Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.2017 Acer truncatum HOM05D007791 ORTHO05D000653 7.8e-52 206.8 104 100.0
Atru.chr8.2026 Acer truncatum HOM05D007791 ORTHO05D000653 3.9e-51 204.5 104 99.0
Gohir.D04G122900 Gossypium hirsutum HOM05D007791 ORTHO05D000653 1.8e-24 115.9 102 61.8
Gohir.A04G084100 Gossypium hirsutum HOM05D007791 ORTHO05D000653 3.1e-24 115.2 102 61.8
Duzib106G0108 Durio zibethinus HOM05D007791 ORTHO05D000653 5.3e-24 114.4 101 61.4
Gorai.012G105800 Gossypium raimondii HOM05D007791 ORTHO05D000653 5.3e-24 114.4 102 60.8
Ciclev10013177m.g Citrus clementina HOM05D007791 ORTHO05D000653 1.2e-23 113.2 88 69.3
Duzib106G0736 Durio zibethinus HOM05D007791 ORTHO05D000653 1.2e-23 113.2 101 59.4
COL.COLO4_14751 Corchorus olitorius HOM05D007791 ORTHO05D000653 3.4e-23 111.7 103 60.2
Thecc.05G034800 Theobroma cacao HOM05D007791 ORTHO05D000653 7.6e-23 110.5 102 59.8
Thecc.05G034600 Theobroma cacao HOM05D007791 ORTHO05D000653 1.0e-22 110.2 102 61.8
Medtr3g020970 Medicago truncatula HOM05D007791 ORTHO05D000653 2.9e-22 108.6 103 59.2
TWI74G0823 Tripterygium wilfordii HOM05D007791 ORTHO05D000653 2.9e-22 108.6 105 59.0
Potri.006G088700 Populus trichocarpa HOM05D007791 ORTHO05D000653 1.4e-21 106.3 105 57.1
Potri.006G088500 Populus trichocarpa HOM05D007791 ORTHO05D000653 2.5e-21 105.5 104 56.7
Potri.006G088616 Populus trichocarpa HOM05D007791 ORTHO05D000653 2.5e-21 105.5 104 56.7
Dinv37146 Davidia involucrata HOM05D007791 ORTHO05D000653 3.2e-21 105.1 103 57.3
Glyma.11G151000 Glycine max HOM05D007791 ORTHO05D000653 5.5e-21 104.4 103 56.3
DCAR_010421 Daucus carota HOM05D007791 ORTHO05D000653 2.7e-20 102.1 95 51.6
Psat1g089000 Pisum sativum HOM05D007791 ORTHO05D000653 6.1e-20 100.9 85 58.8
Cpa.g.sc228.1 Carica papaya HOM05D007791 ORTHO05D000653 7.9e-20 100.5 112 50.9
CSS0023434 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 1.3e-19 99.8 104 55.8
CSS0036268 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 1.3e-19 99.8 104 55.8
Potri.006G088664 Populus trichocarpa HOM05D007791 ORTHO05D000653 1.3e-19 99.8 74 63.5
TPR.G3886 Trifolium pratense HOM05D007791 ORTHO05D000653 1.8e-19 99.4 104 54.8
PGR031G1849 Punica granatum HOM05D007791 ORTHO05D000653 2.3e-19 99.0 106 55.7
TAR623G1446 Trochodendron aralioides HOM05D007791 ORTHO05D000653 3.9e-19 98.2 104 54.8
TPR.G35313 Trifolium pratense HOM05D007791 ORTHO05D000653 5.1e-19 97.8 104 53.8
TPR.G3882 Trifolium pratense HOM05D007791 ORTHO05D000653 6.7e-19 97.4 104 54.8
Duzib106G1185 Durio zibethinus HOM05D007791 ORTHO05D000653 8.7e-19 97.1 94 56.4
Phvul.005G032000 Phaseolus vulgaris HOM05D007791 ORTHO05D000653 1.1e-18 96.7 103 53.4
Cc04_g14510 Coffea canephora HOM05D007791 ORTHO05D000653 3.3e-18 95.1 103 52.4
Manes.09G094800 Manihot esculenta HOM05D007791 ORTHO05D000653 3.3e-18 95.1 101 54.5
Oeu006881.1 Olea europaea HOM05D007791 ORTHO05D000653 7.4e-18 94.0 104 50.0
Lj3g0002224 Lotus japonicus HOM05D007791 ORTHO05D000653 2.8e-17 92.0 103 49.5
Solyc06g069400.4 Solanum lycopersicum HOM05D002101 ORTHO05D002126 2.8e-17 92.0 98 50.0
Peaxi162Scf00013g00738 Petunia axillaris HOM05D007791 ORTHO05D000653 4.8e-17 91.3 66 60.6
PGSC0003DMG400004064 Solanum tuberosum HOM05D007791 ORTHO05D000653 8.2e-17 90.5 88 52.3
Nitab4.5_0007505g0010 Nicotiana tabacum HOM05D002101 ORTHO05D002126 1.4e-16 89.7 64 60.9
Sopen06g026680 Solanum pennellii HOM05D007791 ORTHO05D000653 1.8e-16 89.4 98 49.0
GSVIVG01034125001 Vitis vinifera HOM05D007791 ORTHO05D000653 1.8e-16 89.4 113 48.7
CSS0008915 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 3.1e-16 88.6 72 58.3
Zm00001eb138720 Zea mays HOM05D007791 ORTHO05D000653 3.1e-16 88.6 64 65.6
Lsat_1_v5_gn_5_153840 Lactuca sativa HOM05D007791 ORTHO05D000653 5.3e-16 87.8 66 62.1
Nitab4.5_0002449g0040 Nicotiana tabacum HOM05D002101 ORTHO05D002126 5.3e-16 87.8 99 45.5
ECA248G2888 Erigeron canadensis HOM05D007791 ORTHO05D000653 1.2e-15 86.7 103 50.5
Migut.J00302 Erythranthe guttata HOM05D007791 ORTHO05D000653 5.9e-15 84.3 62 66.1
Rhsim05G0195200 Rhododendron simsii HOM05D007791 ORTHO05D000653 7.7e-15 84.0 70 58.6
CAN.G587.57 Capsicum annuum HOM05D007791 ORTHO05D000653 1.0e-14 83.6 64 57.8
Medtr3g020800 Medicago truncatula HOM05D007791 ORTHO05D000653 5.0e-14 81.3 103 47.6
HanXRQChr05g0136961 Helianthus annuus HOM05D007791 ORTHO05D000653 8.5e-14 80.5 94 45.7
PSO063G1561 Papaver somniferum HOM05D007791 ORTHO05D000653 1.1e-13 80.1 64 59.4
Rhsim05G0195400 Rhododendron simsii HOM05D007791 ORTHO05D000653 1.1e-13 80.1 104 46.2
Rhsim05G0195100 Rhododendron simsii HOM05D007791 ORTHO05D000653 3.2e-13 78.6 104 46.2
Medtr3g020930 Medicago truncatula HOM05D007791 ORTHO05D000653 1.6e-12 76.3 69 52.2
CsaV3_4G025200 Cucumis sativus L. HOM05D007791 ORTHO05D000653 7.9e-12 73.9 104 45.2
Eucgr.A01291 Eucalyptus grandis HOM05D007791 ORTHO05D000653 1.0e-11 73.6 65 56.9
arahy.Tifrunner.gnm1.ann1.0A2T8K Arachis hypogaea HOM05D007791 ORTHO05D000653 2.3e-11 72.4 104 40.4
arahy.Tifrunner.gnm1.ann1.NKRP5F Arachis hypogaea HOM05D007791 ORTHO05D000653 3.0e-11 72.0 85 44.7
Nitab4.5_0007505g0030 Nicotiana tabacum HOM05D007791 ORTHO05D000653 5.1e-11 71.2 61 50.8
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 2.5e-10 68.9 66 48.5
Aqoxy1G00874 Aquilegia oxysepala HOM05D007791 ORTHO05D000653 3.3e-10 68.6 61 57.4
CBR_g37573 Chara braunii HOM05D007791 ORTHO05D000653 3.3e-10 68.6 76 48.7
Pp3c23_22180 Physcomitrium patens HOM05D007791 ORTHO05D000653 3.3e-10 68.6 61 50.8
ATR0559G001 Amborella trichopoda HOM05D007791 ORTHO05D000653 4.3e-10 68.2 107 41.1
FvH4_4g02940 Fragaria vesca HOM05D001004 ORTHO05D000653 5.7e-10 67.8 68 47.1
SEGI_12735 Sequoiadendron giganteum HOM05D007791 ORTHO05D000653 5.7e-10 67.8 68 48.5
RcHm_v2.0_Chr4g0391001 Rosa chinensis HOM05D001004 ORTHO05D000653 2.2e-09 65.9 71 42.3
Os12g0548401 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 2.8e-09 65.5 64 54.7
Os12g0548700 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 2.8e-09 65.5 64 57.8
FAN17G1223 Fragaria x ananassa HOM05D001004 ORTHO05D000653 3.7e-09 65.1 68 45.6
Os01g0615050 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 8.2e-09 63.9 66 48.5
Hund02894 Selenicereus undatus HOM05D001004 ORTHO05D000653 8.2e-09 63.9 64 51.6
Os12g0437800 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 1.1e-08 63.5 68 50.0
Lj5g0010722 Lotus japonicus HOM05D001004 ORTHO05D000653 1.4e-08 63.2 64 46.9
Nn3g19560 Nelumbo nucifera HOM05D001004 ORTHO05D000653 1.4e-08 63.2 64 46.9
SEGI_18954 Sequoiadendron giganteum HOM05D001004 ORTHO05D000653 1.4e-08 63.2 73 41.1
Zm00001eb355990 Zea mays HOM05D007791 ORTHO05D000653 1.4e-08 63.2 64 51.6
MD13G1208800 Malus domestica HOM05D001004 ORTHO05D000653 2.4e-08 62.4 71 43.7
Medtr3g020880 Medicago truncatula HOM05D007791 ORTHO05D000653 2.4e-08 62.4 103 41.7
HPP92_012980 Vanilla planifolia HOM05D007791 ORTHO05D000653 2.4e-08 62.4 92 40.2
Zm00001eb267000 Zea mays HOM05D007791 ORTHO05D000653 2.4e-08 62.4 64 48.4
Prupe.1G032900 Prunus persica HOM05D001004 ORTHO05D000653 3.1e-08 62.0 64 42.2
HPP92_019239 Vanilla planifolia HOM05D007791 ORTHO05D000653 3.1e-08 62.0 64 46.9
CANSAT78G0302 Cannabis sativa HOM05D001004 ORTHO05D000653 4.1e-08 61.6 73 42.5
CDE02G1758 Ceratophyllum demersum HOM05D001004 ORTHO05D000653 4.1e-08 61.6 64 50.0
Medtr1g070335 Medicago truncatula HOM05D001004 ORTHO05D000653 5.3e-08 61.2 64 48.4
Zm00001eb267030 Zea mays HOM05D007791 ORTHO05D000653 5.3e-08 61.2 64 53.1
HanXRQChr01g0014531 Helianthus annuus HOM05D001004 ORTHO05D000653 6.9e-08 60.8 64 48.4
Phvul.009G203600 Phaseolus vulgaris HOM05D001004 ORTHO05D000653 9.1e-08 60.5 64 48.4
Potri.011G110100 Populus trichocarpa HOM05D001004 ORTHO05D000653 9.1e-08 60.5 64 50.0
Potri.011G110400 Populus trichocarpa HOM05D001004 ORTHO05D000653 9.1e-08 60.5 64 50.0
Prupe.8G229400 Prunus persica HOM05D001004 ORTHO05D000653 9.1e-08 60.5 64 43.8
FAN12G0154 Fragaria x ananassa HOM05D007967 ORTHO05D008195 1.2e-07 60.1 56 48.2
Gohir.D11G134300 Gossypium hirsutum HOM05D001004 ORTHO05D000653 1.2e-07 60.1 64 48.4
Gorai.007G143600 Gossypium raimondii HOM05D001004 ORTHO05D000653 1.2e-07 60.1 64 48.4
HanXRQChr13g0424431 Helianthus annuus HOM05D001004 ORTHO05D000653 1.5e-07 59.7 74 43.2
Manes.05G086329 Manihot esculenta HOM05D001004 ORTHO05D000653 1.5e-07 59.7 64 46.9
Medtr5g090250 Medicago truncatula HOM05D001004 ORTHO05D000653 2.0e-07 59.3 64 48.4
RcHm_v2.0_Chr4g0390821 Rosa chinensis HOM05D001004 ORTHO05D000653 2.0e-07 59.3 64 45.3
CiPaw.01G189700 Carya illinoinensis HOM05D001004 ORTHO05D000653 2.6e-07 58.9 64 46.9
HanXRQChr13g0424391 Helianthus annuus HOM05D001004 ORTHO05D000653 2.6e-07 58.9 74 43.2
Thecc.01G264300 Theobroma cacao HOM05D001004 ORTHO05D000653 2.6e-07 58.9 64 48.4
Zm00001eb267010 Zea mays HOM05D007791 ORTHO05D000653 2.6e-07 58.9 64 46.9
ClCG09G008110 Citrullus lanatus HOM05D001004 ORTHO05D000653 3.4e-07 58.5 64 50.0
Ciclev10022906m.g Citrus clementina HOM05D001004 ORTHO05D000653 3.4e-07 58.5 64 46.9
COL.COLO4_05577 Corchorus olitorius HOM05D001004 ORTHO05D000653 3.4e-07 58.5 64 48.4
Oeu002604.1 Olea europaea HOM05D001004 ORTHO05D000653 3.4e-07 58.5 64 43.8
SMO351G0292 Selaginella moellendorffii HOM05D007791 ORTHO05D000653 3.4e-07 58.5 65 46.2
Cfa006068 Carpinus fangiana HOM05D001004 ORTHO05D000653 4.5e-07 58.2 67 46.3
TPR.G18577 Trifolium pratense HOM05D001004 ORTHO05D000653 5.9e-07 57.8 64 48.4
COL.COLO4_05576 Corchorus olitorius HOM05D001004 ORTHO05D000653 7.7e-07 57.4 80 41.2
Gorai.007G143400 Gossypium raimondii HOM05D001004 ORTHO05D000653 7.7e-07 57.4 64 46.9
Os08g0441200 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 7.7e-07 57.4 64 46.9
Os08g0441300 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 7.7e-07 57.4 64 46.9
Zm00001eb355980 Zea mays HOM05D007791 ORTHO05D000653 7.7e-07 57.4 68 51.5
arahy.Tifrunner.gnm1.ann1.M1DDN9 Arachis hypogaea HOM05D001004 ORTHO05D000653 1.0e-06 57.0 64 46.9
Peaxi162Scf00325g00711 Petunia axillaris HOM05D001004 ORTHO05D000653 1.0e-06 57.0 64 45.3
Psat2g130960 Pisum sativum HOM05D001004 ORTHO05D000653 1.0e-06 57.0 64 46.9
RhsimUnG0178500 Rhododendron simsii HOM05D007791 ORTHO05D000653 1.0e-06 57.0 68 48.5
Sed0018468 Sechium edule HOM05D001004 ORTHO05D000653 1.0e-06 57.0 64 43.8
TPR.G9059 Trifolium pratense HOM05D001004 ORTHO05D000653 1.0e-06 57.0 64 48.4
Manes.15G037300 Manihot esculenta HOM05D001004 ORTHO05D000653 1.3e-06 56.6 64 45.3
HPP92_019238 Vanilla planifolia HOM05D007791 ORTHO05D000653 1.3e-06 56.6 61 45.9
Ciclev10022909m.g Citrus clementina HOM05D001004 ORTHO05D000653 1.7e-06 56.2 64 46.9
Haze_24569 Corylus avellana HOM05D001004 ORTHO05D000653 1.7e-06 56.2 67 46.3
Lj5g0009601 Lotus japonicus HOM05D001004 ORTHO05D000653 1.7e-06 56.2 64 42.2
Manes.05G086480 Manihot esculenta HOM05D001004 ORTHO05D000653 1.7e-06 56.2 64 43.8
Os11g0279750 Oryza sativa ssp. japonica HOM05D001004 ORTHO05D000653 1.7e-06 56.2 67 46.3
Potri.005G221000 Populus trichocarpa HOM05D001004 ORTHO05D000653 1.7e-06 56.2 64 45.3
EL10Ac5g10441 Beta vulgaris HOM05D001004 ORTHO05D000653 2.2e-06 55.8 64 46.9
Gohir.A11G128500 Gossypium hirsutum HOM05D001004 ORTHO05D000653 2.2e-06 55.8 64 48.4
Nitab4.5_0000302g0080 Nicotiana tabacum HOM05D001004 ORTHO05D000653 2.2e-06 55.8 64 45.3
RcHm_v2.0_Chr4g0390831 Rosa chinensis HOM05D001004 ORTHO05D000653 2.2e-06 55.8 64 46.9
Zm00001eb208560 Zea mays HOM05D014452 ORTHO05D000653 2.2e-06 55.8 64 42.2
Sabra11G0097900 Salix brachista HOM05D001004 ORTHO05D000653 2.9e-06 55.5 66 47.0
Sabra11G0098000 Salix brachista HOM05D001004 ORTHO05D000653 2.9e-06 55.5 66 47.0
COL.COLO4_12160 Corchorus olitorius HOM05D001004 ORTHO05D000653 3.8e-06 55.1 65 50.8
CsaV3_3G012540 Cucumis sativus L. HOM05D001004 ORTHO05D000653 3.8e-06 55.1 64 46.9
Hma1.2p1_0310F.1_g120950 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 3.8e-06 55.1 64 43.8
Psat4g107840 Pisum sativum HOM05D001004 ORTHO05D000653 3.8e-06 55.1 64 45.3
TAR633G2777 Trochodendron aralioides HOM05D001004 ORTHO05D000653 3.8e-06 55.1 64 45.3
ClCG07G000770 Citrullus lanatus HOM05D001004 ORTHO05D000653 5.0e-06 54.7 65 47.7
COL.COLO4_12159 Corchorus olitorius HOM05D001004 ORTHO05D000653 5.0e-06 54.7 64 43.8
FvH4_4g02840 Fragaria vesca HOM05D001004 ORTHO05D000653 5.0e-06 54.7 62 45.2
FAN12G0040 Fragaria x ananassa HOM05D001004 ORTHO05D000653 5.0e-06 54.7 62 45.2
Medtr5g045470 Medicago truncatula HOM05D001004 ORTHO05D000653 5.0e-06 54.7 64 45.3
arahy.Tifrunner.gnm1.ann1.AUM5GA Arachis hypogaea HOM05D001004 ORTHO05D000653 6.5e-06 54.3 64 46.9
arahy.Tifrunner.gnm1.ann1.T5EZBY Arachis hypogaea HOM05D001004 ORTHO05D000653 6.5e-06 54.3 64 42.2
CiPaw.04G183700 Carya illinoinensis HOM05D001004 ORTHO05D000653 6.5e-06 54.3 64 45.3
AUR62032224 Chenopodium quinoa HOM05D001004 ORTHO05D000653 6.5e-06 54.3 67 44.8
Sed0001135 Sechium edule HOM05D001004 ORTHO05D000653 6.5e-06 54.3 65 46.2
Sed0020724 Sechium edule HOM05D001004 ORTHO05D000653 6.5e-06 54.3 65 47.7
TPR.G24475 Trifolium pratense HOM05D003787 ORTHO05D000653 6.5e-06 54.3 64 43.8
arahy.Tifrunner.gnm1.ann1.KV3BZC Arachis hypogaea HOM05D001004 ORTHO05D000653 8.5e-06 53.9 64 42.2
Ciclev10006212m.g Citrus clementina HOM05D001004 ORTHO05D000653 8.5e-06 53.9 64 46.9
Migut.C00659 Erythranthe guttata HOM05D001004 ORTHO05D000653 8.5e-06 53.9 64 43.8
Glyma.09G103800 Glycine max HOM05D001004 ORTHO05D000653 8.5e-06 53.9 64 43.8
SalBow6G5036 Salvia bowleyana HOM05D001004 ORTHO05D000653 8.5e-06 53.9 64 46.9
GSVIVG01018141001 Vitis vinifera HOM05D001004 ORTHO05D000653 8.5e-06 53.9 64 45.3


User provided reference genes

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