Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.51 Acer truncatum HOM05D005809 ORTHO05D007259 2.8e-132 475.3 248 100.0
Ciclev10009378m.g Citrus clementina HOM05D005809 ORTHO05D007259 8.9e-86 320.9 227 72.2
GSVIVG01023603001 Vitis vinifera HOM05D005809 ORTHO05D007259 8.3e-84 314.3 227 69.6
QL02p093215 Quercus lobata HOM05D005809 ORTHO05D007259 5.4e-83 311.6 229 72.5
Dinv41380 Davidia involucrata HOM05D005809 ORTHO05D007259 2.5e-80 302.8 227 68.3
Dinv43244 Davidia involucrata HOM05D005809 ORTHO05D007259 5.6e-80 301.6 227 68.3
TAR636G3217 Trochodendron aralioides HOM05D005809 ORTHO05D007259 2.1e-79 299.7 228 67.1
CiPaw.15G168900 Carya illinoinensis HOM05D005809 ORTHO05D007259 2.8e-79 299.3 227 68.7
arahy.Tifrunner.gnm1.ann1.46B1EJ Arachis hypogaea HOM05D005809 ORTHO05D007259 1.4e-78 297.0 230 64.3
Thecc.09G030800 Theobroma cacao HOM05D005809 ORTHO05D007259 4.0e-78 295.4 227 68.3
Eucgr.C02542 Eucalyptus grandis HOM05D005809 ORTHO05D007259 5.2e-78 295.0 227 67.0
Prupe.7G262800 Prunus persica HOM05D005809 ORTHO05D007259 1.5e-77 293.5 227 67.8
Eucgr.C02492 Eucalyptus grandis HOM05D005809 ORTHO05D007259 2.0e-77 293.1 227 67.0
Glyma.06G219200 Glycine max HOM05D005809 ORTHO05D007259 2.0e-77 293.1 240 62.1
TWI34G1090 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 5.8e-77 291.6 229 67.2
Gohir.D05G056000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 9.8e-77 290.8 227 66.5
Nn8g39891 Nelumbo nucifera HOM05D005809 ORTHO05D007259 1.3e-76 290.4 228 65.8
Sabra06G0140200 Salix brachista HOM05D005809 ORTHO05D007259 1.3e-76 290.4 228 66.7
CSS0045900 Camellia sinensis var. sinensis HOM05D005809 ORTHO05D007259 2.9e-76 289.3 227 66.1
Gorai.009G057000 Gossypium raimondii HOM05D005809 ORTHO05D007259 3.7e-76 288.9 227 66.1
Lalb_Chr23g0275681 Lupinus albus HOM05D005809 ORTHO05D007259 4.9e-76 288.5 227 64.3
arahy.Tifrunner.gnm1.ann1.Z5GGTZ Arachis hypogaea HOM05D005809 ORTHO05D007259 2.4e-75 286.2 224 63.4
Potri.006G184600 Populus trichocarpa HOM05D005809 ORTHO05D007259 4.1e-75 285.4 229 65.1
Duzib187G1947 Durio zibethinus HOM05D005809 ORTHO05D007259 1.2e-74 283.9 227 66.1
Hma1.2p1_0222F.1_g093550 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 2.1e-74 283.1 227 64.8
MELO3C004136.2 Cucumis melo HOM05D005809 ORTHO05D007259 2.7e-74 282.7 227 64.3
TWI32G0918 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 4.6e-74 282.0 226 64.6
Ca_03733_v3 Cicer arietinum L. HOM05D005809 ORTHO05D007259 6.0e-74 281.6 229 63.3
Lj6g0016819 Lotus japonicus HOM05D005809 ORTHO05D007259 7.8e-74 281.2 227 63.0
PGSC0003DMG401011139 Solanum tuberosum HOM05D005809 ORTHO05D007259 7.8e-74 281.2 227 64.8
CsaV3_2G007490 Cucumis sativus L. HOM05D005809 ORTHO05D007259 1.3e-73 280.4 227 63.9
COL.COLO4_18808 Corchorus olitorius HOM05D005809 ORTHO05D007259 1.7e-73 280.0 227 62.6
MD02G1007700 Malus domestica HOM05D005809 ORTHO05D007259 1.1e-72 277.3 227 64.3
Duzib168G0271 Durio zibethinus HOM05D005809 ORTHO05D007259 1.5e-72 276.9 224 66.5
Solyc07g005640.3 Solanum lycopersicum HOM05D005809 ORTHO05D007259 2.5e-72 276.2 228 63.6
Sed0001225 Sechium edule HOM05D005809 ORTHO05D007259 4.3e-72 275.4 227 62.1
Medtr2g460780 Medicago truncatula HOM05D005809 ORTHO05D007259 5.6e-72 275.0 228 61.8
Sopen07g001740 Solanum pennellii HOM05D005809 ORTHO05D007259 5.6e-72 275.0 228 62.7
Phvul.009G195100 Phaseolus vulgaris HOM05D005809 ORTHO05D007259 1.2e-71 273.9 227 61.2
Glyma.06G219400 Glycine max HOM05D005809 ORTHO05D007259 2.8e-71 272.7 227 62.1
CANSAT11G2656 Cannabis sativa HOM05D005809 ORTHO05D007259 3.6e-71 272.3 228 63.2
RcHm_v2.0_Chr2g0085671 Rosa chinensis HOM05D005809 ORTHO05D007259 6.2e-71 271.6 227 65.6
Aa31LG3G13770 Aethionema arabicum HOM05D000853 ORTHO05D000723 1.1e-70 270.8 237 60.3
AL8G34030 Arabidopsis lyrata HOM05D005809 ORTHO05D007259 1.1e-70 270.8 229 62.4
CARHR271730 Cardamine hirsuta HOM05D005809 ORTHO05D007259 1.1e-70 270.8 227 62.1
Cpa.g.sc46.154 Carica papaya HOM05D005809 ORTHO05D007259 1.1e-70 270.8 238 61.3
Manes.06G033951 Manihot esculenta HOM05D005809 ORTHO05D007259 1.1e-70 270.8 229 62.9
TPR.G20735 Trifolium pratense HOM05D005809 ORTHO05D007259 1.4e-70 270.4 229 62.9
Thhalv10014592m.g Eutrema salsugineum HOM05D005809 ORTHO05D007259 5.2e-70 268.5 225 62.2
PGR102G1797 Punica granatum HOM05D005809 ORTHO05D007259 6.8e-70 268.1 227 63.9
Sp6g19620 Schrenkiella parvula HOM05D005809 ORTHO05D007259 8.9e-70 267.7 227 61.2
FvH4_1g00940 Fragaria vesca HOM05D005809 ORTHO05D007259 1.5e-69 266.9 225 64.4
BraA10t43609Z Brassica rapa HOM05D005809 ORTHO05D007259 2.0e-69 266.5 227 62.6
SalBow1G5910 Salvia bowleyana HOM05D005809 ORTHO05D007259 5.8e-69 265.0 240 57.5
THA.LOC104817821 Tarenaya hassleriana HOM05D005809 ORTHO05D007259 9.9e-69 264.2 228 63.6
AT5G57950 Arabidopsis thaliana HOM05D005809 ORTHO05D007259 1.3e-68 263.8 227 62.1
Oeu052197.1 Olea europaea HOM05D005809 ORTHO05D007259 1.7e-68 263.5 227 61.7
MSTRG.19648 Avicennia marina HOM05D005809 ORTHO05D007259 2.9e-68 262.7 227 61.2
A10p16200 Brassica napus HOM05D005809 ORTHO05D007259 3.7e-68 262.3 227 62.6
Carub.0008s1848 Capsella rubella HOM05D005809 ORTHO05D007259 3.7e-68 262.3 227 59.5
CAN.G160.58 Capsicum annuum HOM05D005809 ORTHO05D007259 1.4e-67 260.4 235 62.1
Migut.J01341 Erythranthe guttata HOM05D005809 ORTHO05D007259 1.9e-67 260.0 227 59.0
Peaxi162Scf00401g00082 Petunia axillaris HOM05D005809 ORTHO05D007259 1.9e-67 260.0 217 62.7
FAN23G2666 Fragaria x ananassa HOM05D005809 ORTHO05D007259 3.2e-67 259.2 227 63.0
Psat1g021800 Pisum sativum HOM05D005809 ORTHO05D007259 3.2e-67 259.2 227 59.5
vmacro16802 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 3.2e-67 259.2 281 52.7
Rhsim01G0033400 Rhododendron simsii HOM05D005809 ORTHO05D007259 1.6e-66 256.9 225 59.6
Sc08g0005640 Simmondsia chinensis HOM05D005809 ORTHO05D007259 4.6e-66 255.4 227 58.1
Haze_19206 Corylus avellana HOM05D005809 ORTHO05D007259 3.9e-65 252.3 225 61.3
BolC9t57830H Brassica oleracea HOM05D005809 ORTHO05D007259 1.5e-64 250.4 227 59.9
Aqoxy2G02328 Aquilegia oxysepala HOM05D005809 ORTHO05D007259 1.9e-64 250.0 227 55.9
C09p49790 Brassica napus HOM05D005809 ORTHO05D007259 2.5e-64 249.6 227 59.9
ClCG02G014530 Citrullus lanatus HOM05D005809 ORTHO05D007259 3.3e-64 249.2 212 60.8
HanXRQChr17g0552351 Helianthus annuus HOM05D005809 ORTHO05D007259 5.6e-64 248.4 228 61.4
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 3.6e-63 245.7 227 55.5
PSO782G1751 Papaver somniferum HOM05D005809 ORTHO05D007259 1.4e-62 243.8 227 54.6
ATR0739G206 Amborella trichopoda HOM05D005809 ORTHO05D007259 1.8e-62 243.4 229 58.1
Ah.02g128190 Amaranthus hybridus HOM05D005809 ORTHO05D007259 2.4e-62 243.0 227 56.4
PSO063G2086 Papaver somniferum HOM05D005809 ORTHO05D007259 5.2e-62 241.9 227 54.2
Gohir.A05G055000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 6.8e-62 241.5 232 58.6
Nitab4.5_0001571g0010 Nicotiana tabacum HOM05D005809 ORTHO05D007259 1.2e-61 240.7 233 55.8
SGA_v2.0_scaffold265G46107 Striga asiatica HOM05D005809 ORTHO05D007259 1.2e-61 240.7 224 57.1
Lsat_1_v5_gn_8_63301 Lactuca sativa HOM05D005809 ORTHO05D007259 9.9e-61 237.7 243 54.7
Nitab4.5_0005653g0040 Nicotiana tabacum HOM05D005809 ORTHO05D007259 1.7e-60 236.9 227 55.9
Actinidia04301 Actinidia chinensis HOM05D005809 ORTHO05D007259 2.4e-59 233.0 227 55.5
ECA247G0266 Erigeron canadensis HOM05D005809 ORTHO05D007259 3.2e-59 232.6 228 56.1
HPP92_016019 Vanilla planifolia HOM05D005809 ORTHO05D007259 1.9e-56 223.4 227 52.9
DCAR_017909 Daucus carota HOM05D005809 ORTHO05D007259 3.3e-56 222.6 273 48.7
Os09g0420600 Oryza sativa ssp. japonica HOM05D005809 ORTHO05D007259 1.1e-54 217.6 227 51.1
SEGI_31268 Sequoiadendron giganteum HOM05D005809 ORTHO05D007259 2.6e-53 213.0 225 52.0
Zm00001eb312980 Zea mays HOM05D005809 ORTHO05D007259 4.4e-53 212.2 227 51.1
vmacro05441 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 5.8e-53 211.8 206 55.3
Hund01517 Selenicereus undatus HOM05D005809 ORTHO05D007259 1.9e-51 206.8 225 51.6
FAN28G0834 Fragaria x ananassa HOM05D005809 ORTHO05D007259 9.3e-51 204.5 233 52.8
Dinv42856 Davidia involucrata HOM05D005809 ORTHO05D007259 1.2e-50 204.1 161 65.8
Pp3c8_2960 Physcomitrium patens HOM05D005809 ORTHO05D007259 1.6e-50 203.8 234 48.3
HPP92_016035 Vanilla planifolia HOM05D005809 ORTHO05D007259 1.6e-50 203.8 208 52.4
CDE12G0564 Ceratophyllum demersum HOM05D005809 ORTHO05D007259 2.1e-50 203.4 254 46.5
Lj9C717G7 Lonicera japonica HOM05D005809 ORTHO05D007259 3.9e-49 199.1 225 50.2
Mapoly0003s0072 Marchantia polymorpha HOM05D005809 ORTHO05D007259 1.1e-48 197.6 231 47.6
AagrBONN_evm.TU.Sc2ySwM_117.3948 Anthoceros agrestis HOM05D005809 ORTHO05D007259 4.3e-48 195.7 220 48.2
SMO361G0248 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 2.8e-47 193.0 225 47.6
SMO361G0343 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 8.1e-47 191.4 225 47.1
Actinidia38322 Actinidia chinensis HOM05D005809 ORTHO05D007259 1.1e-46 191.0 166 62.7
Pp3c16_13530 Physcomitrium patens HOM05D005809 ORTHO05D007259 2.4e-46 189.9 222 46.4
Hma1.2p1_0010F.1_g006710 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 4.5e-45 185.7 165 59.4
SHI02853 Sapria himalayana HOM05D005809 ORTHO05D007259 3.2e-43 179.5 219 47.0
Sed0002126 Sechium edule HOM05D005809 ORTHO05D007259 2.1e-42 176.8 162 58.6
AUR62035200 Chenopodium quinoa HOM05D005809 ORTHO05D007259 6.0e-42 175.3 229 44.5
Cc06_g14990 Coffea canephora HOM05D005809 ORTHO05D007259 7.1e-35 151.8 96 74.0
CBR_g38078 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-31 140.6 262 32.1
Aa31LG1G19310 Aethionema arabicum HOM05D005809 ORTHO05D007259 2.6e-29 133.3 93 69.9
EL10As1g23143 Beta vulgaris HOM05D005809 ORTHO05D007259 4.5e-29 132.5 130 54.6
FAN21G3780 Fragaria x ananassa HOM05D005809 ORTHO05D007259 3.2e-27 126.3 194 44.3
RcHm_v2.0_Chr5g0031291 Rosa chinensis HOM05D005809 ORTHO05D007259 3.2e-27 126.3 141 53.9
Cc06_g14980 Coffea canephora HOM05D005809 ORTHO05D007259 1.3e-25 120.9 104 60.6
FAN25G0559 Fragaria x ananassa HOM05D005809 ORTHO05D007259 4.3e-24 115.9 115 55.7
MCO13G469 Micromonas commoda HOM05D005809 ORTHO05D007259 4.3e-24 115.9 220 32.7
Oeu049715.1 Olea europaea HOM05D005809 ORTHO05D007259 1.5e-21 107.5 117 48.7
Oeu038698.1 Olea europaea HOM05D005809 ORTHO05D007259 1.0e-20 104.8 117 47.9
Oeu007777.1 Olea europaea HOM05D005809 ORTHO05D007259 2.2e-20 103.6 117 47.9
Oeu017561.1 Olea europaea HOM05D005809 ORTHO05D007259 3.8e-20 102.8 117 47.9
PRCOL_00000214 Prasinoderma coloniale HOM05D005809 ORTHO05D007259 4.6e-18 95.9 196 32.1
Cre04.g226950 Chlamydomonas reinhardtii HOM05D005809 ORTHO05D007259 3.0e-17 93.2 270 27.0
Hma1.2p1_0222F.1_g093570 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 5.1e-17 92.4 74 64.9
FvH4_3g18530 Fragaria vesca HOM05D005809 ORTHO05D007259 1.5e-16 90.9 168 39.3
FAN11G2737 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.5e-16 90.9 168 39.3
MD09G1175000 Malus domestica HOM05D005809 ORTHO05D007259 1.5e-16 90.9 93 58.1
EL10As1g23140 Beta vulgaris HOM05D005809 ORTHO05D007259 2.2e-15 87.0 63 65.1
FAN26G2229 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.1e-14 84.7 58 69.0
Oeu029241.1 Olea europaea HOM05D005809 ORTHO05D007259 1.1e-14 84.7 103 43.7
CSS0015204 Camellia sinensis var. sinensis HOM05D000853 ORTHO05D000723 3.4e-13 79.7 75 58.7
vmacro11582 Vaccinium macrocarpon HOM05D005809 ORTHO05D010075 3.0e-09 66.6 54 61.1


User provided reference genes

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