Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.2129 Acer truncatum HOM05D006079 ORTHO05D008156 2.2e-257 891.7 431 100.0
Manes.08G086700 Manihot esculenta HOM05D006079 ORTHO05D008156 1.2e-202 709.9 431 78.2
CSS0045639 Camellia sinensis var. sinensis HOM05D006079 ORTHO05D008156 4.3e-197 691.4 432 77.3
CiPaw.10G153700 Carya illinoinensis HOM05D006079 ORTHO05D008156 1.8e-195 686.0 432 76.6
Duzib093G0682 Durio zibethinus HOM05D006079 ORTHO05D008156 1.2e-194 683.3 430 76.5
Cfa017268 Carpinus fangiana HOM05D006079 ORTHO05D008156 5.9e-194 681.0 433 76.2
Gorai.012G110900 Gossypium raimondii HOM05D006079 ORTHO05D008156 1.0e-193 680.2 432 76.6
QL07p036333 Quercus lobata HOM05D006079 ORTHO05D008156 1.0e-193 680.2 435 77.2
Gohir.A04G087500 Gossypium hirsutum HOM05D006079 ORTHO05D008156 3.8e-193 678.3 432 76.9
Haze_20934 Corylus avellana HOM05D006079 ORTHO05D008156 5.0e-193 677.9 437 75.5
Actinidia13795 Actinidia chinensis HOM05D006079 ORTHO05D008156 7.2e-192 674.1 432 76.4
PGR031G3170 Punica granatum HOM05D006079 ORTHO05D008156 2.7e-191 672.2 438 76.3
COL.COLO4_14632 Corchorus olitorius HOM05D006079 ORTHO05D008156 1.0e-190 670.2 432 76.4
Nn2g13580 Nelumbo nucifera HOM05D006079 ORTHO05D008156 5.1e-190 667.9 431 75.2
Dinv35521 Davidia involucrata HOM05D006079 ORTHO05D008156 1.1e-189 666.8 434 74.9
Gohir.D04G127900 Gossypium hirsutum HOM05D006079 ORTHO05D008156 2.6e-189 665.6 432 75.5
Ciclev10011790m.g Citrus clementina HOM05D006079 ORTHO05D008156 4.4e-189 664.8 436 76.1
CANSAT35G1087 Cannabis sativa HOM05D006079 ORTHO05D008156 1.3e-188 663.3 431 74.7
GSVIVG01034026001 Vitis vinifera HOM05D006079 ORTHO05D008156 1.7e-188 662.9 431 74.7
Thecc.05G024000 Theobroma cacao HOM05D006079 ORTHO05D008156 2.2e-188 662.5 432 75.5
Prupe.6G269000 Prunus persica HOM05D006079 ORTHO05D008156 6.3e-188 661.0 431 75.4
Psat3g135200 Pisum sativum HOM05D006079 ORTHO05D008156 8.2e-188 660.6 432 73.4
Potri.006G095400 Populus trichocarpa HOM05D006079 ORTHO05D008156 1.1e-187 660.2 433 76.4
Sabra06G0073200 Salix brachista HOM05D006079 ORTHO05D008156 1.4e-187 659.8 433 76.0
TWI77G0608 Tripterygium wilfordii HOM05D006079 ORTHO05D008156 1.8e-187 659.4 431 75.6
Duzib128G0993 Durio zibethinus HOM05D006079 ORTHO05D008156 5.3e-187 657.9 438 72.8
Glyma.07G143100 Glycine max HOM05D006079 ORTHO05D008156 3.5e-186 655.2 434 74.2
Cpa.g.sc56.97 Carica papaya HOM05D006079 ORTHO05D008156 5.0e-185 651.4 424 75.7
FAN02G2404 Fragaria x ananassa HOM05D006079 ORTHO05D008156 9.4e-184 647.1 431 71.9
Ca_09158_v3 Cicer arietinum L. HOM05D006079 ORTHO05D008156 1.2e-183 646.7 431 72.4
Lalb_Chr01g0022871 Lupinus albus HOM05D006079 ORTHO05D008156 4.7e-183 644.8 431 73.3
FAN05G0163 Fragaria x ananassa HOM05D006079 ORTHO05D008156 3.0e-182 642.1 431 71.5
FAN14G2872 Fragaria x ananassa HOM05D006079 ORTHO05D008156 3.9e-182 641.7 431 71.7
FvH4_6g12250 Fragaria vesca HOM05D006079 ORTHO05D008156 5.2e-182 641.3 431 71.5
MD12G1158600 Malus domestica HOM05D006079 ORTHO05D008156 5.2e-182 641.3 432 73.4
Eucgr.B02761 Eucalyptus grandis HOM05D006079 ORTHO05D008156 1.1e-181 640.2 431 72.9
arahy.Tifrunner.gnm1.ann1.3KU04F Arachis hypogaea HOM05D006079 ORTHO05D008156 5.7e-181 637.9 432 73.4
Lj1g0026135 Lotus japonicus HOM05D006079 ORTHO05D008156 5.7e-181 637.9 435 72.2
Phvul.008G111400 Phaseolus vulgaris HOM05D006079 ORTHO05D008156 7.4e-181 637.5 431 72.6
FAN09G0680 Fragaria x ananassa HOM05D006079 ORTHO05D008156 2.8e-180 635.6 431 71.5
RcHm_v2.0_Chr3g0464051 Rosa chinensis HOM05D006079 ORTHO05D008156 3.1e-179 632.1 432 71.5
PSO585G0039 Papaver somniferum HOM05D006079 ORTHO05D008156 4.1e-179 631.7 431 71.5
Nitab4.5_0000008g0510 Nicotiana tabacum HOM05D006079 ORTHO05D008156 4.5e-178 628.2 436 70.6
Medtr7g066250 Medicago truncatula HOM05D006079 ORTHO05D008156 5.9e-178 627.9 434 71.2
Nitab4.5_0007539g0010 Nicotiana tabacum HOM05D006079 ORTHO05D008156 1.0e-177 627.1 437 70.0
PSO384G3626 Papaver somniferum HOM05D006079 ORTHO05D008156 1.7e-177 626.3 431 71.0
Peaxi162Scf01352g00015 Petunia axillaris HOM05D006079 ORTHO05D008156 2.2e-177 625.9 428 69.9
Lj2A83T75 Lonicera japonica HOM05D006079 ORTHO05D008156 1.6e-175 619.8 409 74.8
PGSC0003DMG400020333 Solanum tuberosum HOM05D006079 ORTHO05D008156 1.6e-175 619.8 438 69.6
arahy.Tifrunner.gnm1.ann1.GZPT0A Arachis hypogaea HOM05D006079 ORTHO05D008156 2.7e-175 619.0 456 68.4
Solyc09g011880.3 Solanum lycopersicum HOM05D006079 ORTHO05D008156 2.7e-175 619.0 436 69.7
Sopen09g006700 Solanum pennellii HOM05D006079 ORTHO05D008156 3.6e-175 618.6 436 69.5
ECA236G0495 Erigeron canadensis HOM05D006079 ORTHO05D008156 8.0e-175 617.5 447 68.0
Sc25g0003370 Simmondsia chinensis HOM05D006079 ORTHO05D008156 1.0e-174 617.1 432 70.4
MSTRG.5605 Avicennia marina HOM05D006079 ORTHO05D008156 4.4e-173 611.7 432 70.8
TAR633G1690 Trochodendron aralioides HOM05D006079 ORTHO05D008156 4.4e-173 611.7 443 70.4
CsaV3_4G025930 Cucumis sativus L. HOM05D006079 ORTHO05D008156 7.5e-173 610.9 431 68.7
MELO3C003219.2 Cucumis melo HOM05D006079 ORTHO05D008156 2.2e-172 609.4 431 68.4
Cc06_g01790 Coffea canephora HOM05D006079 ORTHO05D008156 5.3e-171 604.7 435 67.8
HanXRQChr04g0124711 Helianthus annuus HOM05D006079 ORTHO05D008156 7.0e-171 604.4 433 68.4
ClCG04G007320 Citrullus lanatus HOM05D006079 ORTHO05D008156 2.9e-169 599.0 431 67.3
Sed0002088 Sechium edule HOM05D006079 ORTHO05D008156 4.2e-168 595.1 431 67.1
Migut.J00236 Erythranthe guttata HOM05D006079 ORTHO05D008156 1.6e-167 593.2 432 68.5
SGA_v2.0_scaffold85G26780 Striga asiatica HOM05D006079 ORTHO05D008156 2.1e-167 592.8 435 66.7
Aqoxy1G00752 Aquilegia oxysepala HOM05D006079 ORTHO05D008156 2.2e-164 582.8 432 66.9
Actinidia29142 Actinidia chinensis HOM05D006079 ORTHO05D008156 3.7e-164 582.0 424 71.2
AL4G34980 Arabidopsis lyrata HOM05D006079 ORTHO05D008156 1.4e-163 580.1 431 65.0
THA.LOC104823390 Tarenaya hassleriana HOM05D006079 ORTHO05D008156 1.4e-163 580.1 431 65.9
CARHR132560 Cardamine hirsuta HOM05D006079 ORTHO05D008156 4.1e-163 578.6 431 65.0
AT2G38000 Arabidopsis thaliana HOM05D006079 ORTHO05D008156 1.2e-162 577.0 432 65.5
Thhalv10016725m.g Eutrema salsugineum HOM05D006079 ORTHO05D008156 4.5e-162 575.1 432 64.6
BcaC02g11943 Brassica carinata HOM05D006079 ORTHO05D008156 5.9e-162 574.7 432 63.7
Ah.11g045330 Amaranthus hybridus HOM05D006079 ORTHO05D008156 1.0e-161 573.9 437 65.4
BcaB02g09226 Brassica carinata HOM05D006079 ORTHO05D008156 3.8e-161 572.0 432 63.4
A05p08000 Brassica napus HOM05D006079 ORTHO05D008156 3.8e-161 572.0 432 64.1
Rhsim05G0203500 Rhododendron simsii HOM05D006079 ORTHO05D008156 1.5e-160 570.1 352 76.4
Oeu015011.1 Olea europaea HOM05D006079 ORTHO05D008156 1.9e-160 569.7 412 69.9
BraA05t19766Z Brassica rapa HOM05D006079 ORTHO05D008156 3.3e-160 568.9 418 65.1
BolC4t22573H Brassica oleracea HOM05D006079 ORTHO05D008156 2.8e-159 565.8 422 64.0
Aa31LG5G23170 Aethionema arabicum HOM05D006079 ORTHO05D008156 1.8e-158 563.1 432 63.7
Carub.0004s1997 Capsella rubella HOM05D006079 ORTHO05D008156 4.4e-157 558.5 431 62.6
Sp4g20320 Schrenkiella parvula HOM05D006079 ORTHO05D008156 5.7e-157 558.1 431 61.9
AUR62041356 Chenopodium quinoa HOM05D006079 ORTHO05D008156 1.3e-156 557.0 394 70.1
BcaB02g09227 Brassica carinata HOM05D006079 ORTHO05D008156 2.7e-154 549.3 432 61.8
vmacro20226 Vaccinium macrocarpon HOM05D006079 ORTHO05D008156 2.7e-154 549.3 442 64.0
VMungo1383G1007 Vigna mungo HOM05D006079 ORTHO05D008156 4.5e-154 548.5 423 67.4
MBI05_g36624_MAGBIO Magnolia biondii HOM05D006079 ORTHO05D008156 4.3e-152 542.0 328 75.3
EL10Ac5g11535 Beta vulgaris HOM05D006079 ORTHO05D008156 4.0e-150 535.4 421 64.4
DCAR_024040 Daucus carota HOM05D006079 ORTHO05D008156 8.9e-150 534.3 464 61.2
Lsat_1_v5_gn_8_82341 Lactuca sativa HOM05D006079 ORTHO05D008156 1.2e-146 523.9 414 64.3
HPP92_006654 Vanilla planifolia HOM05D006079 ORTHO05D008156 1.2e-146 523.9 430 59.8
C04p09660 Brassica napus HOM05D006079 ORTHO05D008156 1.0e-145 520.8 400 63.0
Hma1.2p1_0763F.1_g214490 Hydrangea macrophylla HOM05D006079 ORTHO05D008156 5.0e-145 518.5 437 63.6
ATR0618G129 Amborella trichopoda HOM05D006079 ORTHO05D008156 2.5e-144 516.2 420 61.9
unitig_26.g9105 Utricularia gibba HOM05D006079 ORTHO05D008156 2.1e-143 513.1 422 60.7
CDE04G0224 Ceratophyllum demersum HOM05D006079 ORTHO05D008156 1.4e-142 510.4 416 60.6
Gohir.A13G086740 Gossypium hirsutum HOM05D006079 ORTHO05D008156 1.3e-140 503.8 430 60.5
Os05g0316200 Oryza sativa ssp. japonica HOM05D006079 ORTHO05D008156 4.9e-140 501.9 405 60.5
Zm00001eb169630 Zea mays HOM05D006079 ORTHO05D008156 1.9e-139 500.0 405 61.0
SEGI_08405 Sequoiadendron giganteum HOM05D006079 ORTHO05D008156 1.1e-134 484.2 343 67.1
TPR.G29287 Trifolium pratense HOM05D006079 ORTHO05D008156 2.4e-118 429.9 264 75.8
CDE07G0746 Ceratophyllum demersum HOM05D006079 ORTHO05D008156 8.7e-113 411.4 431 52.7
CAN.G338.65 Capsicum annuum HOM05D006079 ORTHO05D008156 7.3e-112 408.3 308 64.9
AagrBONN_evm.TU.Sc2ySwM_117.3694 Anthoceros agrestis HOM05D006079 ORTHO05D008156 2.8e-103 379.8 417 48.2
BcaC02g11941 Brassica carinata HOM05D006079 ORTHO05D008156 3.5e-98 362.8 218 74.8
Migut.J00237 Erythranthe guttata HOM05D006079 ORTHO05D008156 2.3e-97 360.1 401 50.4
Mapoly0040s0094 Marchantia polymorpha HOM05D006079 ORTHO05D008156 4.6e-90 335.9 424 42.0
SMO172G0100 Selaginella moellendorffii HOM05D006079 ORTHO05D008156 3.3e-88 329.7 320 51.9
HPP92_006629 Vanilla planifolia HOM05D006079 ORTHO05D008156 1.0e-84 318.2 306 52.6
Pp3c16_16710 Physcomitrium patens HOM05D006079 ORTHO05D008156 5.5e-83 312.4 424 41.5
Gohir.D13G085200 Gossypium hirsutum HOM05D006079 ORTHO05D008156 3.2e-75 286.6 203 70.0
CAN.G686.13 Capsicum annuum HOM05D006079 ORTHO05D008156 2.6e-56 223.8 128 82.0
Thhalv10017300m.g Eutrema salsugineum HOM05D006079 ORTHO05D008156 6.3e-55 219.2 223 50.2
Lsat_1_v5_gn_5_162881 Lactuca sativa HOM05D006079 ORTHO05D008156 3.1e-54 216.9 135 70.4
Gohir.A01G178136 Gossypium hirsutum HOM05D006079 ORTHO05D008156 9.1e-54 215.3 170 64.7
MD04G1144700 Malus domestica HOM05D006079 ORTHO05D008156 1.2e-48 198.4 159 66.0
Gorai.006G157700 Gossypium raimondii HOM05D006079 ORTHO05D008156 3.7e-39 166.8 134 67.9
QL07p036284 Quercus lobata HOM05D006079 ORTHO05D338014 1.4e-38 164.9 113 71.7
Gohir.D09G137350 Gossypium hirsutum HOM05D006079 ORTHO05D008156 2.4e-38 164.1 134 67.2
Cc02_g12960 Coffea canephora HOM05D006079 ORTHO05D008156 1.3e-31 141.7 112 64.3
TAR636G2503 Trochodendron aralioides HOM05D006079 ORTHO05D008156 1.3e-31 141.7 82 82.9
MD04G1144600 Malus domestica HOM05D006079 ORTHO05D032748 2.3e-28 131.0 92 64.1
TPR.G34865 Trifolium pratense HOM05D006079 ORTHO05D008156 4.9e-23 113.2 126 53.2
MBI05_g36625_MAGBIO Magnolia biondii HOM05D006079 ORTHO05D008156 2.6e-16 90.9 96 57.3
BraA05t21464Z Brassica rapa HOM05D006079 ORTHO05D032748 2.7e-13 80.9 53 64.2
BcaC04g24204 Brassica carinata HOM05D006079 ORTHO05D032748 1.1e-09 68.9 53 58.5


User provided reference genes

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