Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.2408 Acer truncatum HOM05D006160 ORTHO05D007674 1.1e-82 310.1 169 100.0
Potri.005G122800 Populus trichocarpa HOM05D006160 ORTHO05D007674 1.4e-37 160.2 171 53.8
Sabra05G0101000 Salix brachista HOM05D006160 ORTHO05D007674 8.9e-37 157.5 171 52.6
MELO3C009921.2 Cucumis melo HOM05D006160 ORTHO05D007674 7.5e-36 154.5 168 54.8
CsaV3_3G042010 Cucumis sativus L. HOM05D006160 ORTHO05D007674 9.8e-36 154.1 168 54.8
ClCG10G014570 Citrullus lanatus HOM05D006160 ORTHO05D007674 1.3e-35 153.7 169 53.3
TWI56G1459 Tripterygium wilfordii HOM05D006160 ORTHO05D007674 8.3e-35 151.0 169 53.8
Ciclev10013666m.g Citrus clementina HOM05D006160 ORTHO05D007674 3.1e-34 149.1 169 55.0
Sed0020076 Sechium edule HOM05D006160 ORTHO05D007674 5.4e-34 148.3 169 52.7
RcHm_v2.0_Chr2g0170271 Rosa chinensis HOM05D006160 ORTHO05D007674 4.5e-33 145.2 169 53.8
Cpa.g.c29962.2 Carica papaya HOM05D006160 ORTHO05D007674 7.8e-33 144.4 168 50.0
PGSC0003DMG400001293 Solanum tuberosum HOM05D006160 ORTHO05D007674 7.8e-33 144.4 168 48.2
CiPaw.03G033700 Carya illinoinensis HOM05D006160 ORTHO05D007674 1.3e-32 143.7 168 50.6
QL02p078501 Quercus lobata HOM05D006160 ORTHO05D007674 2.9e-32 142.5 168 53.0
Sopen02g032010 Solanum pennellii HOM05D006160 ORTHO05D007674 8.6e-32 141.0 170 48.2
Solyc02g087260.1 Solanum lycopersicum HOM05D006160 ORTHO05D007674 1.5e-31 140.2 168 48.8
CiPaw.04G022200 Carya illinoinensis HOM05D006160 ORTHO05D007674 1.9e-31 139.8 171 50.9
Prupe.3G278200 Prunus persica HOM05D006160 ORTHO05D007674 3.3e-31 139.0 169 50.3
GSVIVG01032544001 Vitis vinifera HOM05D006160 ORTHO05D007674 7.3e-31 137.9 168 53.0
Haze_14622 Corylus avellana HOM05D006160 ORTHO05D007674 9.5e-31 137.5 171 50.9
CSS0008843 Camellia sinensis var. sinensis HOM05D006160 ORTHO05D007674 1.2e-30 137.1 168 48.2
COL.COLO4_34360 Corchorus olitorius HOM05D006160 ORTHO05D007674 1.2e-30 137.1 171 49.7
Cfa007476 Carpinus fangiana HOM05D006160 ORTHO05D007674 2.1e-30 136.3 168 50.0
Thecc.04G002600 Theobroma cacao HOM05D006160 ORTHO05D007674 3.6e-30 135.6 168 50.6
Thecc.04G002700 Theobroma cacao HOM05D006160 ORTHO05D007674 3.6e-30 135.6 168 50.6
CSS0046343 Camellia sinensis var. sinensis HOM05D006160 ORTHO05D007674 8.0e-30 134.4 168 47.6
Cc07_g02680 Coffea canephora HOM05D006160 ORTHO05D007674 1.4e-29 133.7 174 47.7
Duzib264G1011 Durio zibethinus HOM05D006160 ORTHO05D007674 1.4e-29 133.7 170 51.8
CAN.G206.64 Capsicum annuum HOM05D006160 ORTHO05D007674 1.8e-29 133.3 169 47.3
MD17G1040800 Malus domestica HOM05D006160 ORTHO05D007674 3.1e-29 132.5 168 50.0
Rhsim08G0057500 Rhododendron simsii HOM05D006160 ORTHO05D007674 3.1e-29 132.5 170 47.6
Rhsim08G0061700 Rhododendron simsii HOM05D006160 ORTHO05D007674 3.1e-29 132.5 170 47.6
TAR622G0926 Trochodendron aralioides HOM05D006160 ORTHO05D007674 3.1e-29 132.5 168 47.0
Manes.11G038900 Manihot esculenta HOM05D006160 ORTHO05D007674 5.2e-29 131.7 168 47.0
PGR083G2234 Punica granatum HOM05D006160 ORTHO05D007674 6.8e-29 131.3 168 50.0
Lj7P407T47 Lonicera japonica HOM05D006160 ORTHO05D007674 2.0e-28 129.8 168 48.8
THA.LOC104802410 Tarenaya hassleriana HOM05D006160 ORTHO05D007674 2.0e-28 129.8 172 50.0
TAR629G0883 Trochodendron aralioides HOM05D006160 ORTHO05D007674 2.6e-28 129.4 168 48.2
FvH4_6g50020 Fragaria vesca HOM05D006160 ORTHO05D007674 9.8e-28 127.5 168 51.8
FAN09G3358 Fragaria x ananassa HOM05D006160 ORTHO05D007674 9.8e-28 127.5 168 51.8
FAN05G0598 Fragaria x ananassa HOM05D006160 ORTHO05D007674 4.9e-27 125.2 168 51.8
Gohir.A05G361800 Gossypium hirsutum HOM05D006160 ORTHO05D007674 4.9e-27 125.2 168 48.2
MD09G1040200 Malus domestica HOM05D006160 ORTHO05D007674 1.4e-26 123.6 169 49.7
Nitab4.5_0007185g0010 Nicotiana tabacum HOM05D006160 ORTHO05D007674 1.4e-26 123.6 168 42.9
Oeu050236.1 Olea europaea HOM05D006160 ORTHO05D007674 1.9e-26 123.2 169 48.5
Cc11_g06840 Coffea canephora HOM05D006160 ORTHO05D007674 2.4e-26 122.9 174 46.6
FAN14G4363 Fragaria x ananassa HOM05D006160 ORTHO05D007674 3.2e-26 122.5 168 50.6
CARHR075620 Cardamine hirsuta HOM05D006160 ORTHO05D007674 7.0e-26 121.3 173 43.9
BolC5t35143H Brassica oleracea HOM05D006160 ORTHO05D007674 9.2e-26 120.9 171 46.8
Sp3g00710 Schrenkiella parvula HOM05D006160 ORTHO05D007674 9.2e-26 120.9 173 42.8
BcaC05g30463 Brassica carinata HOM05D006160 ORTHO05D007674 1.2e-25 120.6 173 44.5
Thhalv10022440m.g Eutrema salsugineum HOM05D006160 ORTHO05D007674 1.6e-25 120.2 173 42.2
C09p75210 Brassica napus HOM05D006160 ORTHO05D007674 3.5e-25 119.0 171 46.2
A05p44620 Brassica napus HOM05D006160 ORTHO05D007674 6.0e-25 118.2 170 45.3
BraA05t23194Z Brassica rapa HOM05D006160 ORTHO05D007674 6.0e-25 118.2 170 45.3
Duzib147G1447 Durio zibethinus HOM05D006160 ORTHO05D007674 6.0e-25 118.2 168 45.8
AL3G10850 Arabidopsis lyrata HOM05D006160 ORTHO05D007674 1.0e-24 117.5 180 41.7
Gohir.D04G052600 Gossypium hirsutum HOM05D006160 ORTHO05D007674 1.3e-24 117.1 168 47.6
Gorai.012G058700 Gossypium raimondii HOM05D006160 ORTHO05D007674 1.3e-24 117.1 168 47.6
Carub.0003s0073 Capsella rubella HOM05D006160 ORTHO05D007674 5.0e-24 115.2 173 42.8
Aa31LG5G10480 Aethionema arabicum HOM05D006160 ORTHO05D007674 1.5e-23 113.6 173 41.0
Hma1.2p1_0849F.1_g228140 Hydrangea macrophylla HOM05D006160 ORTHO05D007674 1.5e-23 113.6 170 45.3
AT3G01360 Arabidopsis thaliana HOM05D006160 ORTHO05D007674 2.5e-23 112.8 170 42.4
AUR62022120 Chenopodium quinoa HOM05D006160 ORTHO05D007674 2.5e-23 112.8 168 39.9
DCAR_013983 Daucus carota HOM05D006160 ORTHO05D007674 4.3e-23 112.1 163 43.6
Migut.K01355 Erythranthe guttata HOM05D006160 ORTHO05D007674 4.3e-23 112.1 168 41.7
Actinidia33976 Actinidia chinensis HOM05D006160 ORTHO05D007674 5.6e-23 111.7 168 42.3
Nn3g17021 Nelumbo nucifera HOM05D006160 ORTHO05D007674 1.6e-22 110.2 168 45.2
MBI15_g14839_MAGBIO Magnolia biondii HOM05D006160 ORTHO05D007674 2.1e-22 109.8 168 44.0
Sc20g0002680 Simmondsia chinensis HOM05D006160 ORTHO05D007674 1.1e-21 107.5 168 41.1
MSTRG.15499 Avicennia marina HOM05D006160 ORTHO05D007674 1.4e-21 107.1 170 39.4
Nn4g22919 Nelumbo nucifera HOM05D006160 ORTHO05D007674 2.3e-21 106.3 168 44.0
Gohir.A01G199600 Gossypium hirsutum HOM05D006160 ORTHO05D007674 3.1e-21 105.9 122 50.8
Gohir.A02G134601 Gossypium hirsutum HOM05D006160 ORTHO05D007674 3.1e-21 105.9 122 50.8
Gohir.A03G007400 Gossypium hirsutum HOM05D006160 ORTHO05D007674 3.1e-21 105.9 122 50.8
Gohir.D09G171500 Gossypium hirsutum HOM05D006160 ORTHO05D007674 3.1e-21 105.9 122 50.8
Gorai.006G069300 Gossypium raimondii HOM05D006160 ORTHO05D007674 4.0e-21 105.5 122 50.8
Gohir.A07G181850 Gossypium hirsutum HOM05D006160 ORTHO05D007674 5.2e-21 105.1 122 50.0
Gohir.A06G128104 Gossypium hirsutum HOM05D006160 ORTHO05D007674 8.9e-21 104.4 122 50.0
Aqoxy3G03111 Aquilegia oxysepala HOM05D006160 ORTHO05D007674 1.2e-20 104.0 168 41.7
Gohir.A10G208350 Gossypium hirsutum HOM05D006160 ORTHO05D007674 1.5e-20 103.6 122 50.0
Gohir.A12G126333 Gossypium hirsutum HOM05D006160 ORTHO05D007674 3.4e-20 102.4 122 50.0
Gohir.D02G203256 Gossypium hirsutum HOM05D006160 ORTHO05D007674 3.4e-20 102.4 122 50.0
Lalb_Chr10g0093421 Lupinus albus HOM05D006160 ORTHO05D007674 3.4e-20 102.4 96 58.3
Eucgr.J02169 Eucalyptus grandis HOM05D006160 ORTHO05D007674 4.4e-20 102.1 168 41.1
SalBow1G6035 Salvia bowleyana HOM05D006160 ORTHO05D007674 4.4e-20 102.1 172 40.7
Gohir.D09G039200 Gossypium hirsutum HOM05D006160 ORTHO05D007674 9.8e-20 100.9 117 51.3
SGA_v2.0_scaffold224G42970 Striga asiatica HOM05D000629 ORTHO05D000576 1.7e-19 100.1 104 55.8
CDE04G3446 Ceratophyllum demersum HOM05D006160 ORTHO05D007674 4.9e-19 98.6 168 39.9
Gohir.D12G020250 Gossypium hirsutum HOM05D006160 ORTHO05D007674 2.4e-18 96.3 100 55.0
unitig_748.g8439 Utricularia gibba HOM05D006160 ORTHO05D007674 4.1e-18 95.5 168 38.7
PSO591G0049 Papaver somniferum HOM05D006160 ORTHO05D007674 9.2e-18 94.4 170 36.5
Glyma.19G103966 Glycine max HOM05D006160 ORTHO05D007674 2.7e-17 92.8 168 42.3
PSO832G1329 Papaver somniferum HOM05D006160 ORTHO05D007674 7.8e-17 91.3 168 35.7
ATR0021G006 Amborella trichopoda HOM05D006160 ORTHO05D007674 5.1e-16 88.6 168 35.1
Ca_27075_v3 Cicer arietinum L. HOM05D006160 ORTHO05D007674 5.1e-16 88.6 168 36.3
Medtr7g034135 Medicago truncatula HOM05D006160 ORTHO05D007674 5.1e-16 88.6 168 36.3
Lsat_1_v5_gn_0_16501 Lactuca sativa HOM05D006160 ORTHO05D007674 1.1e-15 87.4 167 33.5
TPR.G39149 Trifolium pratense HOM05D006160 ORTHO05D007674 1.9e-15 86.7 168 34.5
VMungo1383G0493 Vigna mungo HOM05D006160 ORTHO05D007674 4.3e-15 85.5 168 38.1
SEGI_35137 Sequoiadendron giganteum HOM05D006160 ORTHO05D007674 7.3e-15 84.7 168 31.5
Phvul.001G084200 Phaseolus vulgaris HOM05D006160 ORTHO05D007674 2.8e-14 82.8 168 36.9
unitig_32.g10741 Utricularia gibba HOM05D006160 ORTHO05D007674 6.8e-13 78.2 155 37.4
Psat3g172360 Pisum sativum HOM05D006160 ORTHO05D007674 8.9e-13 77.8 168 33.3
CDE07G1150 Ceratophyllum demersum HOM05D006160 ORTHO05D007674 2.6e-12 76.3 70 54.3
Gorai.001G255400 Gossypium raimondii HOM05D006160 ORTHO05D007674 3.7e-11 72.4 117 40.2
Cc11_g06740 Coffea canephora HOM05D006160 ORTHO05D007674 7.1e-10 68.2 121 43.0
Cc11_g06750 Coffea canephora HOM05D006160 ORTHO05D007674 4.6e-09 65.5 113 43.4
Dinv35018 Davidia involucrata HOM05D006160 ORTHO05D007674 1.0e-08 64.3 107 38.3
Mapoly0039s0012 Marchantia polymorpha HOM05D006160 ORTHO05D007674 6.6e-08 61.6 170 30.0
HPP92_025618 Vanilla planifolia HOM05D006160 ORTHO05D007674 2.5e-07 59.7 171 34.5
Gorai.006G069400 Gossypium raimondii HOM05D006160 ORTHO05D007674 5.6e-07 58.5 78 48.7
HanXRQChr17g0547171 Helianthus annuus HOM05D006160 ORTHO05D007674 2.1e-06 56.6 121 37.2
EL10Ac7g18003 Beta vulgaris HOM05D006160 ORTHO05D007674 6.2e-06 55.1 107 37.4


User provided reference genes

Program Settings