Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 0.0e+00 1631.7 820 100.0
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 0.0e+00 1457.6 790 93.4
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 0.0e+00 1314.3 821 79.4
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 0.0e+00 1220.3 820 73.5
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 0.0e+00 1211.1 820 73.3
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 0.0e+00 1186.8 882 68.0
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 0.0e+00 1185.2 823 72.2
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 0.0e+00 1176.4 818 71.4
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 0.0e+00 1176.4 819 71.8
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 0.0e+00 1175.6 821 71.0
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 0.0e+00 1172.9 823 70.8
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 0.0e+00 1168.7 823 70.5
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1167.9 820 70.9
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 0.0e+00 1165.6 823 70.2
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1161.0 820 70.4
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 0.0e+00 1150.6 819 70.0
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 0.0e+00 1146.7 821 69.8
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 0.0e+00 1137.5 820 68.5
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 0.0e+00 1114.8 819 66.8
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 0.0e+00 1113.2 822 68.4
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 0.0e+00 1109.4 822 68.2
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 0.0e+00 1107.0 823 67.8
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 0.0e+00 1092.0 826 67.4
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 0.0e+00 1077.0 822 66.7
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 0.0e+00 1076.6 820 65.6
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 0.0e+00 1075.1 822 64.7
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 6.7e-311 1070.5 822 65.1
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 7.2e-310 1067.0 822 66.1
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 4.7e-309 1064.3 821 65.0
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 8.0e-309 1063.5 820 66.0
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 2.3e-308 1062.0 824 64.7
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 1.5e-307 1059.3 821 66.5
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 2.0e-307 1058.9 820 64.1
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 4.4e-307 1057.7 848 65.0
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 4.4e-307 1057.7 822 65.0
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 5.4e-305 1050.8 820 65.7
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 7.0e-305 1050.4 821 65.8
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 1.0e-303 1046.6 821 65.7
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 3.8e-303 1044.6 820 62.6
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 2.5e-302 1042.0 857 61.8
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 2.1e-301 1038.9 819 64.0
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 2.8e-301 1038.5 831 63.4
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 3.0e-300 1035.0 836 64.5
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 4.0e-300 1034.6 822 65.0
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 8.3e-298 1026.9 821 64.3
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 2.4e-297 1025.4 822 62.4
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 2.0e-296 1022.3 816 62.6
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 1.7e-295 1019.2 816 63.2
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 2.3e-295 1018.8 820 62.8
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 6.6e-295 1017.3 823 62.1
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 1.5e-294 1016.1 821 63.3
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.5e-294 1016.1 884 61.0
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 1.0e-292 1010.0 819 62.4
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 5.2e-292 1007.7 819 62.5
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 5.2e-292 1007.7 817 61.6
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 7.5e-291 1003.8 821 62.7
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 1.3e-290 1003.0 823 61.6
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 1.3e-290 1003.0 832 61.8
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 1.7e-290 1002.7 820 61.2
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 2.9e-290 1001.9 823 61.7
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 4.9e-290 1001.1 819 61.5
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 1.1e-289 1000.0 830 61.8
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 3.2e-289 998.4 825 61.6
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 7.0e-289 997.3 827 62.0
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 9.2e-289 996.9 826 61.5
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 1.6e-288 996.1 819 62.0
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 6.0e-288 994.2 825 62.3
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 1.0e-287 993.4 820 61.6
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 2.8e-285 985.3 827 61.1
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 2.8e-285 985.3 819 61.4
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 1.1e-284 983.4 824 61.0
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 1.4e-284 983.0 824 61.0
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 4.0e-284 981.5 824 60.9
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 1.5e-283 979.5 834 60.6
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 7.5e-283 977.2 826 60.8
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 1.3e-282 976.5 817 60.6
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 6.4e-282 974.2 830 60.1
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 6.6e-279 964.1 819 61.1
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 5.6e-278 961.1 837 60.8
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 3.6e-277 958.4 824 61.4
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 6.2e-277 957.6 831 59.6
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 4.0e-276 954.9 824 60.8
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 4.6e-272 941.4 821 59.4
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 1.9e-270 936.0 821 59.0
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 1.1e-260 903.7 823 57.4
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 1.7e-258 896.3 833 56.8
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.5e-254 883.2 817 56.2
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 3.7e-253 878.6 817 55.6
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 6.2e-253 877.9 588 73.5
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 4.9e-250 868.2 824 55.6
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 1.4e-249 866.7 820 55.2
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 1.0e-247 860.5 818 53.4
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 9.3e-241 837.4 818 53.7
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 8.7e-239 830.9 631 63.9
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 9.7e-230 800.8 822 50.9
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 1.1e-228 797.3 825 51.2
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 1.4e-228 797.0 893 50.6
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 3.8e-226 788.9 745 56.0
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 6.5e-218 761.5 566 66.1
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 5.2e-215 751.9 820 48.9
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 2.7e-195 686.4 825 47.3
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 2.9e-194 682.9 822 46.7
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 3.4e-190 669.5 856 46.3
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 6.3e-189 665.2 829 44.6
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 9.8e-182 641.3 460 68.7
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 1.9e-177 627.1 833 44.9
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 1.8e-159 567.4 826 42.4
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 4.0e-159 566.2 839 38.9
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.2e-155 554.7 479 61.2
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 1.3e-154 551.2 820 43.4
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 5.2e-151 539.3 594 50.0
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 9.9e-150 535.0 678 44.5
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 3.1e-143 513.5 857 38.2
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 4.6e-139 499.6 828 40.3
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 1.0e-138 498.4 835 37.1
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 6.2e-128 462.6 346 67.1
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 1.6e-123 448.0 846 34.3
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 4.7e-107 393.3 391 53.7
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 1.4e-95 355.1 767 32.2
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 5.0e-85 320.1 412 45.1
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 1.1e-63 249.2 280 51.1
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 1.4e-63 248.8 753 29.2
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 9.2e-63 246.1 279 51.3
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 1.7e-61 241.9 279 50.5
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 1.9e-60 238.4 156 74.4
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 5.2e-58 230.3 193 63.7
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 8.3e-56 223.0 214 57.5
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 1.9e-47 195.3 846 24.3
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 9.2e-47 193.0 169 59.8
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 5.8e-41 173.7 138 63.0
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 1.7e-40 172.2 631 26.6
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 5.4e-39 167.2 132 60.6
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 2.8e-35 154.8 128 60.2
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 1.9e-20 105.5 97 57.7
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 1.5e-17 95.9 65 72.3
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 5.8e-17 94.0 63 73.0
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.7e-16 92.4 68 64.7
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 5.5e-15 87.4 111 41.4
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 2.7e-14 85.1 111 41.4
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.0e-13 83.2 95 44.2
CARHR240490 Cardamine hirsuta HOM05D004893 ORTHO05D006320 9.0e-10 70.1 81 44.4
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 1.2e-09 69.7 46 73.9
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 2.0e-09 68.9 46 71.7
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 2.6e-09 68.6 97 40.2
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 8.4e-08 63.5 48 62.5
Actinidia31528 Actinidia chinensis HOM05D004893 ORTHO05D006320 9.3e-07 60.1 36 75.0


User provided reference genes

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