Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 2.2e-171 605.5 306 100.0
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 2.8e-134 482.3 305 76.7
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 3.3e-130 468.8 303 75.6
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 9.8e-127 457.2 303 71.0
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 1.1e-125 453.8 305 72.1
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 1.8e-125 453.0 303 73.6
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.6e-124 449.9 302 72.2
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 2.3e-123 446.0 302 71.9
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 2.5e-122 442.6 302 70.5
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 2.5e-122 442.6 305 68.9
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 2.3e-120 436.0 302 71.5
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 3.1e-120 435.6 304 69.7
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 1.2e-119 433.7 302 67.9
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 4.4e-119 431.8 306 68.0
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 2.9e-118 429.1 301 69.4
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 4.9e-118 428.3 299 70.6
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 2.4e-117 426.0 305 67.2
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 4.1e-117 425.2 305 67.9
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 9.2e-117 424.1 298 69.5
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 2.0e-116 422.9 325 64.3
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 1.0e-115 420.6 305 67.9
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 1.5e-114 416.8 300 65.3
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 1.9e-114 416.4 300 66.3
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 4.3e-114 415.2 305 66.6
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 5.6e-114 414.8 306 66.3
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 7.3e-114 414.5 305 66.6
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 1.2e-113 413.7 305 64.3
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 1.6e-113 413.3 303 68.0
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 2.1e-113 412.9 303 67.7
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 1.4e-112 410.2 304 62.2
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 8.9e-112 407.5 302 65.6
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 1.2e-111 407.1 303 62.4
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 3.7e-110 402.1 300 64.3
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 3.7e-110 402.1 301 60.5
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 3.7e-110 402.1 301 61.1
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 1.1e-109 400.6 303 61.4
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 1.9e-109 399.8 300 64.3
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 3.2e-109 399.1 319 60.8
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 1.0e-107 394.0 302 63.6
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 1.3e-107 393.7 302 62.6
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 2.3e-107 392.9 305 63.6
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 3.0e-107 392.5 305 65.6
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 3.0e-107 392.5 300 65.0
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 3.9e-107 392.1 301 62.5
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 5.1e-107 391.7 305 63.3
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 8.6e-107 391.0 304 65.5
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 8.6e-107 391.0 305 63.3
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 1.1e-106 390.6 305 64.6
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 1.1e-106 390.6 303 65.0
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.5e-106 390.2 302 64.2
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 5.6e-106 388.3 305 61.0
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 5.6e-106 388.3 302 63.9
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 7.3e-106 387.9 303 62.7
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 7.3e-106 387.9 305 62.6
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 2.1e-105 386.3 305 63.3
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 4.7e-105 385.2 302 63.2
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 2.3e-104 382.9 303 64.0
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 2.3e-104 382.9 302 58.3
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 5.2e-104 381.7 305 64.6
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 5.2e-104 381.7 305 64.6
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 1.5e-103 380.2 306 65.0
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 3.4e-103 379.0 297 65.7
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 4.4e-103 378.6 274 69.0
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 5.8e-103 378.3 306 64.7
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 2.9e-102 375.9 295 61.7
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 1.4e-101 373.6 304 63.5
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 1.4e-101 373.6 303 59.7
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 7.1e-101 371.3 305 62.6
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 3.5e-100 369.0 303 60.1
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 2.3e-99 366.3 311 60.5
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 2.3e-99 366.3 302 59.6
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 1.9e-98 363.2 295 60.0
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 4.3e-98 362.1 301 62.1
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 1.2e-97 360.5 261 70.1
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 1.8e-96 356.7 303 58.1
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 1.5e-95 353.6 263 71.5
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 1.7e-94 350.1 304 58.9
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 3.8e-94 349.0 231 70.1
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 8.4e-94 347.8 264 67.8
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 6.0e-92 341.7 303 53.8
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 3.0e-91 339.3 306 56.9
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 6.6e-91 338.2 305 58.0
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 2.8e-89 332.8 304 55.9
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.8e-88 330.1 259 65.3
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 2.9e-86 322.8 320 55.0
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 1.4e-85 320.5 309 54.7
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 4.6e-84 315.5 259 61.4
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 1.5e-82 310.5 224 64.7
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 3.1e-80 302.8 279 58.8
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 4.5e-79 298.9 235 67.7
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 9.9e-79 297.7 224 62.5
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 8.4e-78 294.7 254 59.4
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 1.2e-76 290.8 233 60.5
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 5.1e-75 285.4 259 54.4
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 4.5e-71 272.3 262 55.7
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 4.6e-68 262.3 211 58.8
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 1.9e-66 256.9 224 58.9
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 2.8e-65 253.1 306 46.4
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 9.0e-64 248.1 312 42.0
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 3.0e-59 233.0 154 68.8
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 3.9e-59 232.6 301 47.5
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 9.7e-58 228.0 187 64.7
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 9.7e-58 228.0 300 41.3
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 1.6e-57 227.3 197 57.9
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 1.6e-57 227.3 322 39.8
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 1.6e-52 210.7 300 40.3
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 3.7e-49 199.5 213 50.2
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 4.5e-47 192.6 221 45.2
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 3.8e-46 189.5 193 51.8
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 7.2e-45 185.3 163 54.0
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 2.8e-41 173.3 246 45.1
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 7.0e-40 168.7 160 55.6
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 2.9e-38 163.3 321 31.8
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 6.5e-38 162.2 149 53.7
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 6.1e-36 155.6 161 55.9
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 1.0e-35 154.8 104 65.4
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 3.5e-31 139.8 148 48.6
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 3.0e-27 126.7 210 41.9
Lsat_1_v5_gn_1_48021 Lactuca sativa HOM05D005679 ORTHO05D007228 3.0e-27 126.7 90 62.2
AUR62028549 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.2e-26 124.8 164 44.5
Lj2A135G55 Lonicera japonica HOM05D005679 ORTHO05D007228 2.8e-25 120.2 75 65.3
Gorai.006G155900 Gossypium raimondii HOM05D005679 ORTHO05D007228 1.8e-24 117.5 74 71.6
Gohir.D09G135950 Gossypium hirsutum HOM05D005679 ORTHO05D007228 5.4e-24 115.9 74 70.3
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 9.1e-24 115.2 145 43.4
DCAR_009157 Daucus carota HOM05D005679 ORTHO05D007228 1.7e-22 110.9 118 46.6
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 1.2e-20 104.8 187 38.0
PRCOL_00001551 Prasinoderma coloniale HOM05D005679 ORTHO05D007228 1.2e-15 88.2 140 39.3
SEGI_00479 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 4.2e-13 79.7 70 45.7
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 2.8e-12 77.0 106 44.3
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 2.9e-09 67.0 37 83.8


User provided reference genes

Program Settings