Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.2465 Acer truncatum HOM05D006434 ORTHO05D008069 3.8e-185 651.4 326 100.0
Ciclev10012231m.g Citrus clementina HOM05D006434 ORTHO05D008069 2.0e-138 496.1 323 78.3
Dinv35002 Davidia involucrata HOM05D006434 ORTHO05D008069 3.1e-131 472.2 329 74.2
TAR629G3263 Trochodendron aralioides HOM05D006434 ORTHO05D008069 7.2e-128 461.1 322 71.4
Cfa007492 Carpinus fangiana HOM05D006434 ORTHO05D008069 9.4e-128 460.7 326 72.1
Potri.001G349800 Populus trichocarpa HOM05D006434 ORTHO05D008069 1.4e-126 456.8 320 72.5
COL.COLO4_36989 Corchorus olitorius HOM05D006434 ORTHO05D008069 2.3e-126 456.1 323 70.9
Duzib264G0249 Durio zibethinus HOM05D006434 ORTHO05D008069 9.8e-125 450.7 333 70.0
CSS0004781 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.7e-124 449.9 289 76.8
GSVIVG01032566001 Vitis vinifera HOM05D006434 ORTHO05D008069 1.4e-123 446.8 326 70.2
CSS0040499 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.8e-123 446.4 300 73.7
Actinidia06053 Actinidia chinensis HOM05D006434 ORTHO05D008069 2.7e-122 442.6 320 70.3
vmacro05779 Vaccinium macrocarpon HOM05D006434 ORTHO05D008069 5.9e-122 441.4 282 75.9
Sabra16G0229200 Salix brachista HOM05D006434 ORTHO05D008069 2.9e-121 439.1 318 70.8
TWI56G0494 Tripterygium wilfordii HOM05D006434 ORTHO05D008069 5.0e-121 438.3 314 70.7
PGR142G2438 Punica granatum HOM05D006434 ORTHO05D008069 8.6e-121 437.6 313 69.3
Thecc.04G069300 Theobroma cacao HOM05D006434 ORTHO05D008069 8.6e-121 437.6 333 69.1
CANSAT64G2331 Cannabis sativa HOM05D006434 ORTHO05D008069 1.9e-120 436.4 320 70.6
Rhsim10G0029400 Rhododendron simsii HOM05D006434 ORTHO05D008069 2.5e-120 436.0 328 69.2
Gohir.A07G216800 Gossypium hirsutum HOM05D006434 ORTHO05D008069 9.5e-120 434.1 327 69.4
Gorai.001G257900 Gossypium raimondii HOM05D006434 ORTHO05D008069 2.1e-119 433.0 327 69.4
Gohir.D07G223600 Gossypium hirsutum HOM05D006434 ORTHO05D008069 1.0e-118 430.6 327 69.1
Manes.15G178000 Manihot esculenta HOM05D006434 ORTHO05D008069 1.0e-118 430.6 319 69.6
Nn1g08819 Nelumbo nucifera HOM05D006434 ORTHO05D008069 1.4e-118 430.3 290 71.7
Hma1.2p1_0136F.1_g062090 Hydrangea macrophylla HOM05D006434 ORTHO05D008069 5.2e-118 428.3 268 79.1
CAN.G1128.11 Capsicum annuum HOM05D006434 ORTHO05D008069 6.8e-118 427.9 318 70.4
CsaV3_5G037720 Cucumis sativus L. HOM05D006434 ORTHO05D008069 1.5e-117 426.8 319 69.3
Solyc02g067540.3 Solanum lycopersicum HOM05D006434 ORTHO05D008069 1.5e-117 426.8 280 74.6
Sopen02g016670 Solanum pennellii HOM05D006434 ORTHO05D008069 1.5e-117 426.8 280 74.6
PGSC0003DMG400006900 Solanum tuberosum HOM05D006434 ORTHO05D008069 2.6e-117 426.0 280 74.6
Aqoxy3G00846 Aquilegia oxysepala HOM05D006434 ORTHO05D008069 5.7e-117 424.9 316 69.6
QL02p079411 Quercus lobata HOM05D006434 ORTHO05D008069 7.5e-117 424.5 315 69.8
MD09G1042700 Malus domestica HOM05D006434 ORTHO05D008069 4.9e-116 421.8 319 69.0
Eucgr.I01896 Eucalyptus grandis HOM05D006434 ORTHO05D008069 2.4e-115 419.5 277 72.9
RcHm_v2.0_Chr2g0169691 Rosa chinensis HOM05D006434 ORTHO05D008069 3.1e-115 419.1 327 68.2
Sed0011674 Sechium edule HOM05D006434 ORTHO05D008069 4.1e-115 418.7 323 66.3
MELO3C021484.2 Cucumis melo HOM05D006434 ORTHO05D008069 9.2e-115 417.5 318 68.6
Nitab4.5_0001727g0150 Nicotiana tabacum HOM05D006434 ORTHO05D008069 9.2e-115 417.5 280 73.2
PSO161G0076 Papaver somniferum HOM05D006434 ORTHO05D008069 2.7e-114 416.0 281 71.9
PSO478G2838 Papaver somniferum HOM05D006434 ORTHO05D008069 3.8e-113 412.1 329 64.7
FvH4_6g49670 Fragaria vesca HOM05D006434 ORTHO05D008069 2.5e-112 409.5 324 66.0
FAN14G5872 Fragaria x ananassa HOM05D006434 ORTHO05D008069 3.3e-112 409.1 324 66.0
Cc07_g02850 Coffea canephora HOM05D006434 ORTHO05D008069 2.1e-111 406.4 316 66.8
FAN02G4063 Fragaria x ananassa HOM05D006434 ORTHO05D008069 2.8e-111 406.0 324 65.7
FAN05G1688 Fragaria x ananassa HOM05D006434 ORTHO05D008069 1.8e-110 403.3 320 65.6
CiPaw.03G032300 Carya illinoinensis HOM05D006434 ORTHO05D008069 1.5e-109 400.2 291 72.2
Phvul.004G023900 Phaseolus vulgaris HOM05D006434 ORTHO05D008069 3.7e-108 395.6 316 67.4
ATR0665G567 Amborella trichopoda HOM05D006434 ORTHO05D008069 6.4e-108 394.8 307 65.5
Lj2g0012157 Lotus japonicus HOM05D006434 ORTHO05D008069 1.8e-107 393.3 320 66.2
Sc10g0004040 Simmondsia chinensis HOM05D006434 ORTHO05D008069 3.2e-107 392.5 275 72.0
Oeu022866.3 Olea europaea HOM05D006434 ORTHO05D008069 5.4e-107 391.7 363 59.2
Peaxi162Scf00059g00128 Petunia axillaris HOM05D006434 ORTHO05D008069 5.4e-107 391.7 309 65.7
AUR62018326 Chenopodium quinoa HOM05D006434 ORTHO05D008069 7.0e-107 391.3 319 63.0
Lsat_1_v5_gn_4_180280 Lactuca sativa HOM05D006434 ORTHO05D008069 1.2e-106 390.6 290 70.0
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 4.6e-106 388.7 273 72.2
SGA_v2.0_scaffold205G41750 Striga asiatica HOM05D006434 ORTHO05D008069 4.6e-106 388.7 311 64.3
Carub.0005s0699 Capsella rubella HOM05D006434 ORTHO05D008069 6.0e-106 388.3 317 66.6
DCAR_006717 Daucus carota HOM05D006434 ORTHO05D008069 2.3e-105 386.3 233 79.4
Glyma.13G066900 Glycine max HOM05D006434 ORTHO05D008069 8.6e-105 384.4 308 65.9
Migut.H00876 Erythranthe guttata HOM05D006434 ORTHO05D008069 1.9e-104 383.3 312 65.4
Thhalv10004634m.g Eutrema salsugineum HOM05D006434 ORTHO05D008069 1.9e-104 383.3 322 64.0
HanXRQChr15g0488521 Helianthus annuus HOM05D006434 ORTHO05D008069 1.2e-103 380.6 257 73.5
THA.LOC104823923 Tarenaya hassleriana HOM05D006434 ORTHO05D008069 1.2e-103 380.6 323 61.9
Lalb_Chr21g0319131 Lupinus albus HOM05D006434 ORTHO05D008069 1.6e-103 380.2 323 64.1
Sp2g17230 Schrenkiella parvula HOM05D006434 ORTHO05D008069 1.6e-103 380.2 322 63.7
Medtr6g009400 Medicago truncatula HOM05D006434 ORTHO05D008069 3.6e-103 379.0 320 63.4
AL5G18090 Arabidopsis lyrata HOM05D006434 ORTHO05D008069 1.4e-102 377.1 316 64.9
BcaC06g33735 Brassica carinata HOM05D006434 ORTHO05D008069 1.4e-102 377.1 323 62.2
arahy.Tifrunner.gnm1.ann1.X2C98S Arachis hypogaea HOM05D006434 ORTHO05D008069 2.3e-102 376.3 321 63.2
MSTRG.23964 Avicennia marina HOM05D006434 ORTHO05D008069 3.1e-102 375.9 306 64.4
arahy.Tifrunner.gnm1.ann1.ICRE53 Arachis hypogaea HOM05D006434 ORTHO05D008069 6.8e-102 374.8 321 62.9
TPR.G32608 Trifolium pratense HOM05D006434 ORTHO05D008069 6.8e-102 374.8 322 63.4
A06p40510 Brassica napus HOM05D006434 ORTHO05D008069 1.2e-101 374.0 325 61.8
BraA06t26970Z Brassica rapa HOM05D006434 ORTHO05D008069 1.2e-101 374.0 325 61.8
C07p37520 Brassica napus HOM05D006434 ORTHO05D008069 2.0e-101 373.2 322 62.7
BolC7t44265H Brassica oleracea HOM05D006434 ORTHO05D008069 2.6e-101 372.9 320 62.5
CARHR292500 Cardamine hirsuta HOM05D006434 ORTHO05D008069 4.4e-101 372.1 320 63.1
AUR62030560 Chenopodium quinoa HOM05D006434 ORTHO05D008069 3.7e-100 369.0 330 59.4
Haze_14607 Corylus avellana HOM05D006434 ORTHO05D008069 4.9e-100 368.6 291 67.7
Aa31LG2G4610 Aethionema arabicum HOM05D006434 ORTHO05D008069 6.4e-100 368.2 286 68.9
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 6.4e-100 368.2 295 64.7
VMungo0464G0451 Vigna mungo HOM05D006434 ORTHO05D008069 1.9e-99 366.7 318 62.9
CDE02G1577 Ceratophyllum demersum HOM05D006434 ORTHO05D008069 2.4e-99 366.3 305 59.0
EL10Ac2g02902 Beta vulgaris HOM05D006434 ORTHO05D008069 3.2e-99 365.9 350 58.3
FAN09G0258 Fragaria x ananassa HOM05D006434 ORTHO05D008069 5.4e-99 365.2 305 63.9
Psat1g076480 Pisum sativum HOM05D006434 ORTHO05D008069 7.3e-96 354.8 279 65.6
CSS0001127 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.8e-95 352.8 229 73.8
unitig_744.g24344 Utricularia gibba HOM05D006434 ORTHO05D008069 6.8e-94 348.2 271 65.7
CSS0033350 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.7e-92 343.6 221 75.1
Glyma.19G017500 Glycine max HOM05D006434 ORTHO05D008069 1.4e-91 340.5 197 82.2
Prupe.3G275100 Prunus persica HOM05D006434 ORTHO05D008069 2.4e-91 339.7 273 66.7
HPP92_023566 Vanilla planifolia HOM05D006434 ORTHO05D008069 5.4e-91 338.6 265 62.6
Os03g0736400 Oryza sativa ssp. japonica HOM05D006434 ORTHO05D008069 2.7e-90 336.3 318 56.3
Cpa.g.sc14.62 Carica papaya HOM05D006434 ORTHO05D008069 3.8e-84 315.8 177 85.9
AT3G28460 Arabidopsis thaliana HOM05D006434 ORTHO05D008069 6.0e-82 308.5 270 64.4
Nitab4.5_0003431g0070 Nicotiana tabacum HOM05D006434 ORTHO05D008069 1.3e-81 307.4 178 79.2
SalBow1G5247 Salvia bowleyana HOM05D006434 ORTHO05D008069 1.1e-78 297.7 318 52.2
Ca_04243_v3 Cicer arietinum L. HOM05D006434 ORTHO05D008069 1.4e-78 297.4 225 67.6
Zm00001eb215320 Zea mays HOM05D006434 ORTHO05D008069 2.4e-75 286.6 262 57.6
CSS0043817 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.7e-73 280.4 187 72.2
Lj7A404T37 Lonicera japonica HOM05D006434 ORTHO05D008069 4.8e-71 272.3 239 63.2
AagrBONN_evm.TU.Sc2ySwM_344.3988 Anthoceros agrestis HOM05D006434 ORTHO05D008069 4.6e-66 255.8 196 62.2
Pp3c7_630 Physcomitrium patens HOM05D006434 ORTHO05D008069 3.0e-65 253.1 230 56.1
SMO171G0075 Selaginella moellendorffii HOM05D006434 ORTHO05D008069 4.3e-64 249.2 202 57.9
MBI01_g13068_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 1.1e-62 244.6 206 63.1
Hund13291 Selenicereus undatus HOM05D006434 ORTHO05D008069 7.1e-59 231.9 238 56.3
Mapoly0140s0031 Marchantia polymorpha HOM05D006434 ORTHO05D008069 3.0e-57 226.5 210 54.8
CBR_g31858 Chara braunii HOM05D006434 ORTHO05D008069 8.7e-49 198.4 250 44.8
SEGI_25544 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 1.1e-43 181.4 242 44.2
PRCOL_00006620 Prasinoderma coloniale HOM05D006434 ORTHO05D008069 3.9e-41 172.9 207 43.5
SEGI_38692 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 1.9e-40 170.6 125 63.2
Cre13.g566300 Chlamydomonas reinhardtii HOM05D006434 ORTHO05D008069 4.5e-37 159.5 237 37.1
MBI01_g13070_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 4.2e-35 152.9 92 76.1
Solyc01g057060.1 Solanum lycopersicum HOM05D006434 ORTHO05D008069 1.4e-30 137.9 96 69.8
MCO03G139 Micromonas commoda HOM05D006434 ORTHO05D008069 5.0e-28 129.4 119 49.6
Sopen01g021310 Solanum pennellii HOM05D006434 ORTHO05D008069 5.0e-28 129.4 87 72.4
TAR371G0222 Trochodendron aralioides HOM05D006434 ORTHO05D008069 5.7e-24 115.9 75 78.7
MD17G1044100 Malus domestica HOM05D006434 ORTHO05D008069 2.2e-23 114.0 60 90.0
Lj7A404T38 Lonicera japonica HOM05D006434 ORTHO05D008069 1.0e-09 68.6 146 31.5
Cpa.g.sc14.61 Carica papaya HOM05D006434 ORTHO05D008069 4.0e-09 66.6 120 43.3
Lsat_1_v5_gn_7_34121 Lactuca sativa HOM05D006434 ORTHO05D008069 1.5e-08 64.7 37 78.4


User provided reference genes

Program Settings