Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 7.4e-71 270.4 134 100.0
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 4.2e-58 228.0 134 82.1
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 9.4e-58 226.9 134 82.1
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 6.1e-57 224.2 133 82.0
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 1.0e-56 223.4 133 82.0
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 1.8e-56 222.6 134 80.6
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 1.8e-56 222.6 133 78.9
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 3.0e-56 221.9 134 79.1
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 4.0e-56 221.5 134 80.6
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 5.2e-56 221.1 134 81.3
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 6.8e-56 220.7 133 78.2
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 1.5e-55 219.5 133 75.9
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 2.0e-55 219.2 133 78.9
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 2.6e-55 218.8 133 78.9
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 4.4e-55 218.0 134 76.1
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 9.8e-55 216.9 133 78.2
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 9.8e-55 216.9 133 77.4
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 9.8e-55 216.9 133 77.4
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 9.8e-55 216.9 133 78.9
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 1.7e-54 216.1 130 80.8
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.7e-54 216.1 133 75.9
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.8e-54 215.3 131 75.6
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.1e-53 213.4 131 75.6
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.4e-53 212.2 133 75.2
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 2.4e-53 212.2 133 76.7
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 4.1e-53 211.5 126 78.6
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 5.4e-53 211.1 126 80.2
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 5.4e-53 211.1 130 76.2
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 7.0e-53 210.7 126 78.6
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 7.0e-53 210.7 131 74.8
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 9.1e-53 210.3 133 75.9
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 9.1e-53 210.3 131 74.8
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.6e-52 209.5 126 79.4
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 1.6e-52 209.5 130 73.8
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 1.6e-52 209.5 128 78.9
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.7e-52 208.8 128 76.6
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 3.5e-52 208.4 127 76.4
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 3.5e-52 208.4 131 74.8
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 4.5e-52 208.0 127 76.4
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 5.9e-52 207.6 130 75.4
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 5.9e-52 207.6 134 74.6
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 7.7e-52 207.2 134 73.9
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 7.7e-52 207.2 126 77.8
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.3e-51 206.5 126 78.6
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.7e-51 206.1 122 77.9
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 2.9e-51 205.3 133 72.9
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 3.8e-51 204.9 126 76.2
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 3.8e-51 204.9 134 72.4
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.1e-50 203.4 126 77.8
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 1.5e-50 203.0 122 79.5
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 2.5e-50 202.2 130 73.1
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 3.2e-50 201.8 126 77.0
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 4.2e-50 201.4 131 71.0
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 9.4e-50 200.3 130 71.5
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 1.6e-49 199.5 125 76.8
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 2.7e-49 198.7 130 70.0
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 3.6e-49 198.4 126 72.2
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 4.7e-49 198.0 124 76.6
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 6.1e-49 197.6 127 70.9
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 8.0e-49 197.2 126 75.4
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.0e-48 196.8 124 77.4
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 1.8e-48 196.1 125 73.6
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 1.8e-48 196.1 124 72.6
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 3.0e-48 195.3 124 74.2
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.0e-48 195.3 126 75.4
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.0e-48 195.3 127 74.0
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 2.0e-47 192.6 124 71.0
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 2.0e-47 192.6 128 72.7
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 2.6e-47 192.2 130 68.5
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 4.4e-47 191.4 123 73.2
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 7.5e-47 190.7 130 68.5
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 2.8e-46 188.7 124 72.6
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 3.7e-46 188.3 124 67.7
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 4.9e-46 188.0 122 75.4
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 4.9e-46 188.0 122 74.6
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 6.3e-46 187.6 128 71.1
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.4e-45 186.4 147 62.6
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 1.8e-45 186.0 121 74.4
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 4.1e-45 184.9 132 68.9
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 4.1e-45 184.9 128 71.9
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 5.4e-45 184.5 129 69.0
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 7.0e-45 184.1 120 74.2
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 1.6e-44 183.0 114 77.2
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 1.6e-44 183.0 129 66.7
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 1.6e-44 183.0 129 65.9
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 1.6e-44 183.0 128 71.9
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.0e-44 182.6 134 64.2
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 2.0e-44 182.6 130 65.4
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 2.0e-44 182.6 128 71.1
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 5.9e-44 181.0 125 69.6
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.7e-43 179.5 127 63.8
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.3e-43 179.1 127 66.9
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 6.6e-43 177.6 129 66.7
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 1.1e-42 176.8 128 68.8
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.5e-42 176.4 127 64.6
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 3.3e-42 175.3 125 66.4
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 4.2e-42 174.9 129 62.0
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 9.5e-42 173.7 129 67.4
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 9.5e-42 173.7 123 65.9
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 1.2e-41 173.3 123 67.5
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 1.6e-41 172.9 123 64.2
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 2.8e-41 172.2 128 65.6
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 3.6e-41 171.8 125 64.8
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 4.7e-41 171.4 101 80.2
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 4.7e-41 171.4 101 80.2
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 6.1e-41 171.0 124 67.7
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 8.0e-41 170.6 131 59.5
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.0e-40 170.2 135 60.7
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.0e-40 170.2 117 68.4
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 1.8e-40 169.5 127 63.0
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 2.3e-40 169.1 114 73.7
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 4.0e-40 168.3 119 68.1
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 5.2e-40 167.9 129 64.3
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 5.2e-40 167.9 128 63.3
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 8.9e-40 167.2 124 63.7
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 8.9e-40 167.2 112 69.6
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 8.9e-40 167.2 128 60.2
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 8.9e-40 167.2 125 60.8
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.2e-39 166.8 125 64.8
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 1.2e-39 166.8 126 65.9
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 1.5e-39 166.4 119 63.9
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.0e-39 166.0 131 61.8
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 2.0e-39 166.0 125 62.4
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 2.0e-39 166.0 125 62.4
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 2.0e-39 166.0 125 62.4
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 3.4e-39 165.2 119 64.7
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 3.4e-39 165.2 125 62.4
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 5.7e-39 164.5 131 62.6
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 5.7e-39 164.5 120 67.5
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 5.7e-39 164.5 122 63.9
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 7.5e-39 164.1 105 75.2
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 9.8e-39 163.7 123 65.9
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 9.8e-39 163.7 125 60.8
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 9.8e-39 163.7 124 62.9
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 1.3e-38 163.3 131 60.3
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 6.4e-38 161.0 124 59.7
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 1.4e-37 159.8 123 64.2
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.4e-37 159.1 124 61.3
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 4.1e-37 158.3 118 61.9
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 4.1e-37 158.3 118 61.9
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 5.4e-37 157.9 118 62.7
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 5.4e-37 157.9 124 61.3
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 9.2e-37 157.1 109 68.8
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 1.2e-36 156.8 125 60.0
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 1.2e-36 156.8 125 60.0
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 2.7e-36 155.6 118 61.9
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 4.6e-36 154.8 138 60.9
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 5.9e-36 154.5 117 62.4
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 7.8e-36 154.1 129 65.1
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 1.7e-35 152.9 126 60.3
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 2.5e-34 149.1 128 58.6
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.2e-33 146.7 128 60.9
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 1.6e-33 146.4 124 58.1
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 2.1e-33 146.0 116 59.5
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 3.1e-32 142.1 127 52.8
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 1.3e-30 136.7 128 55.5
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 3.5e-28 128.6 79 79.7
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 7.8e-28 127.5 119 52.1
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 4.0e-24 115.2 66 72.7
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 2.4e-21 105.9 63 71.4
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 4.1e-21 105.1 65 78.5
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 1.2e-17 93.6 112 41.1
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 8.1e-17 90.9 62 69.4
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 8.1e-17 90.9 62 69.4
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.4e-16 90.1 53 75.5
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.3e-16 89.4 81 61.7
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 3.1e-16 89.0 65 72.3
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.2e-16 88.2 53 73.6
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 8.9e-16 87.4 69 69.6
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 2.0e-15 86.3 62 72.6
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 3.4e-15 85.5 53 71.7
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 3.4e-15 85.5 68 52.9
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.3e-14 83.6 69 62.3
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 8.4e-14 80.9 121 37.2
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 7.8e-12 74.3 58 69.0
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 7.8e-12 74.3 59 62.7
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.8e-08 63.2 64 48.4
HanXRQChr02g0053341 Helianthus annuus HOM05D003887 ORTHO05D048295 7.6e-07 57.8 35 71.4
Nitab4.5_0006280g0090 Nicotiana tabacum HOM05D003887 ORTHO05D048295 7.6e-07 57.8 38 65.8


User provided reference genes

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