Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.2473 Acer truncatum HOM05D007804 ORTHO05D009828 2.3e-55 219.5 209 100.0
Ciclev10012771m.g Citrus clementina HOM05D007804 ORTHO05D009828 3.8e-21 105.9 195 43.6
Gohir.D09G022600 Gossypium hirsutum HOM05D007804 ORTHO05D009828 6.2e-16 88.6 208 38.9
Gorai.006G026600 Gossypium raimondii HOM05D007804 ORTHO05D009828 1.1e-15 87.8 208 41.3
Gohir.A09G023300 Gossypium hirsutum HOM05D007804 ORTHO05D009828 1.2e-14 84.3 208 39.4
Duzib147G0590 Durio zibethinus HOM05D007804 ORTHO05D009828 1.5e-14 84.0 216 34.3
COL.COLO4_36996 Corchorus olitorius HOM05D007804 ORTHO05D009828 7.6e-14 81.6 193 34.2
Cfa007487 Carpinus fangiana HOM05D007804 ORTHO05D009828 1.0e-13 81.3 190 34.7
Thecc.04G069800 Theobroma cacao HOM05D007804 ORTHO05D009828 2.2e-13 80.1 210 33.8
ClCG09G018550 Citrullus lanatus HOM05D007804 ORTHO05D009828 1.4e-12 77.4 181 48.6
Glyma.13G067400 Glycine max HOM05D007804 ORTHO05D009828 5.5e-12 75.5 185 47.6
Manes.15G177500 Manihot esculenta HOM05D007804 ORTHO05D009828 5.5e-12 75.5 185 39.5
CsaV3_5G037680 Cucumis sativus L. HOM05D007804 ORTHO05D009828 7.1e-12 75.1 203 49.3
Glyma.19G017000 Glycine max HOM05D007804 ORTHO05D009828 9.3e-12 74.7 197 42.6
Cpa.g.sc14.66 Carica papaya HOM05D007804 ORTHO05D009828 2.7e-11 73.2 185 36.2
CiPaw.03G032600 Carya illinoinensis HOM05D007804 ORTHO05D009828 2.7e-11 73.2 193 34.7
MELO3C021487.2 Cucumis melo HOM05D007804 ORTHO05D009828 2.7e-11 73.2 185 49.2
Medtr6g009320 Medicago truncatula HOM05D007804 ORTHO05D009828 3.5e-11 72.8 192 35.9
Prupe.3G275600 Prunus persica HOM05D007804 ORTHO05D009828 6.1e-11 72.0 180 32.2
QL02p079311 Quercus lobata HOM05D007804 ORTHO05D009828 1.3e-10 70.9 184 33.2
Psat1g077160 Pisum sativum HOM05D007804 ORTHO05D009828 1.8e-10 70.5 182 45.6
Sed0002452 Sechium edule HOM05D007804 ORTHO05D009828 5.1e-10 68.9 188 41.5
Phvul.004G023300 Phaseolus vulgaris HOM05D007804 ORTHO05D009828 8.7e-10 68.2 188 36.7
Psat1g077320 Pisum sativum HOM05D007804 ORTHO05D009828 1.5e-09 67.4 182 29.7
Manes.17G117500 Manihot esculenta HOM05D007804 ORTHO05D009828 1.9e-09 67.0 185 30.8
CSS0004616 Camellia sinensis var. sinensis HOM05D007804 ORTHO05D009828 2.5e-09 66.6 178 39.3
Lj2g0027470 Lotus japonicus HOM05D007804 ORTHO05D009828 3.3e-09 66.2 64 57.8
TPR.G32605 Trifolium pratense HOM05D007804 ORTHO05D009828 5.7e-09 65.5 180 35.6
Sed0004613 Sechium edule HOM05D007804 ORTHO05D009828 9.7e-09 64.7 184 37.5
Sed0005835 Sechium edule HOM05D007804 ORTHO05D009828 9.7e-09 64.7 184 37.5
VMungo0464G0276 Vigna mungo HOM05D007804 ORTHO05D009828 9.7e-09 64.7 64 56.2
Aa31LG2G4650 Aethionema arabicum HOM05D007804 ORTHO05D009828 1.3e-08 64.3 198 28.8
Thhalv10004896m.g Eutrema salsugineum HOM05D007804 ORTHO05D009828 1.3e-08 64.3 193 32.6
Actinidia02723 Actinidia chinensis HOM05D007804 ORTHO05D009828 6.3e-08 62.0 172 35.5
CARHR292560 Cardamine hirsuta HOM05D007804 ORTHO05D009828 6.3e-08 62.0 190 32.6
Sopen02g032190 Solanum pennellii HOM05D007804 ORTHO05D009828 1.4e-07 60.8 189 28.6
BcaB07g30130 Brassica carinata HOM05D007804 ORTHO05D009828 1.8e-07 60.5 172 33.1
THA.LOC104805425 Tarenaya hassleriana HOM05D007804 ORTHO05D009828 1.8e-07 60.5 206 38.3
BcaC03g17515 Brassica carinata HOM05D007804 ORTHO05D009828 3.1e-07 59.7 175 33.7
C02p54770 Brassica napus HOM05D007804 ORTHO05D009828 3.1e-07 59.7 175 33.7
BolC2t11538H Brassica oleracea HOM05D007804 ORTHO05D009828 3.1e-07 59.7 175 33.7
Carub.0005s0691 Capsella rubella HOM05D007804 ORTHO05D009828 4.1e-07 59.3 168 33.3
Lalb_Chr21g0319161 Lupinus albus HOM05D007804 ORTHO05D009828 4.1e-07 59.3 60 55.0
BcaC06g30917 Brassica carinata HOM05D007804 ORTHO05D009828 6.9e-07 58.5 168 32.7
A06p40550 Brassica napus HOM05D007804 ORTHO05D009828 9.0e-07 58.2 174 33.3
C07p37470 Brassica napus HOM05D000068 ORTHO05D009828 9.0e-07 58.2 174 33.3
BolC7t44259H Brassica oleracea HOM05D000068 ORTHO05D009828 9.0e-07 58.2 174 33.3
BraA06t26974Z Brassica rapa HOM05D007804 ORTHO05D009828 9.0e-07 58.2 174 33.3
DCAR_011178 Daucus carota HOM05D007804 ORTHO05D009828 1.2e-06 57.8 56 51.8
AL5G18030 Arabidopsis lyrata HOM05D007804 ORTHO05D009828 1.5e-06 57.4 186 32.3
Lalb_Chr02g0159931 Lupinus albus HOM05D007804 ORTHO05D009828 2.0e-06 57.0 73 52.1
Sp2g17190 Schrenkiella parvula HOM05D007804 ORTHO05D009828 2.0e-06 57.0 192 31.8
Rhsim08G0063700 Rhododendron simsii HOM05D007804 ORTHO05D009828 2.6e-06 56.6 180 30.6
Peaxi162Scf00129g00628 Petunia axillaris HOM05D007804 ORTHO05D009828 3.4e-06 56.2 175 28.0
PGSC0003DMG402001401 Solanum tuberosum HOM05D007804 ORTHO05D009828 3.4e-06 56.2 61 52.5
TWI36G0430 Tripterygium wilfordii HOM05D007804 ORTHO05D009828 4.5e-06 55.8 174 34.5
A02p35930 Brassica napus HOM05D007804 ORTHO05D009828 5.9e-06 55.5 172 38.4
BraA02t08592Z Brassica rapa HOM05D007804 ORTHO05D009828 5.9e-06 55.5 172 39.5
Migut.K01348 Erythranthe guttata HOM05D007804 ORTHO05D009828 5.9e-06 55.5 171 28.7
Solyc02g087440.4 Solanum lycopersicum HOM05D007804 ORTHO05D009828 5.9e-06 55.5 63 50.8
Lsat_1_v5_gn_4_180340 Lactuca sativa HOM05D007804 ORTHO05D009828 1.0e-05 54.7 51 49.0


User provided reference genes

Program Settings