Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 3.9e-215 751.1 367 100.0
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 1.3e-173 613.2 366 82.5
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 8.9e-167 590.5 368 79.6
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 2.6e-166 589.0 367 79.6
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 6.4e-165 584.3 372 77.2
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 2.0e-163 579.3 368 78.8
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 2.7e-163 578.9 366 77.0
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 6.0e-163 577.8 308 88.3
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 7.8e-163 577.4 368 77.2
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 7.8e-163 577.4 368 78.0
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 1.0e-162 577.0 370 77.6
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 1.7e-162 576.2 367 76.8
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 3.9e-162 575.1 367 75.5
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 1.5e-161 573.2 366 76.5
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 1.9e-161 572.8 369 77.0
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 4.3e-161 571.6 370 77.0
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 5.6e-161 571.2 361 78.4
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 4.7e-160 568.2 369 75.9
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 4.7e-160 568.2 368 76.1
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 8.1e-160 567.4 353 77.3
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 3.1e-159 565.5 311 85.9
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 4.0e-159 565.1 365 76.2
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 3.4e-158 562.0 367 75.2
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 7.5e-158 560.8 371 75.2
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 2.9e-157 558.9 367 74.1
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 4.9e-157 558.1 335 80.0
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 1.4e-156 556.6 357 75.4
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 1.9e-156 556.2 369 75.9
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 1.9e-156 556.2 372 75.3
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 1.2e-155 553.5 366 74.6
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 1.6e-155 553.1 356 75.8
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.6e-155 553.1 367 74.4
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 2.1e-155 552.7 316 82.6
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 2.1e-155 552.7 369 74.0
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 3.5e-155 552.0 372 73.9
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 3.5e-155 552.0 366 73.2
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 6.0e-155 551.2 367 73.8
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 1.3e-154 550.1 367 71.7
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.3e-154 550.1 350 77.4
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 1.3e-154 550.1 371 73.3
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 1.7e-154 549.7 391 70.1
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 2.3e-154 549.3 323 81.1
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 3.0e-154 548.9 316 82.3
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 3.0e-154 548.9 373 71.8
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.9e-154 548.5 367 74.4
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 5.1e-154 548.1 367 71.9
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 6.6e-154 547.7 367 71.9
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 6.6e-154 547.7 324 78.7
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 1.1e-153 547.0 336 76.8
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 1.5e-153 546.6 336 76.8
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 1.9e-153 546.2 303 82.5
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 2.5e-153 545.8 369 72.6
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 2.5e-153 545.8 324 78.4
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.5e-153 545.8 359 73.5
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 3.3e-153 545.4 367 72.5
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 4.3e-153 545.0 372 72.3
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 4.3e-153 545.0 371 72.0
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 5.6e-153 544.7 367 71.9
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 7.3e-153 544.3 354 76.6
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 9.5e-153 543.9 337 77.2
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 1.2e-152 543.5 353 76.2
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 2.1e-152 542.7 373 72.9
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 2.8e-152 542.3 357 75.6
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 4.7e-152 541.6 370 72.2
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 1.8e-151 539.7 336 75.9
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 3.1e-151 538.9 368 71.7
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 4.0e-151 538.5 368 72.0
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 5.2e-151 538.1 369 70.7
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 6.8e-151 537.7 357 72.8
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 8.9e-151 537.3 355 72.7
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 8.9e-151 537.3 355 75.2
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 2.0e-150 536.2 314 80.6
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 2.0e-150 536.2 367 71.1
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 2.6e-150 535.8 374 70.3
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 2.6e-150 535.8 367 70.0
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 3.4e-150 535.4 367 70.3
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 2.9e-149 532.3 367 69.5
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 3.8e-149 531.9 353 71.7
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 6.4e-149 531.2 355 72.7
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 8.4e-149 530.8 369 71.3
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 8.4e-149 530.8 367 68.4
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 1.1e-148 530.4 363 71.9
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.4e-148 530.0 366 72.7
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 1.4e-148 530.0 367 69.8
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 1.9e-148 529.6 363 71.9
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 1.9e-148 529.6 363 71.9
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 2.4e-148 529.3 371 71.4
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 2.4e-148 529.3 367 71.4
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 3.2e-148 528.9 364 72.3
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 1.2e-147 526.9 368 71.5
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 1.2e-147 526.9 366 68.9
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 2.7e-147 525.8 369 71.0
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 7.8e-147 524.2 355 72.1
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 7.8e-147 524.2 365 72.1
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 7.8e-147 524.2 368 69.6
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 7.8e-147 524.2 377 69.0
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 3.9e-146 521.9 336 77.1
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 1.1e-145 520.4 364 69.5
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 1.5e-145 520.0 370 69.5
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 7.3e-145 517.7 351 72.6
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.8e-143 513.1 481 56.8
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.3e-141 506.9 385 67.5
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 8.4e-141 504.2 329 77.2
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 2.4e-140 502.7 310 76.8
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 3.5e-139 498.8 313 74.8
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 3.5e-139 498.8 312 75.3
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 3.0e-138 495.7 323 74.6
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 7.6e-134 481.1 390 65.4
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 7.9e-131 471.1 292 78.4
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 1.4e-127 460.3 277 79.8
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 5.3e-127 458.4 340 69.1
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 1.7e-125 453.4 328 68.0
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.3e-120 437.2 282 71.3
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 6.9e-119 431.4 286 67.8
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 1.2e-115 420.6 355 62.3
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 1.8e-114 416.8 326 66.9
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 5.1e-114 415.2 317 62.1
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 1.9e-113 413.3 283 71.0
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 5.9e-110 401.7 285 66.3
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.7e-109 400.2 243 77.8
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 7.9e-107 391.3 258 75.2
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 5.3e-103 378.6 300 60.0
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 5.9e-102 375.2 290 61.4
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 9.4e-100 367.9 258 71.3
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 2.0e-97 360.1 284 61.6
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 3.3e-97 359.4 294 57.5
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 2.7e-91 339.7 326 58.3
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 1.4e-87 327.4 293 56.3
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 9.1e-79 298.1 168 83.3
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 1.2e-78 297.7 159 86.2
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 2.3e-66 256.9 229 57.2
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 1.5e-60 237.7 127 85.8
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 3.6e-59 233.0 131 80.9
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 7.5e-57 225.3 319 45.8
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 8.6e-53 211.8 146 69.9
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 2.0e-46 190.7 146 65.1
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.9e-45 186.4 100 85.0
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 7.3e-44 182.2 146 63.7
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 6.4e-40 169.1 124 62.1
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 1.6e-38 164.5 146 56.8
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 9.5e-36 155.2 108 63.9
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.2e-27 128.3 72 86.1
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 3.5e-22 110.2 114 54.4
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 3.9e-21 106.7 57 84.2
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 2.5e-20 104.0 64 78.1
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 2.4e-18 97.4 67 65.7
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 2.4e-18 97.4 67 65.7
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 8.4e-16 89.0 44 86.4
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 1.9e-15 87.8 44 86.4
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 3.2e-15 87.0 43 88.4
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 3.5e-14 83.6 41 90.2
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 7.4e-12 75.9 35 91.4
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 5.8e-09 66.2 37 86.5
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 6.4e-08 62.8 77 46.8
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 8.4e-08 62.4 98 49.0
BcaB03g16084 Brassica carinata HOM05D004804 ORTHO05D001170 6.0e-06 56.2 51 52.9


User provided reference genes

Program Settings