Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.522 Acer truncatum HOM05D003273 ORTHO05D026244 7.1e-62 240.4 116 100.0
Atru.chr9.1901 Acer truncatum HOM05D003273 ORTHO05D004023 4.7e-37 157.9 93 83.9
Atru.chr5.2636 Acer truncatum HOM05D003273 ORTHO05D026244 5.9e-24 114.4 63 87.3
Ciclev10020636m.g Citrus clementina HOM05D003273 ORTHO05D004023 2.5e-22 109.0 93 63.4
Atru.chr11.1336 Acer truncatum HOM05D003273 ORTHO05D004023 4.7e-21 104.8 66 75.8
Atru.chr11.597 Acer truncatum HOM05D003273 ORTHO05D026244 1.5e-19 99.8 64 76.6
Gohir.D12G240600 Gossypium hirsutum HOM05D003273 ORTHO05D004023 1.3e-18 96.7 92 57.6
Gorai.008G257700 Gossypium raimondii HOM05D003273 ORTHO05D004023 1.3e-18 96.7 92 57.6
Thecc.03G222300 Theobroma cacao HOM05D003273 ORTHO05D004023 2.2e-18 95.9 92 56.5
Gohir.A12G239400 Gossypium hirsutum HOM05D003273 ORTHO05D004023 4.8e-18 94.7 92 56.5
Duzib205G2016 Durio zibethinus HOM05D003273 ORTHO05D004023 6.3e-18 94.4 92 56.5
COL.COLO4_10786 Corchorus olitorius HOM05D003273 ORTHO05D004023 3.1e-17 92.0 92 56.5
Lj8A201T85 Lonicera japonica HOM05D003273 ORTHO05D004023 4.1e-17 91.7 93 53.8
Duzib084G1283 Durio zibethinus HOM05D003273 ORTHO05D004023 7.0e-17 90.9 91 56.0
Potri.003G145900 Populus trichocarpa HOM05D003273 ORTHO05D004023 9.1e-17 90.5 95 51.6
Manes.02G003700 Manihot esculenta HOM05D003273 ORTHO05D004023 2.0e-16 89.4 94 55.3
Cfa011934 Carpinus fangiana HOM05D003273 ORTHO05D004023 1.3e-15 86.7 93 51.6
QL02p029218 Quercus lobata HOM05D003273 ORTHO05D004023 1.3e-15 86.7 93 52.7
TAR374G0902 Trochodendron aralioides HOM05D003273 ORTHO05D004023 1.7e-15 86.3 94 50.0
Gohir.D09G183600 Gossypium hirsutum HOM05D003273 ORTHO05D004023 2.2e-15 85.9 92 54.3
Gorai.006G206000 Gossypium raimondii HOM05D003273 ORTHO05D004023 2.2e-15 85.9 92 54.3
TWI60G0246 Tripterygium wilfordii HOM05D003273 ORTHO05D004023 2.2e-15 85.9 65 64.6
Haze_09162 Corylus avellana HOM05D003273 ORTHO05D004023 5.0e-15 84.7 93 52.7
Dinv12010 Davidia involucrata HOM05D003273 ORTHO05D004023 6.5e-15 84.3 92 52.2
Nn3g18892 Nelumbo nucifera HOM05D003273 ORTHO05D004023 8.5e-15 84.0 93 49.5
PGR031G1116 Punica granatum HOM05D003273 ORTHO05D004023 1.1e-14 83.6 79 59.5
Sabra03G0106000 Salix brachista HOM05D003273 ORTHO05D004023 1.1e-14 83.6 95 50.5
AUR62012264 Chenopodium quinoa HOM05D003273 ORTHO05D004023 1.9e-14 82.8 51 76.5
Haze_16435 Corylus avellana HOM05D003273 ORTHO05D004023 1.9e-14 82.8 93 50.5
Dinv19522 Davidia involucrata HOM05D003273 ORTHO05D004023 1.9e-14 82.8 93 50.5
Lj3g0027552 Lotus japonicus HOM05D003273 ORTHO05D004023 1.9e-14 82.8 58 65.5
Lalb_Chr12g0209471 Lupinus albus HOM05D003273 ORTHO05D004023 2.5e-14 82.4 80 56.2
Hund15921 Selenicereus undatus HOM05D003273 ORTHO05D004023 2.5e-14 82.4 86 52.3
THA.LOC104809309 Tarenaya hassleriana HOM05D003273 ORTHO05D004023 3.2e-14 82.0 93 53.8
AUR62022899 Chenopodium quinoa HOM05D003273 ORTHO05D004023 4.2e-14 81.6 51 74.5
EL10Ac2g04846 Beta vulgaris HOM05D003273 ORTHO05D004023 1.2e-13 80.1 51 72.5
VMungo0331G1540 Vigna mungo HOM05D003273 ORTHO05D004023 1.2e-13 80.1 51 70.6
Sc01g0010600 Simmondsia chinensis HOM05D003273 ORTHO05D004023 1.6e-13 79.7 65 58.5
Aqoxy1G01329 Aquilegia oxysepala HOM05D003273 ORTHO05D004023 2.1e-13 79.3 94 47.9
Ah.10g036600 Amaranthus hybridus HOM05D003273 ORTHO05D004023 2.7e-13 79.0 95 51.6
Glyma.03G068700 Glycine max HOM05D003273 ORTHO05D004023 3.6e-13 78.6 86 51.2
Sp7g00160 Schrenkiella parvula HOM05D003273 ORTHO05D004023 3.6e-13 78.6 78 56.4
Sed0020813 Sechium edule HOM05D003273 ORTHO05D004023 3.6e-13 78.6 82 53.7
Nitab4.5_0007932g0010 Nicotiana tabacum HOM05D003273 ORTHO05D004023 4.7e-13 78.2 92 56.5
TAR629G1687 Trochodendron aralioides HOM05D003273 ORTHO05D004023 4.7e-13 78.2 94 45.7
Gohir.A09G188700 Gossypium hirsutum HOM05D003273 ORTHO05D004023 6.1e-13 77.8 92 50.0
TWI32G0870 Tripterygium wilfordii HOM05D003273 ORTHO05D004023 6.1e-13 77.8 65 61.5
Actinidia27289 Actinidia chinensis HOM05D003273 ORTHO05D004023 1.8e-12 76.3 93 47.3
CsaV3_5G001740 Cucumis sativus L. HOM05D003273 ORTHO05D004023 1.8e-12 76.3 92 54.3
Nitab4.5_0000167g0260 Nicotiana tabacum HOM05D003273 ORTHO05D004023 1.8e-12 76.3 90 56.7
Cpa.g.sc175.17 Carica papaya HOM05D003273 ORTHO05D026244 2.3e-12 75.9 59 62.7
Thhalv10027801m.g Eutrema salsugineum HOM05D003273 ORTHO05D004023 2.3e-12 75.9 73 54.8
Lsat_1_v5_gn_3_13701 Lactuca sativa HOM05D003273 ORTHO05D004023 3.0e-12 75.5 71 52.1
Rhsim07G0078300 Rhododendron simsii HOM05D003273 ORTHO05D004023 3.0e-12 75.5 93 49.5
Hma1.2p1_0440F.1_g153770 Hydrangea macrophylla HOM05D003273 ORTHO05D004023 4.0e-12 75.1 76 50.0
Oeu022038.1 Olea europaea HOM05D003273 ORTHO05D004023 4.0e-12 75.1 64 60.9
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 5.2e-12 74.7 72 55.6
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 5.2e-12 74.7 72 55.6
Medtr4g021175 Medicago truncatula HOM05D003273 ORTHO05D004023 5.2e-12 74.7 88 50.0
CARHR212590 Cardamine hirsuta HOM05D003273 ORTHO05D004023 6.8e-12 74.3 80 55.0
CiPaw.11G113500 Carya illinoinensis HOM05D003273 ORTHO05D004023 6.8e-12 74.3 44 77.3
MELO3C005779.2 Cucumis melo HOM05D003273 ORTHO05D004023 8.8e-12 73.9 62 59.7
Phvul.010G015700 Phaseolus vulgaris HOM05D003273 ORTHO05D004023 8.8e-12 73.9 80 51.2
RcHm_v2.0_Chr7g0186791 Rosa chinensis HOM05D003273 ORTHO05D004023 8.8e-12 73.9 42 81.0
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 1.2e-11 73.6 80 52.5
BolC4t26521H Brassica oleracea HOM05D003273 ORTHO05D004023 1.2e-11 73.6 80 52.5
DCAR_006537 Daucus carota HOM05D003273 ORTHO05D004023 1.2e-11 73.6 65 55.4
Glyma.01G100900 Glycine max HOM05D003273 ORTHO05D004023 1.2e-11 73.6 90 46.7
Actinidia22200 Actinidia chinensis HOM05D003273 ORTHO05D004023 1.5e-11 73.2 93 48.4
arahy.Tifrunner.gnm1.ann1.4I2CMT Arachis hypogaea HOM05D003273 ORTHO05D004023 1.5e-11 73.2 91 44.0
BcaC02g08900 Brassica carinata HOM05D003273 ORTHO05D004023 1.5e-11 73.2 68 55.9
BolC6t37217H Brassica oleracea HOM05D003273 ORTHO05D004023 1.5e-11 73.2 67 58.2
Peaxi162Scf00391g00526 Petunia axillaris HOM05D003273 ORTHO05D004023 1.5e-11 73.2 90 50.0
Aa31LG9G220 Aethionema arabicum HOM05D003273 ORTHO05D004023 2.0e-11 72.8 94 48.9
BcaB06g27684 Brassica carinata HOM05D003273 ORTHO05D004023 2.0e-11 72.8 87 51.7
CiPaw.12G078300 Carya illinoinensis HOM05D003273 ORTHO05D004023 2.0e-11 72.8 44 72.7
Hma1.2p1_0212F.1_g090240 Hydrangea macrophylla HOM05D003273 ORTHO05D004023 2.0e-11 72.8 90 47.8
vmacro13853 Vaccinium macrocarpon HOM05D003273 ORTHO05D004023 2.0e-11 72.8 93 50.5
arahy.Tifrunner.gnm1.ann1.XN2XCV Arachis hypogaea HOM05D003273 ORTHO05D004023 2.6e-11 72.4 91 48.4
AL7G47250 Arabidopsis lyrata HOM05D003273 ORTHO05D004023 3.4e-11 72.0 73 53.4
BcaC08g44572 Brassica carinata HOM05D003273 ORTHO05D004023 3.4e-11 72.0 92 47.8
MD06G1117500 Malus domestica HOM05D003273 ORTHO05D004023 3.4e-11 72.0 40 82.5
Sed0005002 Sechium edule HOM05D003273 ORTHO05D004023 3.4e-11 72.0 53 69.8
TPR.G5574 Trifolium pratense HOM05D003273 ORTHO05D004023 3.4e-11 72.0 86 50.0
AT5G41970 Arabidopsis thaliana HOM05D003273 ORTHO05D004023 4.4e-11 71.6 73 53.4
Pp3c17_23840 Physcomitrium patens HOM05D003273 ORTHO05D004023 4.4e-11 71.6 79 50.6
HPP92_003272 Vanilla planifolia HOM05D003273 ORTHO05D004023 4.4e-11 71.6 80 48.8
MD14G1124700 Malus domestica HOM05D003273 ORTHO05D004023 5.7e-11 71.2 44 75.0
GSVIVG01019639001 Vitis vinifera HOM05D003273 ORTHO05D004023 5.7e-11 71.2 57 64.9
Actinidia18673 Actinidia chinensis HOM05D003194 ORTHO05D003790 7.5e-11 70.9 47 70.2
Ca_20068_v3 Cicer arietinum L. HOM05D003273 ORTHO05D004023 7.5e-11 70.9 50 66.0
C06p20380 Brassica napus HOM05D003273 ORTHO05D004023 9.8e-11 70.5 96 45.8
CSS0027977 Camellia sinensis var. sinensis HOM05D003273 ORTHO05D004023 9.8e-11 70.5 72 51.4
CANSAT21G0905 Cannabis sativa HOM05D003273 ORTHO05D004023 9.8e-11 70.5 55 67.3
Mapoly0001s0278 Marchantia polymorpha HOM05D003273 ORTHO05D004023 9.8e-11 70.5 82 47.6
Prupe.5G128600 Prunus persica HOM05D003273 ORTHO05D004023 9.8e-11 70.5 40 80.0
ClCG01G001580 Citrullus lanatus HOM05D003273 ORTHO05D004023 1.3e-10 70.1 51 68.6
Thecc.03G204800 Theobroma cacao HOM05D003273 ORTHO05D004023 1.3e-10 70.1 96 47.9
FvH4_5g11020 Fragaria vesca HOM05D003273 ORTHO05D004023 1.7e-10 69.7 42 76.2
FAN08G0255 Fragaria x ananassa HOM05D003273 ORTHO05D004023 1.7e-10 69.7 42 76.2
FAN13G0487 Fragaria x ananassa HOM05D003273 ORTHO05D004023 1.7e-10 69.7 42 76.2
FAN18G0547 Fragaria x ananassa HOM05D003273 ORTHO05D004023 1.7e-10 69.7 42 76.2
MBI12_g30968_MAGBIO Magnolia biondii HOM05D003273 ORTHO05D004023 1.7e-10 69.7 42 73.8
Sopen11g011040 Solanum pennellii HOM05D003273 ORTHO05D004023 1.7e-10 69.7 90 47.8
CDE12G0336 Ceratophyllum demersum HOM05D003273 ORTHO05D004023 2.2e-10 69.3 50 66.0
Eucgr.D01687 Eucalyptus grandis HOM05D003273 ORTHO05D004023 2.2e-10 69.3 69 53.6
HanXRQChr06g0166851 Helianthus annuus HOM05D003273 ORTHO05D004023 2.8e-10 68.9 71 52.1
PSO384G4673 Papaver somniferum HOM05D003273 ORTHO05D004023 2.8e-10 68.9 94 42.6
Psat7g239560 Pisum sativum HOM05D003273 ORTHO05D004023 2.8e-10 68.9 64 56.2
MSTRG.12197 Avicennia marina HOM05D003273 ORTHO05D004023 3.7e-10 68.6 56 64.3
BraA07t29790Z Brassica rapa HOM05D003273 ORTHO05D004023 3.7e-10 68.6 71 52.1
Carub.0007s3341 Capsella rubella HOM05D003273 ORTHO05D004023 4.8e-10 68.2 64 56.2
CAN.G544.1 Capsicum annuum HOM05D003273 ORTHO05D004023 4.8e-10 68.2 86 47.7
PGSC0003DMG400009282 Solanum tuberosum HOM05D003273 ORTHO05D004023 4.8e-10 68.2 55 60.0
Potri.015G007900 Populus trichocarpa HOM05D003273 ORTHO05D004023 6.3e-10 67.8 56 58.9
A07p21030 Brassica napus HOM05D003273 ORTHO05D004023 8.3e-10 67.4 93 43.0
Migut.A01094 Erythranthe guttata HOM05D003273 ORTHO05D004023 8.3e-10 67.4 94 45.7
Pp3c14_23100 Physcomitrium patens HOM05D003273 ORTHO05D004023 8.3e-10 67.4 76 47.4
SGA_v2.0_scaffold36G14277 Striga asiatica HOM05D003273 ORTHO05D004023 8.3e-10 67.4 61 57.4
ATR0620G033 Amborella trichopoda HOM05D003273 ORTHO05D004023 1.1e-09 67.0 80 48.8
SalBow7G1537 Salvia bowleyana HOM05D003273 ORTHO05D004023 1.1e-09 67.0 41 75.6
COL.COLO4_16825 Corchorus olitorius HOM05D003273 ORTHO05D004023 1.4e-09 66.6 67 55.2
Eucgr.D01691 Eucalyptus grandis HOM05D003273 ORTHO05D004023 1.4e-09 66.6 42 73.8
HanXRQChr17g0534771 Helianthus annuus HOM05D003273 ORTHO05D004023 1.4e-09 66.6 64 54.7
Cc08_g16670 Coffea canephora HOM05D003273 ORTHO05D004023 1.8e-09 66.2 64 57.8
PSO135G0859 Papaver somniferum HOM05D003273 ORTHO05D004023 1.8e-09 66.2 94 41.5
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 2.4e-09 65.9 41 73.2
QL09p007601 Quercus lobata HOM05D003273 ORTHO05D004023 2.4e-09 65.9 70 48.6
SGA_v2.0_scaffold104G30267 Striga asiatica HOM05D003273 ORTHO05D004023 2.4e-09 65.9 41 73.2
Duzib084G1122 Durio zibethinus HOM05D003273 ORTHO05D004023 4.1e-09 65.1 39 76.9
HanXRQChr06g0175641 Helianthus annuus HOM05D003273 ORTHO05D004023 4.1e-09 65.1 51 64.7
Peaxi162Scf00074g00351 Petunia axillaris HOM05D003273 ORTHO05D004023 4.1e-09 65.1 58 56.9
TWI39G0427 Tripterygium wilfordii HOM05D003273 ORTHO05D004023 4.1e-09 65.1 40 75.0
PGR142G1037 Punica granatum HOM05D003273 ORTHO05D004023 5.4e-09 64.7 60 56.7
Nitab4.5_0000908g0040 Nicotiana tabacum HOM05D003273 ORTHO05D004023 7.0e-09 64.3 56 58.9
Cpa.g.sc3.124 Carica papaya HOM05D003273 ORTHO05D004023 9.1e-09 63.9 40 70.0
Lalb_Chr23g0271731 Lupinus albus HOM05D003273 ORTHO05D004023 9.1e-09 63.9 60 53.3
MSTRG.13718 Avicennia marina HOM05D003273 ORTHO05D004023 1.2e-08 63.5 57 57.9
CSS0038608 Camellia sinensis var. sinensis HOM05D003273 ORTHO05D004023 1.2e-08 63.5 42 66.7
EL10Ac3g05238 Beta vulgaris HOM05D003273 ORTHO05D004023 1.6e-08 63.2 60 51.7
Sabra15G0006000 Salix brachista HOM05D003273 ORTHO05D004023 2.0e-08 62.8 56 55.4
SMO348G0098 Selaginella moellendorffii HOM05D003273 ORTHO05D004023 2.0e-08 62.8 38 71.1
unitig_27.g25045 Utricularia gibba HOM05D003273 ORTHO05D004023 2.0e-08 62.8 80 45.0
Carub.0005s1556 Capsella rubella HOM05D003273 ORTHO05D004023 2.7e-08 62.4 80 45.0
Aa31LG4G17880 Aethionema arabicum HOM05D003273 ORTHO05D004023 3.5e-08 62.0 51 58.8
AagrBONN_evm.TU.Sc2ySwM_344.4491 Anthoceros agrestis HOM05D003273 ORTHO05D004023 3.5e-08 62.0 82 45.1
CBR_g22390 Chara braunii HOM05D003273 ORTHO05D004023 3.5e-08 62.0 40 60.0
CARHR158260 Cardamine hirsuta HOM05D003273 ORTHO05D004023 4.5e-08 61.6 40 65.0
Manes.01G038033 Manihot esculenta HOM05D003273 ORTHO05D004023 4.5e-08 61.6 40 67.5
Thhalv10010489m.g Eutrema salsugineum HOM05D003273 ORTHO05D004023 7.7e-08 60.8 51 60.8
BcaC01g02402 Brassica carinata HOM05D003273 ORTHO05D004023 1.0e-07 60.5 40 65.0
A06p28150 Brassica napus HOM05D003273 ORTHO05D004023 1.0e-07 60.5 40 65.0
C03p65670 Brassica napus HOM05D003273 ORTHO05D004023 1.0e-07 60.5 40 65.0
BolC3t18820H Brassica oleracea HOM05D003273 ORTHO05D004023 1.0e-07 60.5 40 65.0
BraA06t25759Z Brassica rapa HOM05D003273 ORTHO05D004023 1.0e-07 60.5 40 65.0
AUR62035570 Chenopodium quinoa HOM05D003273 ORTHO05D004023 1.3e-07 60.1 64 53.1
Psat5g074640 Pisum sativum HOM05D003273 ORTHO05D004023 1.3e-07 60.1 56 55.4
Rhsim09G0207800 Rhododendron simsii HOM05D003273 ORTHO05D004023 1.3e-07 60.1 63 50.8
Lsat_1_v5_gn_8_5581 Lactuca sativa HOM05D003273 ORTHO05D004023 1.7e-07 59.7 71 49.3
vmacro10143 Vaccinium macrocarpon HOM05D003273 ORTHO05D004023 1.7e-07 59.7 92 40.2
BcaB02g09584 Brassica carinata HOM05D003273 ORTHO05D004023 2.3e-07 59.3 40 65.0
Medtr3g092050 Medicago truncatula HOM05D003273 ORTHO05D004023 2.3e-07 59.3 64 50.0
Os02g0686600 Oryza sativa ssp. japonica HOM05D003273 ORTHO05D004023 2.3e-07 59.3 40 60.0
AT3G49320 Arabidopsis thaliana HOM05D003273 ORTHO05D004023 2.9e-07 58.9 40 62.5
AUR62006057 Chenopodium quinoa HOM05D003273 ORTHO05D004023 2.9e-07 58.9 88 40.9
THA.LOC104814942 Tarenaya hassleriana HOM05D003273 ORTHO05D004023 2.9e-07 58.9 40 67.5
Phvul.009G048500 Phaseolus vulgaris HOM05D003273 ORTHO05D004023 3.8e-07 58.5 42 66.7
Sp5g12750 Schrenkiella parvula HOM05D003273 ORTHO05D004023 3.8e-07 58.5 40 62.5
Hund21023 Selenicereus undatus HOM05D003273 ORTHO05D004023 3.8e-07 58.5 41 56.1
VMungo1309G0452 Vigna mungo HOM05D003273 ORTHO05D004023 3.8e-07 58.5 42 66.7
Ah.07g205170 Amaranthus hybridus HOM05D003273 ORTHO05D004023 5.0e-07 58.2 40 62.5
AL5G29070 Arabidopsis lyrata HOM05D003273 ORTHO05D004023 6.6e-07 57.8 40 60.0
SalBow7G1119 Salvia bowleyana HOM05D000088 ORTHO05D001217 8.6e-07 57.4 40 67.5
TPR.G33629 Trifolium pratense HOM05D003273 ORTHO05D004023 1.5e-06 56.6 51 56.9
arahy.Tifrunner.gnm1.ann1.9WJ8JE Arachis hypogaea HOM05D003273 ORTHO05D004023 1.9e-06 56.2 40 62.5
arahy.Tifrunner.gnm1.ann1.W6K2BP Arachis hypogaea HOM05D003273 ORTHO05D004023 1.9e-06 56.2 40 62.5
Peaxi162Scf00062g00069 Petunia axillaris HOM05D000151 ORTHO05D000074 1.9e-06 56.2 70 44.3
Peaxi162Scf00075g00020 Petunia axillaris HOM05D003273 ORTHO05D004023 1.9e-06 56.2 34 70.6
SalBow4G0738 Salvia bowleyana HOM05D003273 ORTHO05D004023 1.9e-06 56.2 65 50.8
Glyma.04G232300 Glycine max HOM05D003273 ORTHO05D004023 2.5e-06 55.8 42 64.3
Ca_16738_v3 Cicer arietinum L. HOM05D003273 ORTHO05D004023 3.3e-06 55.5 52 50.0
CANSAT21G0938 Cannabis sativa HOM05D003273 ORTHO05D004023 5.5e-06 54.7 38 60.5


User provided reference genes

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