Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.433 Acer truncatum HOM05D005194 ORTHO05D015208 1.3e-120 436.4 214 100.0
Atru.chr4.254 Acer truncatum HOM05D000045 ORTHO05D003357 4.0e-26 122.5 57 94.7
Atru.chr13.1929 Acer truncatum HOM05D000045 ORTHO05D000067 8.1e-19 98.2 136 41.9
Atru.chr8.2 Acer truncatum HOM05D000045 ORTHO05D010597 8.1e-19 98.2 79 59.5
Atru.chr4.298 Acer truncatum HOM05D000045 ORTHO05D000067 3.1e-18 96.3 91 54.9
Atru.chr3.1746 Acer truncatum HOM05D000045 ORTHO05D000067 1.2e-17 94.4 91 53.8
Atru.chr12.1212 Acer truncatum HOM05D000045 ORTHO05D000067 2.3e-13 80.1 64 54.7
Atru.chr1.1740 Acer truncatum HOM05D000045 ORTHO05D012126 7.3e-12 75.1 79 51.9
CANSAT78G1377 Cannabis sativa HOM05D000045 ORTHO05D000611 2.8e-11 73.2 60 55.0
Rhsim01G0208000 Rhododendron simsii HOM05D000045 ORTHO05D000067 6.2e-11 72.0 95 43.2
CANSAT35G1196 Cannabis sativa HOM05D000045 ORTHO05D000067 1.8e-10 70.5 84 42.9
CANSAT80G2162 Cannabis sativa HOM05D000045 ORTHO05D012126 1.8e-10 70.5 83 43.4
COL.COLO4_18552 Corchorus olitorius HOM05D000045 ORTHO05D000611 2.0e-09 67.0 127 34.6
COL.COLO4_18553 Corchorus olitorius HOM05D000045 ORTHO05D000067 2.0e-09 67.0 127 34.6
Atru.chr4.216 Acer truncatum HOM05D000045 ORTHO05D000067 3.4e-09 66.2 33 87.9
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 3.4e-09 66.2 62 45.2
Atru.chr7.367 Acer truncatum HOM05D000045 ORTHO05D012261 4.4e-09 65.9 67 46.3
RcHm_v2.0_Chr6g0246161 Rosa chinensis HOM05D000045 ORTHO05D011574 9.9e-09 64.7 61 49.2
CANSAT25G3790 Cannabis sativa HOM05D000045 ORTHO05D000067 1.3e-08 64.3 61 44.3
RcHm_v2.0_Chr5g0042361 Rosa chinensis HOM05D015025 ORTHO05D015208 1.3e-08 64.3 61 47.5
Ciclev10010226m.g Citrus clementina HOM05D000045 ORTHO05D000067 1.7e-08 63.9 61 37.7
Lj5g0006079 Lotus japonicus HOM05D000045 ORTHO05D003357 1.7e-08 63.9 120 29.2
FvH4_6g34920 Fragaria vesca HOM05D000045 ORTHO05D015658 2.9e-08 63.2 80 43.8
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 2.9e-08 63.2 95 36.8
FAN14G4327 Fragaria x ananassa HOM05D000045 ORTHO05D015658 4.9e-08 62.4 66 47.0
FvH4_7g03431 Fragaria vesca HOM05D000045 ORTHO05D011574 6.4e-08 62.0 67 43.3
Manes.06G144900 Manihot esculenta HOM05D000045 ORTHO05D000067 6.4e-08 62.0 55 54.5
Potri.015G139300 Populus trichocarpa HOM05D000045 ORTHO05D000067 6.4e-08 62.0 55 56.4
Prupe.7G064500 Prunus persica HOM05D000045 ORTHO05D012126 6.4e-08 62.0 64 45.3
FAN12G1638 Fragaria x ananassa HOM05D015025 ORTHO05D015208 8.4e-08 61.6 69 39.1
QL04p038516 Quercus lobata HOM05D000045 ORTHO05D000611 8.4e-08 61.6 69 36.2
Lj3g0010458 Lotus japonicus HOM05D009753 ORTHO05D010597 1.1e-07 61.2 82 37.8
Rhsim02G0142300 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.1e-07 61.2 79 36.7
Rhsim05G0138000 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.1e-07 61.2 64 45.3
Rhsim11G0186200 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.1e-07 61.2 79 36.7
GSVIVG01032951001 Vitis vinifera HOM05D000045 ORTHO05D000611 1.1e-07 61.2 75 46.7
FAN01G0822 Fragaria x ananassa HOM05D026390 ORTHO05D012126 1.4e-07 60.8 111 34.2
Rhsim02G0102200 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.4e-07 60.8 79 36.7
Rhsim09G0031000 Rhododendron simsii HOM05D000045 ORTHO05D012126 1.4e-07 60.8 64 45.3
Lj3g0025584 Lotus japonicus HOM05D009753 ORTHO05D003357 1.9e-07 60.5 82 36.6
CANSAT64G2897 Cannabis sativa HOM05D000045 ORTHO05D000067 2.4e-07 60.1 104 35.6
Cfa008288 Carpinus fangiana HOM05D000045 ORTHO05D000067 2.4e-07 60.1 55 52.7
Dinv28471 Davidia involucrata HOM05D000045 ORTHO05D000067 2.4e-07 60.1 69 44.9
Lj1g0009739 Lotus japonicus HOM05D009753 ORTHO05D010597 2.4e-07 60.1 82 36.6
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 2.4e-07 60.1 72 38.9
Rhsim10G0168700 Rhododendron simsii HOM05D000045 ORTHO05D001086 2.4e-07 60.1 64 45.3
Cpa.g.sc107.20 Carica papaya HOM05D000045 ORTHO05D000067 3.2e-07 59.7 55 52.7
CiPaw.03G103400 Carya illinoinensis HOM05D000045 ORTHO05D000067 3.2e-07 59.7 55 52.7
Ciclev10023561m.g Citrus clementina HOM05D000045 ORTHO05D000067 3.2e-07 59.7 112 31.2
Lj4g0026339 Lotus japonicus HOM05D009753 ORTHO05D010597 3.2e-07 59.7 82 36.6
Lj5g0000269 Lotus japonicus HOM05D009753 ORTHO05D010597 3.2e-07 59.7 82 36.6
Lj6g0002047 Lotus japonicus HOM05D009753 ORTHO05D010597 3.2e-07 59.7 82 36.6
Rhsim01G0153900 Rhododendron simsii HOM05D000045 ORTHO05D000067 3.2e-07 59.7 80 38.8
Rhsim03G0160300 Rhododendron simsii HOM05D000045 ORTHO05D000067 3.2e-07 59.7 72 38.9
Rhsim06G0101500 Rhododendron simsii HOM05D000045 ORTHO05D000067 3.2e-07 59.7 72 38.9
RhsimUnG0161100 Rhododendron simsii HOM05D000045 ORTHO05D000067 3.2e-07 59.7 76 38.2
RhsimUnG0178400 Rhododendron simsii HOM05D000045 ORTHO05D000067 3.2e-07 59.7 76 38.2
RcHm_v2.0_Chr2g0118661 Rosa chinensis HOM05D018304 ORTHO05D022576 3.2e-07 59.7 66 43.9
Glyma.10G238500 Glycine max HOM05D000045 ORTHO05D000067 4.2e-07 59.3 55 50.9
Rhsim01G0090200 Rhododendron simsii HOM05D000045 ORTHO05D000067 4.2e-07 59.3 72 38.9
Rhsim03G0019600 Rhododendron simsii HOM05D000045 ORTHO05D000067 4.2e-07 59.3 51 49.0
Rhsim04G0161500 Rhododendron simsii HOM05D000045 ORTHO05D000067 4.2e-07 59.3 76 38.2
TWI14G0041 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 4.2e-07 59.3 59 42.4
TWI34G0270 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 4.2e-07 59.3 59 42.4
TWI34G0717 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 4.2e-07 59.3 59 42.4
TWI38G0833 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 4.2e-07 59.3 59 42.4
arahy.Tifrunner.gnm1.ann1.C3B8AU Arachis hypogaea HOM05D005194 ORTHO05D003357 5.4e-07 58.9 125 32.0
arahy.Tifrunner.gnm1.ann1.CU1977 Arachis hypogaea HOM05D005194 ORTHO05D003357 5.4e-07 58.9 125 32.0
arahy.Tifrunner.gnm1.ann1.FPY4AL Arachis hypogaea HOM05D005194 ORTHO05D003357 5.4e-07 58.9 118 31.4
arahy.Tifrunner.gnm1.ann1.QF9QDK Arachis hypogaea HOM05D005194 ORTHO05D003357 5.4e-07 58.9 132 31.1
Phvul.007G067000 Phaseolus vulgaris HOM05D000045 ORTHO05D000067 5.4e-07 58.9 55 50.9
Rhsim09G0196900 Rhododendron simsii HOM05D000045 ORTHO05D000067 5.4e-07 58.9 120 37.5
FAN26G2579 Fragaria x ananassa HOM05D012208 ORTHO05D012261 7.1e-07 58.5 81 37.0
Lj1g0001785 Lotus japonicus HOM05D000045 ORTHO05D007788 7.1e-07 58.5 67 38.8
Lj3g0015805 Lotus japonicus HOM05D005194 ORTHO05D003357 7.1e-07 58.5 67 38.8
Lj3g0023941 Lotus japonicus HOM05D005194 ORTHO05D003357 7.1e-07 58.5 67 38.8
Lj4g0015383 Lotus japonicus HOM05D000045 ORTHO05D000067 7.1e-07 58.5 67 38.8
RcHm_v2.0_Chr1g0343281 Rosa chinensis HOM05D019226 ORTHO05D012126 7.1e-07 58.5 79 45.6
TPR.G17425 Trifolium pratense HOM05D000045 ORTHO05D000067 7.1e-07 58.5 115 34.8
FvH4_4g10122 Fragaria vesca HOM05D000045 ORTHO05D012261 9.3e-07 58.2 71 38.0
FvH4_4g28751 Fragaria vesca HOM05D000045 ORTHO05D003357 9.3e-07 58.2 79 35.4
FvH4_6g00151 Fragaria vesca HOM05D000045 ORTHO05D000611 9.3e-07 58.2 98 38.8
arahy.Tifrunner.gnm1.ann1.LFPY9D Arachis hypogaea HOM05D005194 ORTHO05D003357 1.2e-06 57.8 149 30.9
arahy.Tifrunner.gnm1.ann1.P0DZ60 Arachis hypogaea HOM05D005194 ORTHO05D003357 1.2e-06 57.8 125 32.0
arahy.Tifrunner.gnm1.ann1.QN1KDE Arachis hypogaea HOM05D005194 ORTHO05D003357 1.2e-06 57.8 92 35.9
arahy.Tifrunner.gnm1.ann1.UU22QK Arachis hypogaea HOM05D005194 ORTHO05D003357 1.2e-06 57.8 125 31.2
CSS0016444 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 1.2e-06 57.8 87 41.4
CSS0017326 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 1.2e-06 57.8 87 41.4
CANSAT11G1698 Cannabis sativa HOM05D000045 ORTHO05D000067 1.2e-06 57.8 61 41.0
Ciclev10018794m.g Citrus clementina HOM05D000045 ORTHO05D000067 1.2e-06 57.8 118 33.9
Duzib205G0811 Durio zibethinus HOM05D000045 ORTHO05D000067 1.2e-06 57.8 55 50.9
Lj1g0002394 Lotus japonicus HOM05D000045 ORTHO05D000067 1.2e-06 57.8 72 36.1
Rhsim04G0115100 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.2e-06 57.8 70 38.6
Thecc.03G171700 Theobroma cacao HOM05D000045 ORTHO05D000067 1.2e-06 57.8 55 52.7
arahy.Tifrunner.gnm1.ann1.1078FM Arachis hypogaea HOM05D005194 ORTHO05D003357 1.6e-06 57.4 118 31.4
arahy.Tifrunner.gnm1.ann1.PMV3RA Arachis hypogaea HOM05D005194 ORTHO05D003357 1.6e-06 57.4 125 31.2
arahy.Tifrunner.gnm1.ann1.RDS1N3 Arachis hypogaea HOM05D005194 ORTHO05D003357 1.6e-06 57.4 92 34.8
FvH4_3g26554 Fragaria vesca HOM05D000045 ORTHO05D012261 1.6e-06 57.4 62 45.2
Lj6g0005500 Lotus japonicus HOM05D009753 ORTHO05D010597 1.6e-06 57.4 82 35.4
RcHm_v2.0_Chr2g0118731 Rosa chinensis HOM05D005194 ORTHO05D010597 1.6e-06 57.4 66 42.4
RcHm_v2.0_Chr3g0491041 Rosa chinensis HOM05D019226 ORTHO05D012126 1.6e-06 57.4 75 46.7
arahy.Tifrunner.gnm1.ann1.1A3H86 Arachis hypogaea HOM05D005194 ORTHO05D003357 2.1e-06 57.0 128 30.5
CANSAT35G0493 Cannabis sativa HOM05D000045 ORTHO05D000067 2.1e-06 57.0 58 44.8
Lj2g0019596 Lotus japonicus HOM05D009753 ORTHO05D003357 2.1e-06 57.0 82 35.4
Lj2g0024159 Lotus japonicus HOM05D009753 ORTHO05D010597 2.1e-06 57.0 89 34.8
Lj5g0011132 Lotus japonicus HOM05D009753 ORTHO05D010597 2.1e-06 57.0 82 35.4
PSO210G0918 Papaver somniferum HOM05D000045 ORTHO05D000611 2.1e-06 57.0 61 47.5
RcHm_v2.0_Chr5g0043531 Rosa chinensis HOM05D019226 ORTHO05D012126 2.1e-06 57.0 66 48.5
arahy.Tifrunner.gnm1.ann1.30KSCZ Arachis hypogaea HOM05D005194 ORTHO05D003357 2.7e-06 56.6 128 30.5
arahy.Tifrunner.gnm1.ann1.710GGN Arachis hypogaea HOM05D005194 ORTHO05D003357 2.7e-06 56.6 92 34.8
arahy.Tifrunner.gnm1.ann1.KZL1N0 Arachis hypogaea HOM05D005194 ORTHO05D003357 2.7e-06 56.6 125 30.4
Cc00_g03490 Coffea canephora HOM05D000045 ORTHO05D000611 2.7e-06 56.6 54 48.1
Dinv08765 Davidia involucrata HOM05D000045 ORTHO05D000611 2.7e-06 56.6 55 49.1
Prupe.2G291000 Prunus persica HOM05D000045 ORTHO05D000067 2.7e-06 56.6 95 34.7
RhsimUnG0130200 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.7e-06 56.6 54 48.1
RcHm_v2.0_Chr5g0079421 Rosa chinensis HOM05D019226 ORTHO05D012126 2.7e-06 56.6 66 48.5
Atru.chr5.514 Acer truncatum HOM05D000045 ORTHO05D000067 3.5e-06 56.2 55 47.3
arahy.Tifrunner.gnm1.ann1.FPM2TZ Arachis hypogaea HOM05D005194 ORTHO05D003357 3.5e-06 56.2 125 32.8
arahy.Tifrunner.gnm1.ann1.Q7GSV1 Arachis hypogaea HOM05D005194 ORTHO05D003357 3.5e-06 56.2 128 30.5
arahy.Tifrunner.gnm1.ann1.X9ZFPD Arachis hypogaea HOM05D005194 ORTHO05D003357 3.5e-06 56.2 131 32.1
Ciclev10024536m.g Citrus clementina HOM05D000045 ORTHO05D000067 3.5e-06 56.2 83 37.3
arahy.Tifrunner.gnm1.ann1.B1LYNA Arachis hypogaea HOM05D005194 ORTHO05D003357 4.6e-06 55.8 118 31.4
arahy.Tifrunner.gnm1.ann1.BQ3TTJ Arachis hypogaea HOM05D005194 ORTHO05D003357 4.6e-06 55.8 125 31.2
arahy.Tifrunner.gnm1.ann1.KJ2SKP Arachis hypogaea HOM05D005194 ORTHO05D003357 4.6e-06 55.8 92 34.8
Duzib205G1238 Durio zibethinus HOM05D000045 ORTHO05D000067 4.6e-06 55.8 80 40.0
Cpa.g.sc9.289 Carica papaya HOM05D000045 ORTHO05D000611 6.0e-06 55.5 70 44.3
Migut.F01137 Erythranthe guttata HOM05D000045 ORTHO05D000067 6.0e-06 55.5 55 47.3
FvH4_2g06391 Fragaria vesca HOM05D015025 ORTHO05D015208 6.0e-06 55.5 57 47.4
FvH4_7g03536 Fragaria vesca HOM05D012208 ORTHO05D012261 6.0e-06 55.5 62 43.5
Gorai.006G037100 Gossypium raimondii HOM05D000045 ORTHO05D000067 6.0e-06 55.5 91 38.5
MBI05_g00397_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D004773 6.0e-06 55.5 90 40.0
Rhsim01G0048200 Rhododendron simsii HOM05D000045 ORTHO05D016986 6.0e-06 55.5 51 47.1
Sabra12G0103000 Salix brachista HOM05D000045 ORTHO05D000067 6.0e-06 55.5 53 52.8
TPR.G23136 Trifolium pratense HOM05D000045 ORTHO05D010597 6.0e-06 55.5 59 44.1
arahy.Tifrunner.gnm1.ann1.QR5X02 Arachis hypogaea HOM05D005194 ORTHO05D003357 7.8e-06 55.1 87 35.6
CANSAT01G2252 Cannabis sativa HOM05D000045 ORTHO05D000067 7.8e-06 55.1 73 41.1
Os07g0615900 Oryza sativa ssp. japonica HOM05D000045 ORTHO05D000067 7.8e-06 55.1 73 39.7
Rhsim05G0159900 Rhododendron simsii HOM05D000045 ORTHO05D000067 7.8e-06 55.1 66 40.9
RcHm_v2.0_Chr6g0276821 Rosa chinensis HOM05D000045 ORTHO05D000067 7.8e-06 55.1 79 38.0
TAR633G1461 Trochodendron aralioides HOM05D000045 ORTHO05D000067 7.8e-06 55.1 88 36.4
GSVIVG01012789001 Vitis vinifera HOM05D000045 ORTHO05D037848 7.8e-06 55.1 71 40.8
GSVIVG01036422001 Vitis vinifera HOM05D000045 ORTHO05D000611 7.8e-06 55.1 80 40.0
GSVIVG01036426001 Vitis vinifera HOM05D000045 ORTHO05D037848 7.8e-06 55.1 80 40.0


User provided reference genes

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