Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 2.7e-46 188.3 97 100.0
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 6.2e-19 97.4 98 58.2
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 3.1e-18 95.1 86 64.0
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 7.6e-17 90.5 100 57.0
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 7.6e-17 90.5 94 54.3
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 2.2e-16 89.0 92 57.6
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.4e-15 86.3 96 53.1
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 2.5e-15 85.5 94 51.1
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 2.5e-15 85.5 97 54.6
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 3.2e-15 85.1 93 51.6
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 3.2e-15 85.1 92 55.4
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 7.1e-15 84.0 96 47.9
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 9.3e-15 83.6 95 54.7
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.2e-14 83.2 92 55.4
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 3.5e-14 81.6 90 53.3
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.5e-14 81.6 89 51.7
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.6e-14 81.3 97 52.6
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 6.0e-14 80.9 86 59.3
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.0e-13 80.1 97 51.5
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.0e-13 80.1 86 58.1
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.3e-13 79.7 97 52.6
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.8e-13 79.3 93 53.8
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.8e-13 79.3 95 51.6
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.3e-13 79.0 97 50.5
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.3e-13 79.0 95 46.3
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 2.3e-13 79.0 96 46.9
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.0e-13 78.6 62 62.9
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 3.9e-13 78.2 96 52.1
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 6.7e-13 77.4 101 53.5
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 6.7e-13 77.4 90 53.3
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 8.7e-13 77.0 70 55.7
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.1e-12 76.6 95 45.3
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 1.1e-12 76.6 96 45.8
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.9e-12 75.9 100 47.0
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 2.5e-12 75.5 99 45.5
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 2.5e-12 75.5 96 45.8
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.3e-12 75.1 91 51.6
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 3.3e-12 75.1 95 47.4
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 4.3e-12 74.7 96 46.9
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 4.3e-12 74.7 95 44.2
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 5.7e-12 74.3 91 50.5
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 5.7e-12 74.3 95 46.3
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 7.4e-12 73.9 96 44.8
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 9.7e-12 73.6 97 49.5
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.7e-12 73.6 97 49.5
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 9.7e-12 73.6 99 46.5
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 9.7e-12 73.6 98 56.1
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.3e-11 73.2 97 49.5
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.3e-11 73.2 97 49.5
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 1.3e-11 73.2 87 50.6
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 1.6e-11 72.8 89 47.2
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 1.6e-11 72.8 97 51.5
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.6e-11 72.8 95 42.1
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 2.2e-11 72.4 106 49.1
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.2e-11 72.4 91 51.6
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 2.2e-11 72.4 88 54.5
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.8e-11 72.0 95 45.3
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 2.8e-11 72.0 87 51.7
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.7e-11 71.6 61 60.7
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 3.7e-11 71.6 98 49.0
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.8e-11 71.2 97 43.3
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.8e-11 71.2 95 43.2
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 4.8e-11 71.2 65 58.5
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 6.3e-11 70.9 98 44.9
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 6.3e-11 70.9 95 41.1
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 6.3e-11 70.9 89 41.6
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 6.3e-11 70.9 95 44.2
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 6.3e-11 70.9 98 48.0
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 6.3e-11 70.9 92 51.1
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 8.2e-11 70.5 95 43.2
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 1.4e-10 69.7 102 44.1
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.4e-10 69.7 42 73.8
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 1.8e-10 69.3 88 48.9
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 2.4e-10 68.9 92 44.6
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 2.4e-10 68.9 88 50.0
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 2.4e-10 68.9 95 42.1
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 3.1e-10 68.6 80 50.0
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 3.1e-10 68.6 97 48.5
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.1e-10 68.2 96 45.8
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 4.1e-10 68.2 95 42.1
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.3e-10 67.8 95 45.3
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 5.3e-10 67.8 99 42.4
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 5.3e-10 67.8 95 46.3
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 5.3e-10 67.8 93 39.8
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 6.9e-10 67.4 97 43.3
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.9e-10 67.4 98 48.0
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.9e-10 67.4 95 44.2
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 6.9e-10 67.4 95 43.2
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 6.9e-10 67.4 102 46.1
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 6.9e-10 67.4 99 41.4
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 9.0e-10 67.0 95 44.2
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 9.0e-10 67.0 92 52.2
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 9.0e-10 67.0 90 46.7
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-09 66.6 37 83.8
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 1.2e-09 66.6 101 44.6
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.2e-09 66.6 90 46.7
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 1.5e-09 66.2 101 43.6
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 1.5e-09 66.2 101 43.6
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 1.5e-09 66.2 91 47.3
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.0e-09 65.9 64 54.7
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 2.0e-09 65.9 99 44.4
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.0e-09 65.9 97 42.3
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.0e-09 65.9 97 42.3
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.6e-09 65.5 92 50.0
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 3.4e-09 65.1 91 50.5
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 3.4e-09 65.1 91 50.5
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 3.4e-09 65.1 89 44.9
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 3.4e-09 65.1 90 51.1
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 3.4e-09 65.1 102 44.1
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 4.5e-09 64.7 101 42.6
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 4.5e-09 64.7 101 42.6
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.5e-09 64.7 97 45.4
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.5e-09 64.7 97 44.3
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 5.9e-09 64.3 93 44.1
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 5.9e-09 64.3 95 43.2
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 5.9e-09 64.3 97 42.3
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 1.3e-08 63.2 89 39.3
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.7e-08 62.8 97 39.2
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.7e-08 62.8 95 40.0
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 2.2e-08 62.4 89 40.4
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 2.2e-08 62.4 89 41.6
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 2.9e-08 62.0 93 37.6
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 2.9e-08 62.0 96 43.8
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 3.8e-08 61.6 90 46.7
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 5.0e-08 61.2 88 43.2
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 5.0e-08 61.2 96 43.8
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 6.5e-08 60.8 96 45.8
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 6.5e-08 60.8 42 69.0
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 6.5e-08 60.8 95 45.3
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 6.5e-08 60.8 95 45.3
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 6.5e-08 60.8 95 40.0
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 6.5e-08 60.8 97 39.2
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 8.5e-08 60.5 91 44.0
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 8.5e-08 60.5 96 39.6
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 1.1e-07 60.1 93 39.8
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 1.1e-07 60.1 98 39.8
Ah.08g210930 Amaranthus hybridus HOM05D040036 ORTHO05D004215 1.4e-07 59.7 100 43.0
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.4e-07 59.7 87 41.4
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 2.5e-07 58.9 91 41.8
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 2.5e-07 58.9 86 40.7
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 2.5e-07 58.9 95 38.9
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.5e-07 58.9 90 43.3
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 3.2e-07 58.5 93 39.8
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 3.2e-07 58.5 96 37.5
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 3.2e-07 58.5 40 70.0
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 4.2e-07 58.2 96 40.6
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 5.5e-07 57.8 42 64.3
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 5.5e-07 57.8 93 36.6
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 5.5e-07 57.8 79 45.6
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 7.2e-07 57.4 93 37.6
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 9.3e-07 57.0 63 47.6
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 9.3e-07 57.0 93 39.8
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 1.2e-06 56.6 100 36.0
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.2e-06 56.6 103 39.8
EL10Ac7g16989 Beta vulgaris HOM05D040036 ORTHO05D004215 1.6e-06 56.2 97 44.3
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 1.6e-06 56.2 97 36.1
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 2.1e-06 55.8 95 38.9
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 2.1e-06 55.8 97 34.0
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 2.7e-06 55.5 95 35.8
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 2.7e-06 55.5 92 39.1
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 3.6e-06 55.1 97 38.1
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 3.6e-06 55.1 93 40.9
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 4.6e-06 54.7 102 36.3
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 6.1e-06 54.3 87 37.9
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 7.9e-06 53.9 95 34.7
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 7.9e-06 53.9 43 60.5
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 7.9e-06 53.9 89 39.3


User provided reference genes

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