Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 0.0e+00 1282.7 1010 100.0
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 1.2e-197 694.5 954 75.4
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 9.3e-182 641.7 968 69.4
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 3.0e-180 636.7 986 69.0
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 6.6e-180 635.6 986 68.9
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 1.7e-172 610.9 980 65.6
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 1.3e-170 604.7 742 64.3
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 2.8e-170 603.6 926 71.5
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 1.2e-168 598.2 926 71.9
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 1.5e-168 597.8 991 65.0
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 1.3e-167 594.7 979 66.6
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 3.8e-167 593.2 979 66.6
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 1.1e-166 591.7 984 67.7
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 9.3e-166 588.6 983 67.3
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 3.5e-165 586.6 1002 64.7
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 1.0e-164 585.1 978 68.0
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 2.2e-159 567.4 893 68.8
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 2.5e-158 563.9 979 65.8
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 2.1e-157 560.8 980 66.0
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 1.5e-155 554.7 753 61.4
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 3.3e-155 553.5 745 59.6
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 5.7e-155 552.7 780 56.9
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 2.6e-152 543.9 754 58.5
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 3.4e-152 543.5 753 57.9
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 9.3e-150 535.4 747 61.2
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 1.1e-147 528.5 771 55.8
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 1.5e-147 528.1 745 58.9
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 4.3e-147 526.6 970 65.4
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 6.5e-143 512.7 962 65.4
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 1.9e-142 511.1 991 63.7
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 2.5e-142 510.8 966 58.8
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 4.2e-142 510.0 744 57.5
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 2.1e-141 507.7 981 58.2
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 1.8e-140 504.6 817 72.6
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 1.5e-139 501.5 725 55.6
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 8.2e-138 495.7 961 63.5
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 2.4e-137 494.2 972 64.0
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 2.6e-136 490.7 891 68.5
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 5.9e-136 489.6 787 55.1
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 1.0e-132 478.8 973 59.6
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 1.4e-132 478.4 738 54.1
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 8.2e-130 469.2 969 55.7
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 8.2e-130 469.2 743 57.6
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 1.1e-129 468.8 725 56.3
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 1.6e-125 454.9 736 55.3
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 7.0e-121 439.5 755 54.7
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 6.5e-119 433.0 984 61.7
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 7.2e-118 429.5 584 63.4
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 9.4e-118 429.1 748 53.2
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 3.6e-117 427.2 749 54.7
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 3.6e-117 427.2 771 52.7
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 2.6e-115 421.0 748 53.1
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 7.5e-115 419.5 749 53.8
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 7.5e-115 419.5 967 58.5
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 9.8e-115 419.1 750 53.9
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 9.8e-115 419.1 897 58.2
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 1.3e-114 418.7 748 53.2
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 8.3e-114 416.0 735 55.0
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 8.5e-111 406.0 633 58.3
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.9e-110 404.8 718 52.1
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 2.3e-108 397.9 968 58.2
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 2.8e-106 391.0 761 51.1
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 2.7e-104 384.4 820 61.2
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 2.3e-103 381.3 967 55.6
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 1.4e-100 372.1 743 50.3
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 3.0e-100 370.9 961 57.3
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 5.7e-99 366.7 739 50.2
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 5.7e-99 366.7 739 50.2
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 4.9e-98 363.6 987 58.0
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 6.4e-98 363.2 888 61.6
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 1.8e-97 361.7 590 66.1
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 2.3e-95 354.8 726 52.6
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 2.1e-93 348.2 1004 55.2
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 3.6e-93 347.4 748 52.0
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 1.5e-91 342.0 582 65.5
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 7.5e-91 339.7 747 51.8
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 1.3e-90 339.0 829 60.4
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 1.2e-88 332.4 750 52.3
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 4.6e-88 330.5 746 44.6
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 7.1e-81 306.6 671 47.1
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 4.6e-80 303.9 682 32.4
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 3.6e-77 294.3 744 45.6
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 7.3e-70 270.0 831 59.8
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 2.6e-67 261.5 361 44.6
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 3.5e-64 251.1 583 54.5
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 6.4e-58 230.3 606 50.2
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 4.0e-52 211.1 425 49.4
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 3.2e-49 201.4 343 34.7
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 7.9e-48 196.8 568 45.4
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 1.1e-44 186.4 738 43.6
RcHm_v2.0_Chr2g0131261 Rosa chinensis HOM05D006842 ORTHO05D008908 4.0e-44 184.5 173 52.0
MD16G1250300 Malus domestica HOM05D006842 ORTHO05D008908 1.0e-42 179.9 251 45.0
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 3.4e-35 154.8 656 44.8
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 5.9e-35 154.1 241 38.6
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 1.7e-26 125.9 391 65.7
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 6.7e-23 114.0 210 32.4
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 3.3e-22 111.7 194 36.6
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 2.4e-20 105.5 355 67.3
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 2.0e-19 102.4 356 68.5
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 1.3e-18 99.8 355 67.9
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 3.3e-14 85.1 317 72.2
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 2.2e-13 82.4 314 72.9
AUR62039733 Chenopodium quinoa HOM05D006842 ORTHO05D008908 3.7e-13 81.6 106 45.3
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 5.9e-11 74.3 154 30.5
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 5.9e-11 74.3 154 30.5
Thhalv10007086m.g Eutrema salsugineum HOM05D007552 ORTHO05D009397 1.3e-10 73.2 137 33.6
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 1.7e-10 72.8 62 56.5
Medtr3g103990 Medicago truncatula HOM05D006842 ORTHO05D008908 3.8e-10 71.6 101 39.6
Nitab4.5_0003261g0020 Nicotiana tabacum HOM05D006842 ORTHO05D008908 5.5e-09 67.8 53 60.4
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 7.2e-09 67.4 229 24.5
Medtr3g023180 Medicago truncatula HOM05D005973 ORTHO05D007285 9.4e-09 67.0 208 27.4
ECA240G1124 Erigeron canadensis HOM05D005398 ORTHO05D000476 2.1e-08 65.9 248 23.4
C05p15050 Brassica napus HOM05D007552 ORTHO05D009397 6.1e-08 64.3 154 28.6
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 4.0e-07 61.6 120 32.5
MSTRG.27466 Avicennia marina HOM05D007390 ORTHO05D009114 5.2e-07 61.2 107 25.2
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 6.7e-07 60.8 235 25.1
AagrBONN_evm.TU.Sc2ySwM_228.5701 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.8e-07 60.5 105 30.5
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 8.8e-07 60.5 104 29.8
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 8.8e-07 60.5 235 25.1
AagrBONN_evm.TU.Sc2ySwM_362.2053 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.1e-06 60.1 104 29.8
CsaV3_1G014430 Cucumis sativus L. HOM05D000001 ORTHO05D000003 1.1e-06 60.1 357 20.2
PSO675G6037 Papaver somniferum HOM05D010315 ORTHO05D011532 1.5e-06 59.7 243 22.2
HPP92_021332 Vanilla planifolia HOM05D007212 ORTHO05D000003 1.5e-06 59.7 119 31.1
AagrBONN_evm.TU.Sc2ySwM_344.5627__5628 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.0e-06 59.3 120 30.0
Migut.D02115 Erythranthe guttata HOM05D007212 ORTHO05D009094 2.0e-06 59.3 180 25.6
Cc02_g34430 Coffea canephora HOM05D006842 ORTHO05D020317 2.6e-06 58.9 87 31.0
Pp3c24_8560 Physcomitrium patens HOM05D000001 ORTHO05D000003 2.6e-06 58.9 357 21.3
AagrBONN_evm.TU.Sc2ySwM_199.28 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.3e-06 58.5 120 30.0
AagrBONN_evm.TU.Sc2ySwM_337.1 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.3e-06 58.5 104 29.8
AagrBONN_evm.TU.Sc2ySwM_344.1460 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.3e-06 58.5 104 29.8
AagrBONN_evm.TU.Sc2ySwM_344.1500 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.3e-06 58.5 104 29.8
AagrBONN_evm.TU.Sc2ySwM_228.2344 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.4e-06 58.2 237 21.1
SalBow4G3102 Salvia bowleyana HOM05D007390 ORTHO05D009114 4.4e-06 58.2 124 25.8
AagrBONN_evm.TU.Sc2ySwM_344.5626 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.7e-06 57.8 117 30.8
CiPaw.14G071200 Carya illinoinensis HOM05D007212 ORTHO05D009094 5.7e-06 57.8 161 29.2
DCAR_003849 Daucus carota HOM05D000855 ORTHO05D008530 5.7e-06 57.8 93 35.5
DCAR_009287 Daucus carota HOM05D000855 ORTHO05D008530 5.7e-06 57.8 93 35.5
Eucgr.K03209 Eucalyptus grandis HOM05D000855 ORTHO05D008530 5.7e-06 57.8 205 27.8
MD16G1250500 Malus domestica HOM05D006842 ORTHO05D008908 5.7e-06 57.8 54 53.7
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 5.7e-06 57.8 56 50.0
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 5.7e-06 57.8 229 23.6
AagrBONN_evm.TU.Sc2ySwM_340.725 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.5e-06 57.4 120 30.0
Migut.G01107 Erythranthe guttata HOM05D007212 ORTHO05D009094 7.5e-06 57.4 179 25.1
AagrBONN_evm.TU.Sc2ySwM_362.71 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.7e-06 57.0 121 29.8
BcaC05g25539 Brassica carinata HOM05D007552 ORTHO05D009397 9.7e-06 57.0 123 30.1
BolC5t30220H Brassica oleracea HOM05D007552 ORTHO05D009397 9.7e-06 57.0 123 30.1
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 9.7e-06 57.0 180 23.3


User provided reference genes

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