOM05D007356 ORTHO05D009247 1.2e-128 464.2 465 57.0
MD09G1084700 Malus domestica HOM05D007356 ORTHO05D009247 1.4e-126 457.2 473 56.4
CANSAT64G1351 Cannabis sativa HOM05D007356 ORTHO05D009247 2.5e-126 456.4 472 53.6
QL02p052579 Quercus lobata HOM05D007356 ORTHO05D009247 9.7e-123 444.5 562 48.0
CsaV3_3G020350 Cucumis sativus L. HOM05D007356 ORTHO05D009247 2.9e-119 433.0 482 51.7
ClCG05G012060 Citrullus lanatus HOM05D007356 ORTHO05D009247 8.5e-119 431.4 476 51.7
Lj2g0005002 Lotus japonicus HOM05D007356 ORTHO05D009247 1.9e-118 430.3 463 53.6
MD17G1074100 Malus domestica HOM05D007356 ORTHO05D009247 2.5e-118 429.9 489 52.1
Thecc.04G137600 Theobroma cacao HOM05D007356 ORTHO05D009247 2.5e-118 429.9 465 52.0
arahy.Tifrunner.gnm1.ann1.3VIJ8X Arachis hypogaea HOM05D007356 ORTHO05D009247 3.0e-116 422.9 465 51.6
TWI31G0521 Tripterygium wilfordii HOM05D007356 ORTHO05D009247 3.0e-116 422.9 465 54.4
Sabra17G0093200 Salix brachista HOM05D007356 ORTHO05D009247 6.7e-116 421.8 463 52.1
arahy.Tifrunner.gnm1.ann1.33CL05 Arachis hypogaea HOM05D007356 ORTHO05D009247 8.8e-116 421.4 462 51.5
Duzib133G0592 Durio zibethinus HOM05D007356 ORTHO05D009247 5.7e-115 418.7 472 51.7
FAN14G2396 Fragaria x ananassa HOM05D007356 ORTHO05D009247 6.3e-114 415.2 456 53.7
FvH4_6g45360 Fragaria vesca HOM05D007356 ORTHO05D009247 1.4e-113 414.1 459 53.6
COL.COLO4_16192 Corchorus olitorius HOM05D007356 ORTHO05D009247 1.6e-109 400.6 463 51.6
THA.LOC104820954 Tarenaya hassleriana HOM05D007356 ORTHO05D009247 2.1e-109 400.2 472 48.5
Dinv34849 Davidia involucrata HOM05D007356 ORTHO05D009247 3.9e-108 396.0 431 51.7
Gohir.A11G162300 Gossypium hirsutum HOM05D007356 ORTHO05D009247 8.8e-108 394.8 469 48.6
Hma1.2p1_0136F.1_g062070 Hydrangea macrophylla HOM05D007356 ORTHO05D009247 1.1e-107 394.4 474 48.7
TWI79G1397 Tripterygium wilfordii HOM05D007356 ORTHO05D009247 1.7e-106 390.6 425 53.6
TAR374G1737 Trochodendron aralioides HOM05D007356 ORTHO05D009247 1.4e-105 387.5 494 47.6
Gorai.007G180100 Gossypium raimondii HOM05D007356 ORTHO05D009247 9.1e-105 384.8 464 48.7
Potri.004G102400 Populus trichocarpa HOM05D007356 ORTHO05D009247 9.1e-105 384.8 375 57.1
Gohir.D11G168600 Gossypium hirsutum HOM05D007356 ORTHO05D009247 3.8e-103 379.4 460 48.7
Lalb_Chr06g0174681 Lupinus albus HOM05D007356 ORTHO05D009247 6.5e-103 378.6 458 49.8
Glyma.13G047100 Glycine max HOM05D007356 ORTHO05D009247 5.5e-102 375.6 465 49.7
Rhsim10G0063400 Rhododendron simsii HOM05D007356 ORTHO05D009247 1.2e-101 374.4 453 48.8
TPR.G32461 Trifolium pratense HOM05D007356 ORTHO05D009247 1.4e-100 370.9 480 46.0
Phvul.004G062800 Phaseolus vulgaris HOM05D007356 ORTHO05D009247 1.2e-99 367.9 466 49.1
Aqoxy3G03920 Aquilegia oxysepala HOM05D007356 ORTHO05D009247 1.3e-98 364.4 487 44.6
Aa31LG5G12990 Aethionema arabicum HOM05D007356 ORTHO05D009247 4.8e-98 362.5 470 44.5
VMungo0464G1268 Vigna mungo HOM05D007356 ORTHO05D009247 1.2e-96 357.8 471 46.5
vmacro05573 Vaccinium macrocarpon HOM05D007356 ORTHO05D009247 2.0e-96 357.1 495 45.9
Medtr6g017235 Medicago truncatula HOM05D007356 ORTHO05D009247 7.2e-94 348.6 463 45.1
Nn4g23745 Nelumbo nucifera HOM05D007356 ORTHO05D009247 9.4e-94 348.2 496 44.8
PSO063G7355 Papaver somniferum HOM05D007356 ORTHO05D009247 5.2e-92 342.4 500 43.8
AL3G11850 Arabidopsis lyrata HOM05D007356 ORTHO05D009247 4.4e-91 339.3 480 44.8
Nitab4.5_0008781g0020 Nicotiana tabacum HOM05D007356 ORTHO05D009247 2.4e-89 333.6 466 44.8
Peaxi162Scf01327g00135 Petunia axillaris HOM05D007356 ORTHO05D009247 5.4e-89 332.4 463 45.6
Eucgr.J01469 Eucalyptus grandis HOM05D007356 ORTHO05D009247 1.0e-87 328.2 382 47.4
Lsat_1_v5_gn_4_153101 Lactuca sativa HOM05D007356 ORTHO05D009247 3.8e-87 326.2 471 45.2
Actinidia18124 Actinidia chinensis HOM05D007356 ORTHO05D009247 1.2e-85 321.2 393 50.1
PGSC0003DMG400012678 Solanum tuberosum HOM05D007356 ORTHO05D009247 6.1e-85 318.9 481 41.6
CARHR076490 Cardamine hirsuta HOM05D007356 ORTHO05D009247 8.0e-85 318.5 470 42.3
Sopen02g030430 Solanum pennellii HOM05D007356 ORTHO05D009247 6.8e-84 315.5 482 41.1
Solyc02g085740.4 Solanum lycopersicum HOM05D007356 ORTHO05D009247 1.2e-83 314.7 478 41.2
Oeu030757.2 Olea europaea HOM05D007356 ORTHO05D009247 2.0e-83 313.9 424 45.0
MBI16_g25107_MAGBIO Magnolia biondii HOM05D007356 ORTHO05D009247 3.4e-83 313.2 499 43.1
Nitab4.5_0004118g0090 Nicotiana tabacum HOM05D007356 ORTHO05D009247 7.5e-83 312.0 441 44.4
HanXRQChr14g0438671 Helianthus annuus HOM05D007356 ORTHO05D009247 5.4e-81 305.8 463 44.9
Migut.H00199 Erythranthe guttata HOM05D007356 ORTHO05D009247 7.0e-81 305.4 453 41.5
Hund13734 Selenicereus undatus HOM05D007356 ORTHO05D009247 2.3e-79 300.4 492 40.0
CSS0016710 Camellia sinensis var. sinensis HOM05D007356 ORTHO05D009247 6.6e-79 298.9 401 49.1
Psat1g012920 Pisum sativum HOM05D007356 ORTHO05D009247 1.1e-78 298.1 330 49.7
Ah.16g101940 Amaranthus hybridus HOM05D007356 ORTHO05D009247 1.9e-78 297.4 490 39.8
SGA_v2.0_scaffold33G13428 Striga asiatica HOM05D007356 ORTHO05D009247 3.3e-78 296.6 452 42.7
Cc07_g09030 Coffea canephora HOM05D007356 ORTHO05D009247 2.8e-77 293.5 501 39.3
RcHm_v2.0_Chr2g0163141 Rosa chinensis HOM05D007356 ORTHO05D009247 8.3e-74 282.0 307 51.8
PGR042G1693 Punica granatum HOM05D007356 ORTHO05D009247 7.8e-72 275.4 465 41.7
AUR62014539 Chenopodium quinoa HOM05D007356 ORTHO05D009247 3.3e-70 270.0 461 38.6
Sed0002469 Sechium edule HOM05D007356 ORTHO05D009247 9.5e-70 268.5 294 50.3
FAN09G4466 Fragaria x ananassa HOM05D007356 ORTHO05D009247 4.7e-69 266.2 302 50.3
PSO782G4491 Papaver somniferum HOM05D007356 ORTHO05D009247 6.2e-69 265.8 432 42.6
ECA232G5000 Erigeron canadensis HOM05D007356 ORTHO05D009247 8.9e-68 261.9 333 46.2
EL10Ac2g04607 Beta vulgaris HOM05D007356 ORTHO05D009247 6.4e-66 255.8 593 32.2
CDE08G0776 Ceratophyllum demersum HOM05D007356 ORTHO05D009247 2.8e-61 240.4 481 35.8
DCAR_017218 Daucus carota HOM05D007356 ORTHO05D009247 4.7e-61 239.6 435 38.4
MELO3C023764.2 Cucumis melo HOM05D007356 ORTHO05D009247 2.3e-60 237.3 276 48.9
Ca_26179_v3 Cicer arietinum L. HOM05D007356 ORTHO05D009247 4.0e-60 236.5 278 48.9
CiPaw.03G059600 Carya illinoinensis HOM05D007356 ORTHO05D009247 7.5e-59 232.3 285 48.8
AUR62008964 Chenopodium quinoa HOM05D007356 ORTHO05D009247 6.4e-58 229.2 379 38.0
unitig_60.g25515 Utricularia gibba HOM05D007356 ORTHO05D009247 4.1e-57 226.5 445 35.3
GSVIVG01036444001 Vitis vinifera HOM05D007356 ORTHO05D009247 4.3e-54 216.5 197 55.8
CDE02G0316 Ceratophyllum demersum HOM05D007356 ORTHO05D009247 5.6e-46 189.5 426 34.7
Sc11g0008200 Simmondsia chinensis HOM05D007356 ORTHO05D009247 1.3e-45 188.3 244 44.3
Lj2A447T55 Lonicera japonica HOM05D007356 ORTHO05D009247 6.9e-44 182.6 170 57.1
ATR0681G386 Amborella trichopoda HOM05D007356 ORTHO05D009247 2.7e-40 170.6 548 28.8
AL3G11840 Arabidopsis lyrata HOM05D007356 ORTHO05D009247 2.1e-37 161.0 198 48.5
Aqoxy3G02147 Aquilegia oxysepala HOM05D007356 ORTHO05D009247 6.2e-37 159.5 143 52.4
Os01g0694200 Oryza sativa ssp. japonica HOM05D007356 ORTHO05D009247 1.4e-36 158.3 480 31.2
Sed0015927 Sechium edule HOM05D007356 ORTHO05D009247 1.8e-36 157.9 172 50.6
Glyma.19G045202 Glycine max HOM05D007356 ORTHO05D009247 2.6e-35 154.1 185 49.2
Zm00001eb155990 Zea mays HOM05D007356 ORTHO05D009247 1.7e-34 151.4 485 29.7
Sc11g0008210 Simmondsia chinensis HOM05D007356 ORTHO05D009247 1.9e-25 121.3 150 45.3
Lsat_1_v5_gn_3_87441 Lactuca sativa HOM05D007356 ORTHO05D009247 6.5e-18 96.3 119 43.7
SMO145G0090 Selaginella moellendorffii HOM05D007356 ORTHO05D009247 2.3e-15 87.8 431 23.7
SEGI_12886 Sequoiadendron giganteum HOM05D007356 ORTHO05D009247 6.7e-15 86.3 243 26.7
AUR62035477 Chenopodium quinoa HOM05D000128 ORTHO05D000059 2.8e-13 80.9 85 42.4
Actinidia15867 Actinidia chinensis HOM05D007356 ORTHO05D009247 4.8e-13 80.1 70 58.6
Lj2C447T11 Lonicera japonica HOM05D007356 ORTHO05D009247 4.1e-12 77.0 101 48.5
Pp3c9_14770 Physcomitrium patens HOM05D007356 ORTHO05D009247 7.2e-09 66.2 104 34.6
AagrBONN_evm.TU.Sc2ySwM_344.3211 Anthoceros agrestis HOM05D007356 ORTHO05D009247 7.9e-08 62.8 176 29.0
Pp3c15_5150 Physcomitrium patens HOM05D007356 ORTHO05D009247 1.8e-07 61.6 104 34.6
Mapoly0080s0048 Marchantia polymorpha HOM05D007356 ORTHO05D009247 6.7e-07 59.7 224 26.3
HPP92_009695 Vanilla planifolia HOM05D007356 ORTHO05D009247 7.4e-06 56.2 93 39.8


User provided reference genes

Program Settings