Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 0.0e+00 1667.5 887 100.0
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 0.0e+00 1306.6 898 79.4
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 0.0e+00 1235.7 896 76.5
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 0.0e+00 1228.4 898 75.3
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 0.0e+00 1219.1 897 74.4
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 0.0e+00 1214.1 900 74.2
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 0.0e+00 1198.7 900 73.2
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 0.0e+00 1192.2 898 72.9
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 0.0e+00 1186.4 902 73.2
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 0.0e+00 1175.2 894 73.9
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 0.0e+00 1150.2 902 70.7
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 0.0e+00 1143.3 905 71.4
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 0.0e+00 1127.9 906 69.0
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 0.0e+00 1125.9 906 68.8
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 0.0e+00 1115.5 899 70.3
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 0.0e+00 1114.0 903 68.5
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 0.0e+00 1113.6 903 68.3
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 0.0e+00 1113.6 899 70.3
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 0.0e+00 1113.2 902 70.6
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 0.0e+00 1109.7 863 72.7
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 0.0e+00 1109.0 902 69.1
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 0.0e+00 1104.7 902 67.2
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 0.0e+00 1095.5 902 70.3
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 0.0e+00 1076.6 890 66.4
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 5.1e-309 1064.3 901 66.3
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 6.6e-309 1063.9 902 66.7
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 3.3e-308 1061.6 899 69.5
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 1.2e-307 1059.7 903 67.4
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 2.6e-305 1052.0 898 66.4
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 7.6e-305 1050.4 899 68.1
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 9.9e-305 1050.0 910 63.6
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 6.4e-304 1047.3 901 65.9
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 1.1e-303 1046.6 905 64.9
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 3.2e-303 1045.0 860 69.5
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 1.2e-302 1043.1 900 67.0
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.0e-301 1040.0 889 67.6
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 1.7e-301 1039.3 899 67.7
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 2.3e-301 1038.9 909 65.7
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 3.0e-301 1038.5 891 67.9
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 1.1e-300 1036.6 901 67.8
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 3.3e-300 1035.0 889 67.3
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 5.6e-300 1034.2 909 65.3
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 9.6e-300 1033.5 898 67.7
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 9.6e-300 1033.5 889 67.3
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 5.3e-298 1027.7 903 65.4
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 1.5e-297 1026.2 801 73.7
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 9.9e-297 1023.5 901 67.0
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 1.1e-295 1020.0 906 63.7
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.4e-295 1019.6 909 64.2
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 1.9e-295 1019.2 915 64.5
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 4.2e-295 1018.1 902 65.2
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 5.4e-295 1017.7 906 63.6
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 9.3e-295 1016.9 915 64.5
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 2.1e-294 1015.8 892 66.5
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 1.8e-293 1012.7 795 73.0
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 1.8e-293 1012.7 887 64.0
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 5.1e-293 1011.1 795 72.8
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 1.1e-292 1010.0 901 65.1
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 2.5e-292 1008.8 914 65.2
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 2.8e-291 1005.4 914 65.0
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 2.0e-289 999.2 897 64.9
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 1.4e-287 993.0 907 64.7
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 1.4e-287 993.0 916 63.8
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 1.2e-286 989.9 915 63.5
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 1.1e-284 983.4 885 64.7
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 1.5e-284 983.0 896 64.2
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 1.6e-283 979.5 894 64.2
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 6.2e-283 977.6 867 66.6
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 1.8e-282 976.1 900 65.0
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 6.5e-280 967.6 885 62.4
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 2.1e-278 962.6 887 61.6
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 1.3e-277 959.9 895 62.8
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 1.8e-277 959.5 881 63.0
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 6.7e-277 957.6 776 69.7
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 1.4e-274 949.9 894 61.9
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 2.2e-272 942.6 899 62.2
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 6.5e-272 941.0 901 59.3
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 1.0e-269 933.7 861 64.7
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 5.1e-269 931.4 859 65.2
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 1.8e-266 922.9 914 60.5
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 3.1e-266 922.2 906 62.3
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 1.5e-265 919.8 903 63.0
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 2.1e-262 909.4 862 62.9
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 3.9e-261 905.2 895 58.9
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 6.3e-259 897.9 899 60.1
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 1.4e-258 896.7 896 59.3
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 9.7e-252 874.0 909 57.1
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 2.6e-249 865.9 895 59.7
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 3.8e-248 862.1 900 59.3
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 3.2e-247 859.0 772 62.7
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 7.2e-247 857.8 900 60.7
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 4.7e-246 855.1 868 60.0
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.4e-245 853.6 898 57.7
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 1.8e-242 843.2 881 58.1
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 5.3e-242 841.6 904 59.0
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 1.7e-240 836.6 903 60.2
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 3.2e-239 832.4 880 59.4
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 4.7e-238 828.6 896 56.6
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 1.4e-237 827.0 905 55.0
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 2.6e-236 822.8 880 59.7
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 9.8e-236 820.8 880 59.5
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 1.7e-235 820.1 890 57.8
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 1.6e-233 813.5 892 57.7
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 2.5e-231 806.2 863 59.7
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 2.8e-230 802.7 896 56.9
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.2e-228 797.3 861 60.4
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 3.4e-228 795.8 893 54.4
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 1.6e-225 786.9 856 56.1
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 5.9e-225 785.0 861 56.9
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 3.9e-224 782.3 906 55.1
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 2.3e-221 773.1 874 56.9
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 5.2e-221 771.9 896 54.0
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 1.2e-220 770.8 894 54.7
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 2.6e-220 769.6 730 64.4
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 3.4e-220 769.2 841 58.4
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 4.4e-220 768.8 899 52.9
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 7.8e-217 758.1 837 53.6
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 1.7e-216 756.9 841 56.0
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 7.3e-215 751.5 876 55.9
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 4.1e-210 735.7 877 52.6
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 7.1e-210 734.9 860 56.4
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 1.8e-205 720.3 874 54.0
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 1.3e-203 714.1 841 54.2
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 1.7e-203 713.8 876 53.4
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 2.9e-203 713.0 878 53.5
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 1.4e-202 710.7 876 53.1
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 1.9e-202 710.3 751 58.3
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 2.4e-202 709.9 864 53.8
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 1.2e-201 707.6 842 52.6
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 1.0e-200 704.5 862 53.6
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 1.3e-200 704.1 905 53.0
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 5.6e-199 698.7 905 53.1
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 2.1e-198 696.8 758 58.0
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 2.8e-198 696.4 803 57.9
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 2.6e-196 689.9 893 52.4
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 3.4e-196 689.5 890 52.0
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 8.4e-195 684.9 912 51.8
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 5.4e-194 682.2 911 49.5
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 1.3e-187 661.0 927 48.9
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 2.9e-187 659.8 914 51.0
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 3.8e-187 659.4 917 50.9
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.4e-186 657.5 903 48.5
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 2.5e-183 646.7 871 51.5
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 1.7e-179 634.0 773 52.5
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 2.3e-168 597.0 841 50.4
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 1.1e-162 578.2 838 47.7
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 1.4e-162 577.8 882 49.0
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 5.5e-154 549.3 739 51.6
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 3.8e-147 526.6 898 43.9
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 3.2e-146 523.5 883 45.4
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 8.0e-137 492.3 454 64.1
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 5.2e-136 489.6 641 55.5
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 3.5e-124 450.3 820 43.5
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 3.5e-124 450.3 925 41.2
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 1.7e-123 448.0 909 41.7
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 2.5e-122 444.1 915 40.0
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 4.7e-121 439.9 930 40.4
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 9.2e-117 425.6 922 40.8
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 2.7e-116 424.1 923 41.3
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 1.2e-111 408.7 404 62.4
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 2.9e-110 404.1 898 38.3
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 3.3e-106 390.6 905 37.6
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 1.4e-96 358.6 313 59.7
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 6.6e-91 339.7 884 36.8
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.3e-86 325.5 1003 34.6
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 2.3e-83 314.7 940 34.0
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 3.5e-68 264.2 347 45.0
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 7.9e-68 263.1 358 45.5
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 3.6e-65 254.2 295 49.8
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 4.5e-63 247.3 358 43.9
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 4.9e-62 243.8 296 49.7
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 8.4e-62 243.0 421 44.4
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 2.1e-60 238.4 498 37.1
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 4.6e-60 237.3 262 70.6
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 2.3e-59 235.0 329 46.2
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 1.5e-50 205.7 232 53.0
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 5.7e-50 203.8 298 40.6
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 2.1e-49 201.8 333 39.6
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 3.2e-45 188.0 176 55.1
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 3.9e-43 181.0 97 94.8
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 2.5e-42 178.3 801 26.6
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.9e-37 162.2 182 50.5
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 2.8e-17 95.1 145 44.1
SEGI_26240 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 3.2e-13 81.6 325 27.4
unitig_27.g24881 Utricularia gibba HOM05D003671 ORTHO05D004285 1.0e-06 60.1 40 65.0
MBI03_g10317_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D243544 1.3e-06 59.7 261 25.7


User provided reference genes

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