Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.2509 Acer truncatum HOM05D002855 ORTHO05D004406 8.2e-299 1029.6 528 100.0
Ciclev10011193m.g Citrus clementina HOM05D002855 ORTHO05D004406 4.9e-118 429.1 462 51.5
TAR633G1422 Trochodendron aralioides HOM05D002855 ORTHO05D004406 3.4e-111 406.4 432 52.3
TAR369G1034 Trochodendron aralioides HOM05D002855 ORTHO05D004406 5.5e-109 399.1 538 46.1
Nn2g12814 Nelumbo nucifera HOM05D002855 ORTHO05D004406 2.7e-108 396.7 526 45.4
CiPaw.13G102800 Carya illinoinensis HOM05D002855 ORTHO05D004406 3.5e-108 396.4 481 49.5
Duzib128G1501 Durio zibethinus HOM05D002855 ORTHO05D004406 1.0e-107 394.8 391 52.2
Hma1.2p1_0746F.1_g212280 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 1.8e-107 394.0 440 50.5
Phvul.L002003 Phaseolus vulgaris HOM05D002855 ORTHO05D004406 1.8e-107 394.0 497 46.5
CANSAT54G2256 Cannabis sativa HOM05D002855 ORTHO05D004406 2.3e-107 393.7 523 44.9
Dinv18704 Davidia involucrata HOM05D002855 ORTHO05D004406 3.9e-107 392.9 431 51.3
Glyma.13G330500 Glycine max HOM05D002855 ORTHO05D004406 3.9e-107 392.9 504 46.4
VMungo1080G0735 Vigna mungo HOM05D002855 ORTHO05D004406 3.9e-107 392.9 501 46.7
QL01p035172 Quercus lobata HOM05D002855 ORTHO05D004406 5.1e-107 392.5 482 49.0
Thecc.05G049900 Theobroma cacao HOM05D002855 ORTHO05D004406 5.1e-107 392.5 379 53.0
Manes.04G028200 Manihot esculenta HOM05D002855 ORTHO05D004406 6.7e-107 392.1 501 47.3
COL.COLO4_18410 Corchorus olitorius HOM05D002855 ORTHO05D004406 2.5e-106 390.2 474 47.5
Psat5g281800 Pisum sativum HOM05D002855 ORTHO05D004406 3.3e-106 389.8 436 50.5
Ca_01364_v3 Cicer arietinum L. HOM05D002855 ORTHO05D004406 5.6e-106 389.0 453 49.4
Glyma.15G043500 Glycine max HOM05D002855 ORTHO05D004406 5.6e-106 389.0 505 45.5
arahy.Tifrunner.gnm1.ann1.3PXT9K Arachis hypogaea HOM05D002855 ORTHO05D004406 7.4e-106 388.7 399 51.9
Carub.0005s1167 Capsella rubella HOM05D002855 ORTHO05D004406 7.4e-106 388.7 516 45.9
PSO384G0780 Papaver somniferum HOM05D002855 ORTHO05D004406 7.4e-106 388.7 408 51.5
Cpa.g.sc139.9 Carica papaya HOM05D002855 ORTHO05D004406 9.6e-106 388.3 528 45.1
FAN16G1875 Fragaria x ananassa HOM05D002855 ORTHO05D004406 1.3e-105 387.9 468 47.2
Lsat_1_v5_gn_5_166940 Lactuca sativa HOM05D002855 ORTHO05D004406 1.3e-105 387.9 477 48.6
Cfa011411 Carpinus fangiana HOM05D002855 ORTHO05D004406 2.1e-105 387.1 436 50.7
MBI14_g42162_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 2.1e-105 387.1 449 49.0
TAR623G1741 Trochodendron aralioides HOM05D002855 ORTHO05D004406 2.1e-105 387.1 530 46.0
Lj3g0004926 Lotus japonicus HOM05D002855 ORTHO05D004406 2.8e-105 386.7 452 49.6
Medtr2g096000 Medicago truncatula HOM05D002855 ORTHO05D004406 2.8e-105 386.7 453 49.9
Atru.chr3.3777 Acer truncatum HOM05D002855 ORTHO05D004406 3.7e-105 386.3 520 45.0
Gohir.A05G099600 Gossypium hirsutum HOM05D002855 ORTHO05D004406 3.7e-105 386.3 438 49.1
HanXRQChr04g0110371 Helianthus annuus HOM05D002855 ORTHO05D004406 3.7e-105 386.3 399 52.1
Thecc.09G332800 Theobroma cacao HOM05D002855 ORTHO05D004406 3.7e-105 386.3 494 47.4
TWI79G0463 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 3.7e-105 386.3 494 47.6
Prupe.6G088700 Prunus persica HOM05D002855 ORTHO05D004406 4.8e-105 386.0 530 45.5
Duzib168G0993 Durio zibethinus HOM05D002855 ORTHO05D004406 6.2e-105 385.6 486 46.7
Manes.11G137500 Manihot esculenta HOM05D002855 ORTHO05D004406 6.2e-105 385.6 527 45.2
RcHm_v2.0_Chr5g0062031 Rosa chinensis HOM05D002855 ORTHO05D004406 6.2e-105 385.6 525 45.1
Sabra16G0140100 Salix brachista HOM05D002855 ORTHO05D004406 8.2e-105 385.2 526 45.2
Ciclev10027686m.g Citrus clementina HOM05D002855 ORTHO05D004406 1.4e-104 384.4 484 47.5
Haze_23986 Corylus avellana HOM05D002855 ORTHO05D004406 1.4e-104 384.4 473 48.4
Haze_23987 Corylus avellana HOM05D002855 ORTHO05D004406 1.4e-104 384.4 473 48.4
Gorai.009G103400 Gossypium raimondii HOM05D002855 ORTHO05D004406 1.4e-104 384.4 438 49.5
Potri.001G233800 Populus trichocarpa HOM05D002855 ORTHO05D004406 1.4e-104 384.4 510 46.1
TWI75G0055 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 1.4e-104 384.4 498 46.2
ClCG02G020560 Citrullus lanatus HOM05D002855 ORTHO05D004406 1.8e-104 384.0 462 48.5
FAN11G1910 Fragaria x ananassa HOM05D002855 ORTHO05D004406 1.8e-104 384.0 514 44.7
Sed0021885 Sechium edule HOM05D002855 ORTHO05D004406 1.8e-104 384.0 472 48.3
ECA248G3817 Erigeron canadensis HOM05D002855 ORTHO05D004406 2.4e-104 383.6 410 49.8
FvH4_3g34430 Fragaria vesca HOM05D002855 ORTHO05D004406 2.4e-104 383.6 514 44.7
Dinv32829 Davidia involucrata HOM05D002855 ORTHO05D004406 3.1e-104 383.3 513 46.0
MD03G1106200 Malus domestica HOM05D002855 ORTHO05D004406 3.1e-104 383.3 528 45.6
MD11G1118300 Malus domestica HOM05D002855 ORTHO05D004406 3.1e-104 383.3 470 48.9
arahy.Tifrunner.gnm1.ann1.R78DWG Arachis hypogaea HOM05D002855 ORTHO05D004406 4.0e-104 382.9 471 47.8
Lalb_Chr22g0350071 Lupinus albus HOM05D002855 ORTHO05D004406 4.0e-104 382.9 515 46.0
Lalb_Chr22g0350101 Lupinus albus HOM05D002855 ORTHO05D004406 4.0e-104 382.9 511 45.4
Aqoxy4G03112 Aquilegia oxysepala HOM05D002855 ORTHO05D004406 6.9e-104 382.1 457 47.0
Gohir.D05G099500 Gossypium hirsutum HOM05D002855 ORTHO05D004406 6.9e-104 382.1 438 49.1
THA.LOC104810821 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 9.0e-104 381.7 492 47.0
CsaV3_6G022000 Cucumis sativus L. HOM05D002855 ORTHO05D004406 1.2e-103 381.3 523 45.1
Migut.D02157 Erythranthe guttata HOM05D002855 ORTHO05D004406 1.5e-103 380.9 382 51.8
MELO3C025710.2 Cucumis melo HOM05D002855 ORTHO05D004406 2.6e-103 380.2 529 45.0
CARHR154140 Cardamine hirsuta HOM05D002855 ORTHO05D004406 3.4e-103 379.8 542 43.7
Migut.N02644 Erythranthe guttata HOM05D002855 ORTHO05D004406 3.4e-103 379.8 430 49.3
Nn2g10571 Nelumbo nucifera HOM05D002855 ORTHO05D004406 3.4e-103 379.8 525 45.9
FAN21G1667 Fragaria x ananassa HOM05D002855 ORTHO05D004406 4.5e-103 379.4 514 44.4
FAN25G2944 Fragaria x ananassa HOM05D002855 ORTHO05D004406 4.5e-103 379.4 514 44.4
AL5G24520 Arabidopsis lyrata HOM05D002855 ORTHO05D004406 5.8e-103 379.0 533 44.1
MSTRG.18613 Avicennia marina HOM05D002855 ORTHO05D004406 5.8e-103 379.0 494 46.2
Rhsim01G0223400 Rhododendron simsii HOM05D002855 ORTHO05D004406 5.8e-103 379.0 424 50.2
SalBow3G0437 Salvia bowleyana HOM05D002855 ORTHO05D004406 5.8e-103 379.0 388 51.5
CAN.G84.3 Capsicum annuum HOM05D002855 ORTHO05D004406 7.6e-103 378.6 474 48.3
COL.COLO4_10308 Corchorus olitorius HOM05D002855 ORTHO05D004406 7.6e-103 378.6 460 45.2
Gohir.A08G000105 Gossypium hirsutum HOM05D002855 ORTHO05D004406 7.6e-103 378.6 472 46.8
Gohir.D08G009200 Gossypium hirsutum HOM05D002855 ORTHO05D004406 7.6e-103 378.6 473 46.9
Gorai.004G002400 Gossypium raimondii HOM05D002855 ORTHO05D004406 7.6e-103 378.6 473 46.9
Gohir.A03G036400 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.0e-102 378.3 551 43.7
Eucgr.B02434 Eucalyptus grandis HOM05D002855 ORTHO05D004406 1.7e-102 377.5 489 44.6
CiPaw.13G103000 Carya illinoinensis HOM05D002855 ORTHO05D004406 2.2e-102 377.1 528 44.7
Cc01_g11990 Coffea canephora HOM05D002855 ORTHO05D004406 2.2e-102 377.1 484 45.7
Thhalv10002373m.g Eutrema salsugineum HOM05D002855 ORTHO05D004406 2.9e-102 376.7 542 44.3
Hma1.2p1_0035F.1_g021730 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 3.8e-102 376.3 446 47.1
Sc12g0001880 Simmondsia chinensis HOM05D002855 ORTHO05D004406 6.5e-102 375.6 528 42.8
Sopen11g030480 Solanum pennellii HOM05D002855 ORTHO05D004406 6.5e-102 375.6 421 50.1
unitig_899.g14902 Utricularia gibba HOM05D002855 ORTHO05D004406 6.5e-102 375.6 493 44.6
AT3G45830 Arabidopsis thaliana HOM05D002855 ORTHO05D004406 8.4e-102 375.2 538 43.5
PGSC0003DMG400015522 Solanum tuberosum HOM05D002855 ORTHO05D004406 8.4e-102 375.2 421 49.9
TPR.G11598 Trifolium pratense HOM05D002855 ORTHO05D004406 1.1e-101 374.8 504 44.4
Actinidia14088 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.4e-101 374.4 373 52.0
Sabra09G0017300 Salix brachista HOM05D002855 ORTHO05D004406 1.4e-101 374.4 433 49.0
BcaB01g01053 Brassica carinata HOM05D002855 ORTHO05D004406 2.5e-101 373.6 482 46.3
Duzib170G0969 Durio zibethinus HOM05D002855 ORTHO05D004406 3.2e-101 373.2 479 45.9
PGR102G1726 Punica granatum HOM05D002855 ORTHO05D004406 4.2e-101 372.9 416 49.5
Sp5g15700 Schrenkiella parvula HOM05D002855 ORTHO05D004406 4.2e-101 372.9 499 44.7
MBI05_g19645_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 5.5e-101 372.5 517 43.5
Nitab4.5_0003784g0030 Nicotiana tabacum HOM05D002855 ORTHO05D004406 7.1e-101 372.1 457 47.7
CSS0016445 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 9.3e-101 371.7 485 44.3
C03p70400 Brassica napus HOM05D002855 ORTHO05D004406 1.2e-100 371.3 482 46.1
BolC3t19280H Brassica oleracea HOM05D002855 ORTHO05D004406 2.1e-100 370.5 482 46.1
BraA06t25210Z Brassica rapa HOM05D002855 ORTHO05D004406 2.7e-100 370.2 482 45.9
Gohir.D03G131800 Gossypium hirsutum HOM05D002855 ORTHO05D004406 2.7e-100 370.2 517 44.7
Gorai.003G138700 Gossypium raimondii HOM05D002855 ORTHO05D004406 4.6e-100 369.4 517 44.7
THA.LOC104814856 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 4.6e-100 369.4 522 43.5
HPP92_001698 Vanilla planifolia HOM05D002855 ORTHO05D004406 4.6e-100 369.4 505 44.6
AUR62001859 Chenopodium quinoa HOM05D002855 ORTHO05D004406 6.1e-100 369.0 474 46.0
Solyc11g072810.2 Solanum lycopersicum HOM05D002855 ORTHO05D004406 7.9e-100 368.6 488 45.7
ATR0594G221 Amborella trichopoda HOM05D002855 ORTHO05D004406 1.0e-99 368.2 476 47.7
Oeu041006.2 Olea europaea HOM05D002855 ORTHO05D004406 1.3e-99 367.9 512 43.8
Nitab4.5_0002380g0080 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.8e-99 367.5 491 45.4
BcaC01g01947 Brassica carinata HOM05D002855 ORTHO05D004406 2.3e-99 367.1 482 45.9
Rhsim01G0216000 Rhododendron simsii HOM05D002855 ORTHO05D004406 2.3e-99 367.1 463 46.7
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 3.0e-99 366.7 448 46.0
HanXRQChr14g0429221 Helianthus annuus HOM05D002855 ORTHO05D004406 5.1e-99 365.9 455 46.4
AUR62009654 Chenopodium quinoa HOM05D002855 ORTHO05D004406 3.3e-98 363.2 501 44.1
Potri.009G026100 Populus trichocarpa HOM05D002855 ORTHO05D004406 1.6e-97 360.9 321 58.9
Hund18948 Selenicereus undatus HOM05D002855 ORTHO05D004406 3.7e-97 359.8 461 44.7
HPP92_000643 Vanilla planifolia HOM05D002855 ORTHO05D004406 1.4e-96 357.8 495 43.8
EL10Ac7g15933 Beta vulgaris HOM05D002855 ORTHO05D004406 2.4e-96 357.1 496 43.8
Peaxi162Scf00836g00219 Petunia axillaris HOM05D002855 ORTHO05D004406 2.4e-96 357.1 529 42.5
SHI05981 Sapria himalayana HOM05D002855 ORTHO05D004406 3.1e-96 356.7 438 45.9
CDE02G2912 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 9.0e-96 355.1 384 49.5
DCAR_018861 Daucus carota HOM05D002855 ORTHO05D004406 9.0e-96 355.1 504 43.8
DCAR_018860 Daucus carota HOM05D002855 ORTHO05D004406 1.3e-94 351.3 320 56.9
SGA_v2.0_scaffold194G40747 Striga asiatica HOM05D002855 ORTHO05D004406 7.2e-93 345.5 505 42.4
SEGI_18775 Sequoiadendron giganteum HOM05D002855 ORTHO05D004406 4.6e-92 342.8 512 41.0
Cc06_g03300 Coffea canephora HOM05D002855 ORTHO05D004406 3.3e-90 336.7 418 44.5
PSO832G3558 Papaver somniferum HOM05D002855 ORTHO05D004406 7.4e-90 335.5 434 47.0
RhsimUnG0121200 Rhododendron simsii HOM05D002855 ORTHO05D004406 7.4e-90 335.5 473 42.7
Ah.08g215040 Amaranthus hybridus HOM05D002855 ORTHO05D004406 1.7e-89 334.3 380 48.9
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 1.8e-88 330.9 357 48.5
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 1.8e-88 330.9 357 48.5
Nitab4.5_0000202g0400 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.8e-88 330.9 408 44.4
Nitab4.5_0011917g0020 Nicotiana tabacum HOM05D002855 ORTHO05D004406 4.1e-88 329.7 390 46.4
Peaxi162Scf00472g00082 Petunia axillaris HOM05D002855 ORTHO05D004406 6.9e-88 328.9 493 40.2
Zm00001eb265670 Zea mays HOM05D002855 ORTHO05D004406 4.5e-87 326.2 414 44.7
Actinidia00807 Actinidia chinensis HOM05D002855 ORTHO05D004406 5.9e-87 325.9 450 45.3
Pp3c17_22910 Physcomitrium patens HOM05D002855 ORTHO05D004406 2.2e-86 323.9 426 43.7
Zm00001eb355300 Zea mays HOM05D002855 ORTHO05D004406 1.1e-85 321.6 415 43.4
Mapoly0002s0042 Marchantia polymorpha HOM05D002855 ORTHO05D004406 7.2e-85 318.9 318 51.6
Os05g0117864 Oryza sativa ssp. japonica HOM05D002855 ORTHO05D004406 9.4e-85 318.5 568 39.1
Sc01g0003750 Simmondsia chinensis HOM05D002855 ORTHO05D004406 6.1e-84 315.8 356 46.6
CSS0021829 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 1.0e-83 315.1 338 52.4
Actinidia37270 Actinidia chinensis HOM05D002855 ORTHO05D004406 8.8e-83 312.0 378 47.4
Prupe.6G245300 Prunus persica HOM05D002855 ORTHO05D004406 1.8e-80 304.3 348 46.6
AagrBONN_evm.TU.Sc2ySwM_228.4027 Anthoceros agrestis HOM05D002855 ORTHO05D004406 4.1e-72 276.6 559 35.8
vmacro14496 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 1.3e-70 271.6 225 60.0
Lj2P104T63 Lonicera japonica HOM05D002855 ORTHO05D004406 5.0e-70 269.6 278 47.1
unitig_736.g22427 Utricularia gibba HOM05D002855 ORTHO05D004406 5.5e-69 266.2 225 56.0
Pp3c14_23790 Physcomitrium patens HOM05D002855 ORTHO05D004406 1.6e-63 248.1 213 55.4
CBR_g17672 Chara braunii HOM05D002855 ORTHO05D004406 2.7e-63 247.3 353 42.5
Gorai.001G248600 Gossypium raimondii HOM05D002855 ORTHO05D004406 6.5e-62 242.7 507 34.7
CDE09G0123 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 5.9e-55 219.5 384 36.7
FvH4_6g14850 Fragaria vesca HOM05D002855 ORTHO05D004406 8.6e-54 215.7 209 52.2
RcHm_v2.0_Chr3g0468071 Rosa chinensis HOM05D000001 ORTHO05D009676 2.5e-53 214.2 210 52.9
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 4.2e-53 213.4 209 51.7
Gohir.D13G096325 Gossypium hirsutum HOM05D002855 ORTHO05D004406 2.3e-51 207.6 456 34.6
PGSC0003DMG402010988 Solanum tuberosum HOM05D002855 ORTHO05D004406 2.5e-45 187.6 167 53.3
FvH4_6g14860 Fragaria vesca HOM05D002855 ORTHO05D035540 3.3e-45 187.2 188 51.1
Sopen10g033890 Solanum pennellii HOM05D002855 ORTHO05D004406 7.3e-45 186.0 170 52.9
Sopen10g033910 Solanum pennellii HOM05D002855 ORTHO05D004406 1.6e-44 184.9 167 52.7
Sopen06g015720 Solanum pennellii HOM05D002855 ORTHO05D004406 2.1e-44 184.5 167 52.7
FAN09G4588 Fragaria x ananassa HOM05D000001 ORTHO05D009676 2.8e-44 184.1 202 49.0
Actinidia07087 Actinidia chinensis HOM05D002855 ORTHO05D004406 3.6e-44 183.7 214 45.8
Sopen06g015690 Solanum pennellii HOM05D002855 ORTHO05D004406 6.1e-44 183.0 167 52.1
Sopen10g033920 Solanum pennellii HOM05D002855 ORTHO05D004406 8.0e-44 182.6 170 51.8
Sopen06g015700 Solanum pennellii HOM05D002855 ORTHO05D004406 1.4e-43 181.8 167 52.7
SMO118G0514 Selaginella moellendorffii HOM05D002855 ORTHO05D004406 1.8e-43 181.4 166 51.8
FAN09G2794 Fragaria x ananassa HOM05D002855 ORTHO05D035540 1.5e-42 178.3 188 50.0
Hma1.2p1_0111F.1_g053510 Hydrangea macrophylla HOM05D002855 ORTHO05D029235 1.5e-37 161.8 218 43.6
Sopen10g033900 Solanum pennellii HOM05D002855 ORTHO05D004406 5.6e-37 159.8 136 53.7
A06p21220 Brassica napus HOM05D002855 ORTHO05D004406 1.6e-36 158.3 300 37.3
Dinv37234 Davidia involucrata HOM05D002855 ORTHO05D029235 4.7e-36 156.8 310 36.8
Sopen06g015670 Solanum pennellii HOM05D002855 ORTHO05D004406 1.5e-34 151.8 146 52.7
Sopen06g015680 Solanum pennellii HOM05D002855 ORTHO05D004406 1.5e-34 151.8 146 52.7
Hma1.2p1_0111F.1_g053470 Hydrangea macrophylla HOM05D002855 ORTHO05D029235 4.4e-34 150.2 332 34.3
vmacro20088 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 5.4e-32 143.3 269 35.7
Dinv37233 Davidia involucrata HOM05D002855 ORTHO05D004406 4.6e-31 140.2 110 60.0
Lj3P975T65 Lonicera japonica HOM05D002855 ORTHO05D029235 6.0e-23 113.2 140 42.9
Lj2E1045T0 Lonicera japonica HOM05D002855 ORTHO05D004406 1.4e-19 102.1 74 60.8
Actinidia03767 Actinidia chinensis HOM05D002855 ORTHO05D004406 8.9e-19 99.4 124 47.6
vmacro14495 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 1.6e-15 88.6 181 35.9
unitig_736.g22426 Utricularia gibba HOM05D002855 ORTHO05D004406 1.5e-13 82.0 227 31.3
FAN05G2826 Fragaria x ananassa HOM05D000001 ORTHO05D009676 3.3e-13 80.9 71 53.5


User provided reference genes

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