Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 5.3e-84 314.3 158 100.0
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 2.8e-53 212.2 152 75.7
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.8e-52 209.5 151 72.2
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 2.4e-52 209.1 148 77.0
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.6e-51 206.5 133 80.5
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 1.6e-51 206.5 148 70.3
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 1.6e-51 206.5 151 70.2
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 1.3e-50 203.4 148 73.0
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.2e-50 202.6 150 72.0
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 3.8e-50 201.8 152 74.3
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 1.5e-49 199.9 152 69.7
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.5e-49 199.9 152 69.7
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 1.9e-49 199.5 141 76.6
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.5e-49 199.1 151 70.2
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 4.2e-49 198.4 141 75.9
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 5.5e-49 198.0 146 71.2
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 7.2e-49 197.6 153 67.3
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 7.2e-49 197.6 151 69.5
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 1.2e-48 196.8 152 71.7
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.6e-48 196.4 150 70.0
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 3.6e-48 195.3 163 65.6
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 8.0e-48 194.1 154 71.4
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 8.0e-48 194.1 154 71.4
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 1.4e-47 193.4 148 68.9
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.3e-47 192.6 143 69.2
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 8.8e-47 190.7 136 74.3
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.2e-46 190.3 153 66.0
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 1.5e-46 189.9 150 66.7
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 2.0e-46 189.5 156 67.3
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 2.0e-46 189.5 154 63.6
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.6e-46 189.1 149 67.1
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.6e-46 189.1 151 66.2
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.6e-46 189.1 148 65.5
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.6e-46 189.1 151 66.2
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 7.5e-46 187.6 147 71.4
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 9.8e-46 187.2 153 65.4
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 9.8e-46 187.2 153 64.1
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 1.3e-45 186.8 152 67.1
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.3e-45 186.8 151 65.6
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.7e-45 186.4 148 64.9
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 1.7e-45 186.4 157 62.4
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 2.8e-45 185.7 133 68.4
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 3.7e-45 185.3 151 68.2
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 4.8e-45 184.9 155 66.5
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 6.3e-45 184.5 151 64.2
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 8.3e-45 184.1 153 63.4
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 8.3e-45 184.1 138 68.1
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 8.3e-45 184.1 149 64.4
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 1.1e-44 183.7 133 68.4
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.1e-44 183.7 153 64.7
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.4e-44 183.3 156 68.6
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.4e-44 183.3 157 63.7
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.8e-44 183.0 137 69.3
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 4.1e-44 181.8 133 68.4
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 5.4e-44 181.4 164 61.0
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 7.0e-44 181.0 157 62.4
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 1.2e-43 180.3 155 62.6
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.6e-43 179.9 133 65.4
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.6e-43 179.9 146 60.3
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 2.7e-43 179.1 152 64.5
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 2.7e-43 179.1 155 61.9
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 3.5e-43 178.7 133 67.7
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 4.5e-43 178.3 133 65.4
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 5.9e-43 177.9 133 67.7
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 5.9e-43 177.9 149 66.4
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 5.9e-43 177.9 149 66.4
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 5.9e-43 177.9 151 62.9
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 7.7e-43 177.6 151 61.6
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 1.0e-42 177.2 133 66.9
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.0e-42 177.2 170 58.8
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.0e-42 177.2 154 63.6
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 2.2e-42 176.0 133 66.9
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 2.9e-42 175.6 133 68.4
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 2.9e-42 175.6 133 68.4
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 3.8e-42 175.3 133 66.9
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 5.0e-42 174.9 156 62.2
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 5.0e-42 174.9 154 63.6
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 6.5e-42 174.5 144 61.8
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 6.5e-42 174.5 146 65.8
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 8.5e-42 174.1 160 58.8
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 8.5e-42 174.1 139 65.5
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 1.5e-41 173.3 133 69.9
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 1.5e-41 173.3 133 65.4
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 1.9e-41 172.9 133 66.9
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.9e-41 172.9 160 60.6
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 3.2e-41 172.2 129 66.7
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 3.2e-41 172.2 133 66.2
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 3.2e-41 172.2 133 66.2
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 3.2e-41 172.2 147 69.4
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 4.2e-41 171.8 157 58.6
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 5.5e-41 171.4 129 72.9
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 7.2e-41 171.0 135 68.1
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 7.2e-41 171.0 138 71.0
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.2e-40 170.2 138 66.7
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 2.7e-40 169.1 168 57.1
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 4.7e-40 168.3 156 57.1
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.0e-39 167.2 136 64.7
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 1.8e-39 166.4 176 55.1
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 8.8e-39 164.1 140 62.9
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.2e-38 163.7 138 63.8
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 3.4e-38 162.2 170 56.5
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 5.7e-38 161.4 142 63.4
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 7.5e-38 161.0 149 56.4
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.7e-37 159.8 132 64.4
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 4.9e-37 158.3 154 59.7
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 4.9e-37 158.3 153 54.2
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.1e-36 157.1 137 59.1
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 3.5e-35 152.1 135 61.5
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 6.6e-34 147.9 140 57.9
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 6.6e-34 147.9 136 63.2
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 8.6e-34 147.5 136 59.6
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.1e-33 147.1 117 63.2
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 1.5e-33 146.7 145 57.9
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 5.6e-33 144.8 134 60.4
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 1.6e-32 143.3 133 54.1
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.8e-32 142.5 131 58.8
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 6.8e-31 137.9 140 54.3
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 1.5e-30 136.7 151 49.7
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 1.4e-28 130.2 115 60.0
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 4.1e-28 128.6 153 46.4
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 2.0e-27 126.3 115 58.3
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 4.6e-27 125.2 140 54.3
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.5e-25 120.2 116 55.2
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 1.5e-25 120.2 156 42.9
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 1.9e-25 119.8 94 55.3
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.9e-25 119.8 137 48.2
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 9.5e-25 117.5 138 44.9
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.6e-24 116.7 162 42.6
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 2.1e-24 116.3 148 40.5
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 2.8e-24 115.9 88 54.5
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.6e-24 115.5 121 56.2
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 4.7e-24 115.2 121 56.2
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 6.2e-24 114.8 136 47.1
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.3e-23 112.8 82 64.6
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 3.4e-22 109.0 88 55.7
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 6.4e-21 104.8 114 46.5
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 4.6e-19 98.6 73 53.4
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 7.8e-19 97.8 132 38.6
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 6.6e-18 94.7 62 66.1
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 1.5e-17 93.6 116 54.3
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.8e-16 89.4 131 37.4
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 6.2e-16 88.2 112 46.4
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 8.1e-16 87.8 113 56.6
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 1.1e-15 87.4 133 33.1
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 2.3e-15 86.3 147 32.0
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 1.2e-14 84.0 88 44.3
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 4.4e-14 82.0 109 34.9
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.9e-13 79.3 88 40.9
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 1.4e-12 77.0 99 49.5
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 3.2e-12 75.9 84 39.3
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 3.5e-11 72.4 83 51.8
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 1.1e-09 67.4 116 41.4
CiPaw.05G236000 Carya illinoinensis HOM05D004429 ORTHO05D005583 4.7e-08 62.0 74 54.1
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 1.1e-07 60.8 43 58.1
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.1e-07 60.8 126 34.1


User provided reference genes

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