Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 8.9e-276 953.0 477 100.0
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 2.5e-217 758.8 477 80.3
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 4.1e-212 741.5 485 76.3
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 1.3e-210 736.5 478 76.6
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 4.6e-208 728.0 480 75.2
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 4.3e-206 721.5 484 73.8
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 3.4e-203 711.8 479 75.2
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 5.0e-202 708.0 479 74.1
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 2.3e-199 699.1 478 72.4
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 2.5e-198 695.7 470 74.7
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 3.3e-198 695.3 471 71.8
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 4.3e-198 694.9 477 72.7
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 5.7e-198 694.5 480 70.6
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 1.7e-197 693.0 471 71.8
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 1.5e-195 686.4 475 71.8
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 2.0e-195 686.0 480 70.6
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 4.5e-195 684.9 471 70.9
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 1.7e-194 682.9 471 70.9
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 3.8e-194 681.8 430 76.7
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 5.0e-194 681.4 488 72.3
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 1.1e-193 680.2 514 67.9
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 1.2e-192 676.8 474 70.5
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 2.1e-192 676.0 456 73.7
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 4.7e-192 674.9 478 70.3
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 1.4e-191 673.3 434 76.7
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 1.8e-191 672.9 498 68.1
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 3.0e-191 672.2 422 77.7
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 8.8e-191 670.6 422 78.0
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 1.5e-190 669.8 439 74.3
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 5.7e-190 667.9 511 68.7
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 1.3e-189 666.8 478 71.5
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 2.2e-189 666.0 473 69.6
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 3.7e-189 665.2 423 76.4
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 1.8e-188 662.9 422 76.1
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 4.2e-185 651.7 480 69.6
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 4.2e-185 651.7 421 74.3
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 5.5e-185 651.4 530 64.5
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 7.2e-185 651.0 411 76.9
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 7.2e-185 651.0 421 74.6
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 9.4e-185 650.6 423 75.2
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 3.6e-184 648.7 467 68.5
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 3.0e-183 645.6 485 69.3
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 4.0e-183 645.2 449 69.9
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 5.2e-183 644.8 460 70.2
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 1.5e-182 643.3 456 70.0
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 5.7e-182 641.3 454 70.5
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 7.5e-182 641.0 417 76.0
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 2.4e-180 636.0 406 76.1
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 2.7e-179 632.5 461 68.5
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 7.7e-179 630.9 480 65.8
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 3.8e-178 628.6 469 69.9
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 2.7e-176 622.5 411 73.7
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 1.8e-175 619.8 443 69.1
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 1.8e-175 619.8 421 72.4
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 5.2e-175 618.2 489 66.9
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 8.8e-175 617.5 449 65.3
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 8.8e-175 617.5 419 74.9
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 8.8e-175 617.5 428 71.0
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.6e-174 615.9 512 62.1
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 9.8e-174 614.0 446 68.4
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 3.5e-171 605.5 421 70.3
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 4.5e-171 605.1 445 68.5
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 5.9e-171 604.7 431 69.6
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 7.7e-171 604.4 485 65.6
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 5.0e-170 601.7 443 68.6
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 1.1e-169 600.5 476 64.9
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 1.1e-169 600.5 455 66.6
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 5.5e-169 598.2 424 69.6
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 7.2e-169 597.8 462 66.5
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 9.4e-169 597.4 478 64.0
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 1.6e-168 596.7 452 67.3
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 1.4e-167 593.6 454 66.5
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 2.3e-167 592.8 410 70.0
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 8.8e-167 590.9 477 63.7
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.0e-166 589.7 480 63.3
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 3.7e-165 585.5 419 67.5
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 1.1e-164 583.9 402 71.1
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 5.4e-164 581.6 512 59.8
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 5.9e-163 578.2 460 62.0
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 1.3e-162 577.0 428 66.8
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 5.0e-162 575.1 349 79.7
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 1.5e-161 573.5 372 76.6
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 1.6e-160 570.1 563 55.6
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 4.7e-160 568.5 427 66.5
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 4.4e-158 562.0 349 78.5
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 3.6e-152 542.3 401 67.8
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 8.9e-151 537.7 393 68.2
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 3.3e-145 519.2 370 68.1
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 2.3e-143 513.1 455 60.0
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 3.7e-141 505.8 372 69.4
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 1.2e-139 500.7 440 56.1
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 4.7e-136 488.8 482 56.6
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 1.1e-135 487.6 423 56.5
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 4.0e-135 485.7 324 73.8
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 1.0e-130 471.1 421 58.7
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 7.3e-129 464.9 413 55.7
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 1.3e-122 444.1 323 69.0
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 5.1e-122 442.2 306 75.2
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 1.3e-117 427.6 464 47.6
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 4.9e-109 399.1 412 50.2
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 2.8e-104 383.3 265 73.2
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 1.2e-102 377.9 283 67.1
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 8.2e-88 328.6 192 80.7
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 1.0e-82 311.6 299 52.2
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 3.9e-82 309.7 185 77.8
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 9.1e-79 298.5 246 63.0
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 1.6e-70 271.2 303 52.5
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 3.7e-64 250.0 167 72.5
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 1.0e-58 231.9 180 66.7
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 1.7e-48 198.0 260 44.6
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 3.0e-42 177.2 121 69.4
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 6.8e-42 176.0 128 68.8
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 9.8e-41 172.2 291 42.6
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 4.9e-40 169.9 146 58.2
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 2.0e-38 164.5 122 63.9
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 4.6e-38 163.3 156 54.5
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 2.6e-33 147.5 236 39.8
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 6.4e-32 142.9 134 56.7
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 8.3e-32 142.5 98 66.3
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 1.1e-31 142.1 111 63.1
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 3.3e-28 130.6 468 27.6
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 8.1e-27 125.9 103 61.2
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 2.2e-24 117.9 283 33.6
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 2.4e-23 114.4 96 59.4
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 1.4e-18 98.6 109 50.5
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 3.4e-17 94.0 77 53.2
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 8.4e-16 89.4 54 79.6
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 9.2e-15 85.9 54 70.4
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 3.9e-13 80.5 46 82.6
Cre09.g389400 Chlamydomonas reinhardtii HOM05D002474 ORTHO05D006727 1.5e-12 78.6 270 25.6
PRCOL_00006911 Prasinoderma coloniale HOM05D002474 ORTHO05D006727 2.5e-12 77.8 479 24.6
Peaxi162Scf00036g01918 Petunia axillaris HOM05D002474 ORTHO05D006727 4.3e-12 77.0 57 59.6
Peaxi162Scf00781g00210 Petunia axillaris HOM05D002474 ORTHO05D006727 9.6e-12 75.9 57 57.9
Glyma.13G065601 Glycine max HOM05D002474 ORTHO05D006727 8.4e-08 62.8 49 63.3
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 8.4e-08 62.8 31 90.3
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 1.4e-07 62.0 34 82.4


User provided reference genes

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