Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 1.9e-159 565.8 303 100.0
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.8e-125 453.0 303 77.6
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 1.4e-117 426.8 310 74.5
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 1.4e-117 426.8 308 76.3
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 3.1e-117 425.6 304 75.0
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 4.1e-117 425.2 313 73.5
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 1.2e-116 423.7 310 74.5
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 4.5e-116 421.8 312 71.8
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 5.9e-116 421.4 313 74.1
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 1.3e-115 420.2 310 73.5
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 2.9e-115 419.1 310 73.9
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 5.0e-115 418.3 305 73.4
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 8.5e-115 417.5 312 70.8
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 1.5e-114 416.8 310 71.9
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 1.5e-114 416.8 282 76.6
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 9.4e-114 414.1 305 72.8
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 9.4e-114 414.1 305 72.8
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 2.7e-113 412.5 311 71.4
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 2.3e-112 409.5 304 71.1
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 2.6e-111 406.0 310 70.6
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 3.3e-111 405.6 314 70.4
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 4.4e-111 405.2 305 71.8
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 4.4e-111 405.2 282 73.8
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 1.3e-110 403.7 306 70.6
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 2.8e-110 402.5 306 70.6
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 4.8e-110 401.7 306 70.6
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 1.4e-109 400.2 313 69.3
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 4.1e-109 398.7 283 73.5
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 4.1e-109 398.7 303 72.6
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 7.0e-109 397.9 303 71.0
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 7.0e-109 397.9 322 67.7
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 4.5e-108 395.2 302 69.9
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 1.0e-107 394.0 303 70.3
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 1.7e-107 393.3 304 70.1
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 2.2e-107 392.9 304 71.4
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 5.0e-107 391.7 252 78.2
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 5.0e-107 391.7 286 71.7
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 8.5e-107 391.0 272 73.2
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.5e-106 390.2 263 74.5
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 1.2e-105 387.1 304 67.4
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.2e-105 387.1 300 70.0
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.2e-105 387.1 300 70.0
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 6.1e-105 384.8 255 76.9
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.3e-104 382.9 303 66.3
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 2.3e-104 382.9 303 66.3
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 2.3e-104 382.9 304 70.1
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 1.2e-103 380.6 303 66.3
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 1.2e-103 380.6 252 73.8
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 2.6e-103 379.4 310 67.1
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 4.4e-103 378.6 303 65.7
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 7.5e-103 377.9 262 72.9
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 7.5e-103 377.9 260 74.6
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 7.5e-103 377.9 302 67.9
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 1.3e-102 377.1 256 72.3
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 3.7e-102 375.6 297 64.3
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 8.3e-102 374.4 303 65.7
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.4e-101 373.6 311 65.6
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 2.4e-101 372.9 305 65.9
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 3.1e-101 372.5 298 64.4
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 3.1e-101 372.5 298 64.4
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 3.1e-101 372.5 297 66.0
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 4.1e-101 372.1 303 65.0
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 4.1e-101 372.1 292 67.5
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 1.6e-100 370.2 295 65.4
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.6e-100 370.2 313 64.9
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 2.0e-100 369.8 299 63.9
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 3.5e-100 369.0 236 76.3
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 4.5e-100 368.6 315 62.2
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 4.5e-100 368.6 298 67.4
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 5.9e-100 368.2 298 64.8
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 7.7e-100 367.9 315 62.9
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 5.0e-99 365.2 252 72.2
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 6.5e-99 364.8 246 74.4
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 1.9e-98 363.2 276 72.5
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 2.5e-98 362.8 302 66.2
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 4.2e-98 362.1 305 62.6
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 7.2e-98 361.3 299 61.9
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 9.5e-98 360.9 308 64.3
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 9.5e-98 360.9 302 65.6
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 9.5e-98 360.9 314 62.1
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.6e-97 360.1 299 61.9
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 2.1e-97 359.8 310 62.6
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.8e-97 359.4 296 63.9
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 2.8e-97 359.4 303 63.4
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 8.0e-97 357.8 305 64.9
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 1.0e-96 357.5 298 62.8
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 1.4e-96 357.1 300 62.3
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 1.8e-96 356.7 306 62.4
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 1.8e-96 356.7 267 69.7
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 2.3e-96 356.3 300 62.3
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.3e-96 356.3 325 63.7
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 5.2e-96 355.1 300 61.7
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 5.2e-96 355.1 302 64.6
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 1.2e-95 354.0 300 62.0
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 1.2e-95 354.0 300 62.0
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 5.7e-95 351.7 302 64.2
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 9.8e-95 350.9 296 62.8
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 1.3e-94 350.5 302 61.3
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 1.3e-94 350.5 236 71.2
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.7e-94 350.1 302 63.9
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 2.2e-94 349.7 263 70.0
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 2.8e-94 349.4 236 73.3
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 4.9e-94 348.6 365 55.6
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 4.9e-94 348.6 309 62.5
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 4.5e-92 342.0 264 68.9
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 5.9e-92 341.7 269 64.3
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 2.3e-91 339.7 306 59.8
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.9e-91 339.3 293 61.4
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 6.6e-91 338.2 394 52.0
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 3.3e-90 335.9 281 61.9
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 4.3e-90 335.5 252 67.1
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 4.3e-90 335.5 288 60.8
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 5.6e-90 335.1 384 53.9
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.8e-89 332.8 382 53.7
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 6.1e-89 331.6 282 62.1
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 5.7e-87 325.1 271 66.4
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 5.7e-87 325.1 283 60.1
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 1.3e-86 323.9 332 53.6
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 3.7e-86 322.4 283 59.4
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 2.4e-85 319.7 256 63.3
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 9.2e-85 317.8 224 72.3
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 9.2e-85 317.8 277 61.7
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 3.5e-84 315.8 241 68.5
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 3.3e-82 309.3 291 58.4
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 6.2e-81 305.1 306 54.6
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 2.6e-79 299.7 240 60.8
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 6.4e-78 295.0 246 58.9
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 1.9e-77 293.5 403 45.2
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 3.5e-76 289.3 263 64.3
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 6.0e-76 288.5 227 66.5
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 3.3e-74 282.7 311 54.0
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 1.3e-67 260.8 222 60.4
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 2.6e-63 246.5 189 73.5
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 5.8e-63 245.4 402 40.8
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 9.9e-63 244.6 251 47.8
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 9.2e-61 238.0 259 52.1
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.2e-60 237.7 239 49.4
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 1.7e-59 233.8 223 57.4
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 6.2e-57 225.3 173 61.8
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 5.8e-55 218.8 255 49.0
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 7.6e-55 218.4 250 46.4
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 1.7e-54 217.2 236 46.6
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 8.4e-54 214.9 143 74.8
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 9.3e-53 211.5 135 76.3
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 1.2e-44 184.5 189 46.6
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 6.2e-41 172.2 124 67.7
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 8.7e-27 125.2 180 43.3
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 1.7e-22 110.9 74 73.0
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 8.5e-22 108.6 88 62.5
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 2.8e-17 93.6 70 67.1
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 2.8e-17 93.6 107 42.1
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 1.0e-14 85.1 76 50.0
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 3.2e-13 80.1 72 58.3
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 6.1e-12 75.9 186 34.4
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 3.0e-11 73.6 52 65.4
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 8.2e-09 65.5 50 68.0
FAN14G4716 Fragaria x ananassa HOM05D004474 ORTHO05D210276 1.2e-07 61.6 41 61.0
Atru.chr4.507 Acer truncatum HOM05D004474 ORTHO05D052242 1.3e-06 58.2 46 71.7
Lj2P366T41 Lonicera japonica HOM05D004474 ORTHO05D005538 8.5e-06 55.5 84 52.4


User provided reference genes

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