Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.2616 Acer truncatum HOM05D001324 ORTHO05D001220 1.5e-80 302.8 145 100.0
Ciclev10011111m.g Citrus clementina HOM05D001324 ORTHO05D001220 6.3e-15 84.7 131 40.5
Eucgr.D02568 Eucalyptus grandis HOM05D001324 ORTHO05D001220 4.1e-14 82.0 76 50.0
TAR636G0860 Trochodendron aralioides HOM05D001324 ORTHO05D001220 9.0e-14 80.9 153 35.9
Eucgr.D02566 Eucalyptus grandis HOM05D001324 ORTHO05D001220 3.4e-13 79.0 76 48.7
Hma1.2p1_0262F.1_g105360 Hydrangea macrophylla HOM05D001324 ORTHO05D001220 7.7e-13 77.8 136 36.0
Prupe.5G013900 Prunus persica HOM05D001324 ORTHO05D001220 7.7e-13 77.8 72 50.0
RcHm_v2.0_Chr7g0215241 Rosa chinensis HOM05D001324 ORTHO05D001220 1.0e-12 77.4 92 44.6
GSVIVG01036891001 Vitis vinifera HOM05D001324 ORTHO05D001220 1.3e-12 77.0 136 36.0
Thecc.03G320700 Theobroma cacao HOM05D001324 ORTHO05D001220 3.8e-12 75.5 142 37.3
PGR031G1408 Punica granatum HOM05D001324 ORTHO05D001220 2.5e-11 72.8 110 38.2
TAR636G3416 Trochodendron aralioides HOM05D001324 ORTHO05D001220 4.2e-11 72.0 145 34.5
Dinv37436 Davidia involucrata HOM05D001324 ORTHO05D001220 7.2e-11 71.2 141 36.2
QL12p003534 Quercus lobata HOM05D001324 ORTHO05D001220 7.2e-11 71.2 72 50.0
TAR625G0210 Trochodendron aralioides HOM05D001324 ORTHO05D001220 7.2e-11 71.2 71 49.3
Duzib205G0933 Durio zibethinus HOM05D001324 ORTHO05D001220 1.2e-10 70.5 72 51.4
CiPaw.11G073900 Carya illinoinensis HOM05D001324 ORTHO05D001220 2.1e-10 69.7 91 45.1
TWI34G1888 Tripterygium wilfordii HOM05D001324 ORTHO05D001220 2.7e-10 69.3 72 44.4
TAR636G1690 Trochodendron aralioides HOM05D001324 ORTHO05D001220 2.7e-10 69.3 71 47.9
Cc08_g06040 Coffea canephora HOM05D001324 ORTHO05D001220 3.6e-10 68.9 77 46.8
CiPaw.12G055700 Carya illinoinensis HOM05D001324 ORTHO05D001220 4.6e-10 68.6 84 45.2
Manes.15G184700 Manihot esculenta HOM05D001324 ORTHO05D001220 6.1e-10 68.2 63 52.4
CsaV3_4G014900 Cucumis sativus L. HOM05D001324 ORTHO05D001220 7.9e-10 67.8 77 48.1
QL12p003548 Quercus lobata HOM05D001324 ORTHO05D001220 1.4e-09 67.0 72 47.2
Aqoxy2G03477 Aquilegia oxysepala HOM05D001324 ORTHO05D001220 1.8e-09 66.6 78 44.9
ClCG11G016140 Citrullus lanatus HOM05D001324 ORTHO05D001220 1.8e-09 66.6 77 46.8
MELO3C010528.2 Cucumis melo HOM05D001324 ORTHO05D001220 1.8e-09 66.6 77 46.8
VMungo1215G2629 Vigna mungo HOM05D001324 ORTHO05D001220 3.0e-09 65.9 109 37.6
Actinidia18171 Actinidia chinensis HOM05D001324 ORTHO05D001220 5.1e-09 65.1 77 44.2
Psat2g145000 Pisum sativum HOM05D001324 ORTHO05D001220 5.1e-09 65.1 134 34.3
vmacro19832 Vaccinium macrocarpon HOM05D001324 ORTHO05D001220 5.1e-09 65.1 76 42.1
MSTRG.11856 Avicennia marina HOM05D001324 ORTHO05D001220 6.7e-09 64.7 71 45.1
Glyma.16G076300 Glycine max HOM05D001324 ORTHO05D001220 6.7e-09 64.7 88 39.8
Potri.004G234900 Populus trichocarpa HOM05D001324 ORTHO05D001220 6.7e-09 64.7 77 44.2
Lj2g0020750 Lotus japonicus HOM05D001324 ORTHO05D001220 8.8e-09 64.3 143 32.2
Phvul.003G278200 Phaseolus vulgaris HOM05D001324 ORTHO05D001220 1.1e-08 63.9 45 62.2
vmacro13861 Vaccinium macrocarpon HOM05D001324 ORTHO05D001220 1.1e-08 63.9 81 42.0
Rhsim07G0140600 Rhododendron simsii HOM05D001324 ORTHO05D001220 1.5e-08 63.5 71 43.7
Solyc08g005630.3 Solanum lycopersicum HOM05D001324 ORTHO05D001220 1.5e-08 63.5 71 45.1
PGSC0003DMG400018458 Solanum tuberosum HOM05D001324 ORTHO05D001220 1.5e-08 63.5 71 45.1
Lalb_Chr05g0229271 Lupinus albus HOM05D001324 ORTHO05D001220 2.0e-08 63.2 72 41.7
Medtr5g025650 Medicago truncatula HOM05D001324 ORTHO05D001220 2.0e-08 63.2 45 62.2
Medtr8g072210 Medicago truncatula HOM05D001324 ORTHO05D001220 2.0e-08 63.2 40 67.5
Cpa.g.c39162 Carica papaya HOM05D001324 ORTHO05D001220 2.5e-08 62.8 63 46.0
Lj4g0027468 Lotus japonicus HOM05D001324 ORTHO05D001220 2.5e-08 62.8 77 46.8
MBI04_g06272_MAGBIO Magnolia biondii HOM05D001324 ORTHO05D001220 2.5e-08 62.8 71 43.7
Ca_25051_v3 Cicer arietinum L. HOM05D001324 ORTHO05D001220 3.3e-08 62.4 78 41.0
Psat3g097880 Pisum sativum HOM05D001324 ORTHO05D001220 3.3e-08 62.4 102 41.2
Sopen08g001680 Solanum pennellii HOM05D001324 ORTHO05D001220 3.3e-08 62.4 71 43.7
Aa31LG6G1980 Aethionema arabicum HOM05D001324 ORTHO05D001220 7.4e-08 61.2 68 42.6
COL.COLO4_16744 Corchorus olitorius HOM05D001324 ORTHO05D001220 7.4e-08 61.2 72 47.2
Glyma.09G218100 Glycine max HOM05D001324 ORTHO05D001220 7.4e-08 61.2 144 34.7
Glyma.16G108900 Glycine max HOM05D001324 ORTHO05D001220 7.4e-08 61.2 82 40.2
Nn1g09338 Nelumbo nucifera HOM05D001324 ORTHO05D001220 9.7e-08 60.8 72 47.2
Carub.0007s2185 Capsella rubella HOM05D001324 ORTHO05D001220 1.3e-07 60.5 72 41.7
Peaxi162Scf00045g01026 Petunia axillaris HOM05D001324 ORTHO05D001220 1.7e-07 60.1 73 39.7
Solyc08g075240.3 Solanum lycopersicum HOM05D001324 ORTHO05D001220 1.7e-07 60.1 75 45.3
Sopen08g023840 Solanum pennellii HOM05D001324 ORTHO05D001220 1.7e-07 60.1 75 45.3
CSS0014043 Camellia sinensis var. sinensis HOM05D001324 ORTHO05D001220 2.2e-07 59.7 138 32.6
Glyma.01G152900 Glycine max HOM05D001324 ORTHO05D001220 2.2e-07 59.7 138 29.7
Lalb_Chr16g0380451 Lupinus albus HOM05D001324 ORTHO05D001220 2.2e-07 59.7 146 30.8
SalBow4G2259 Salvia bowleyana HOM05D001324 ORTHO05D001220 2.2e-07 59.7 72 40.3
CANSAT35G0952 Cannabis sativa HOM05D001324 ORTHO05D001220 6.3e-07 58.2 95 36.8
Nitab4.5_0000236g0010 Nicotiana tabacum HOM05D001324 ORTHO05D001220 1.1e-06 57.4 71 39.4
CAN.G1078.7 Capsicum annuum HOM05D001324 ORTHO05D001220 1.4e-06 57.0 71 40.8
Phvul.002G122600 Phaseolus vulgaris HOM05D001324 ORTHO05D001220 1.4e-06 57.0 61 42.6
VMungo0251G3610 Vigna mungo HOM05D001324 ORTHO05D001220 1.4e-06 57.0 68 41.2
AL7G34780 Arabidopsis lyrata HOM05D001324 ORTHO05D001220 1.8e-06 56.6 63 44.4
AT4G19380 Arabidopsis thaliana HOM05D001324 ORTHO05D001220 1.8e-06 56.6 75 42.7
BcaC09g51417 Brassica carinata HOM05D001324 ORTHO05D001220 2.4e-06 56.2 71 35.2
BolC1t01309H Brassica oleracea HOM05D001324 ORTHO05D001220 2.4e-06 56.2 71 35.2
Peaxi162Scf00045g01025 Petunia axillaris HOM05D001324 ORTHO05D001220 3.1e-06 55.8 73 38.4
arahy.Tifrunner.gnm1.ann1.U6CSQK Arachis hypogaea HOM05D001324 ORTHO05D001220 4.1e-06 55.5 63 39.7
arahy.Tifrunner.gnm1.ann1.ZD9EP0 Arachis hypogaea HOM05D001324 ORTHO05D001220 4.1e-06 55.5 63 39.7
CDE11G0308 Ceratophyllum demersum HOM05D001324 ORTHO05D001220 4.1e-06 55.5 92 33.7
Nitab4.5_0006244g0010 Nicotiana tabacum HOM05D001324 ORTHO05D001220 4.1e-06 55.5 66 42.4
CARHR226170 Cardamine hirsuta HOM05D001324 ORTHO05D001220 5.3e-06 55.1 63 39.7
Peaxi162Scf00045g01020 Petunia axillaris HOM05D001324 ORTHO05D001220 5.3e-06 55.1 73 38.4
A01p11330 Brassica napus HOM05D001324 ORTHO05D001220 6.9e-06 54.7 71 35.2
C01p13340 Brassica napus HOM05D001324 ORTHO05D001220 6.9e-06 54.7 71 35.2
BraA01t01077Z Brassica rapa HOM05D001324 ORTHO05D001220 6.9e-06 54.7 71 35.2
Peaxi162Scf00045g00821 Petunia axillaris HOM05D001324 ORTHO05D001220 6.9e-06 54.7 71 36.6
Thhalv10024528m.g Eutrema salsugineum HOM05D001324 ORTHO05D001220 9.1e-06 54.3 63 36.5
Peaxi162Scf00550g00440 Petunia axillaris HOM05D001324 ORTHO05D001220 9.1e-06 54.3 71 39.4
Sed0000449 Sechium edule HOM05D001324 ORTHO05D001220 9.1e-06 54.3 75 37.3


User provided reference genes

Program Settings