Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 0.0e+00 1138.3 577 100.0
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 4.8e-252 874.4 540 80.4
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 1.2e-239 833.2 514 78.8
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 6.8e-238 827.4 551 73.1
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 1.2e-234 816.6 518 77.2
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 3.5e-234 815.1 501 78.4
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 5.9e-234 814.3 512 77.5
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 1.9e-232 809.3 543 74.0
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 4.7e-231 804.7 511 75.9
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.1e-230 803.5 512 75.4
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 6.8e-230 800.8 512 75.4
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 2.0e-229 799.3 516 75.2
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 5.8e-229 797.7 511 76.7
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.3e-228 796.6 519 74.4
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 3.7e-228 795.0 516 73.6
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 6.4e-228 794.3 513 75.0
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 6.4e-228 794.3 542 72.1
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 8.3e-228 793.9 525 74.3
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 3.2e-227 792.0 519 74.4
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 1.6e-226 789.6 507 74.2
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 3.5e-226 788.5 512 75.8
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 3.0e-225 785.4 511 73.8
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.9e-224 782.7 526 73.2
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 7.3e-224 780.8 516 73.6
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 1.2e-223 780.0 543 69.4
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 6.8e-222 774.2 512 71.7
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 1.2e-221 773.5 516 75.0
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 2.9e-220 768.8 542 70.7
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 1.4e-219 766.5 523 71.1
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 3.2e-219 765.4 510 72.5
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 5.4e-219 764.6 510 69.4
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 2.1e-218 762.7 508 72.4
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 2.1e-218 762.7 511 72.4
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 2.3e-217 759.2 527 69.4
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 1.9e-216 756.1 505 72.1
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 3.3e-216 755.4 497 72.2
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 3.3e-216 755.4 535 68.2
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 4.3e-216 755.0 503 72.6
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 7.3e-216 754.2 513 71.7
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 2.1e-215 752.7 520 69.0
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 4.7e-215 751.5 519 69.0
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 6.2e-215 751.1 514 69.3
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 6.2e-215 751.1 499 71.1
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 1.8e-214 749.6 520 71.9
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 3.1e-214 748.8 537 66.1
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 4.0e-214 748.4 504 70.4
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 4.4e-213 745.0 511 68.9
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 7.6e-213 744.2 544 66.9
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 7.6e-213 744.2 520 68.5
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 1.7e-212 743.0 502 72.3
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 6.4e-212 741.1 502 69.5
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 1.1e-211 740.3 510 71.0
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 3.2e-211 738.8 516 70.5
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.2e-211 738.8 516 70.3
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 1.6e-210 736.5 507 69.4
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 2.7e-210 735.7 516 70.2
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 1.7e-209 733.0 521 68.7
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 1.7e-209 733.0 524 71.2
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 2.3e-209 732.6 503 70.8
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 5.1e-209 731.5 555 65.4
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 8.7e-209 730.7 553 64.2
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 1.1e-208 730.3 513 68.2
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 1.5e-208 729.9 505 69.3
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 2.5e-208 729.2 512 67.2
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 7.3e-208 727.6 507 68.8
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 7.3e-208 727.6 511 70.1
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 2.8e-207 725.7 527 68.5
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 2.8e-207 725.7 487 71.5
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 4.7e-207 724.9 503 68.2
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 8.1e-207 724.2 516 69.4
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 9.0e-206 720.7 434 78.8
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 9.0e-206 720.7 507 67.3
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 1.2e-205 720.3 515 67.6
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 1.5e-205 719.9 513 69.6
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 1.3e-204 716.8 540 65.2
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 1.7e-204 716.5 516 68.2
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 4.9e-204 714.9 506 68.8
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 4.9e-204 714.9 499 69.3
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 1.1e-203 713.8 485 70.7
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 1.9e-203 713.0 514 68.1
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 1.7e-201 706.4 487 70.8
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 2.4e-198 696.0 464 70.9
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 4.0e-198 695.3 498 67.5
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 6.4e-196 688.0 492 68.9
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 3.0e-193 679.1 509 63.3
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 4.3e-192 675.2 425 79.1
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 1.1e-190 670.6 505 63.2
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 1.4e-187 660.2 514 62.5
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 4.3e-176 622.1 492 62.0
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 8.2e-175 617.8 628 51.4
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 3.1e-174 615.9 420 72.4
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 2.5e-171 606.3 501 59.5
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 7.2e-171 604.7 427 66.5
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 3.1e-166 589.3 545 52.5
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 2.5e-163 579.7 390 72.1
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 3.0e-161 572.8 375 75.2
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 3.0e-161 572.8 420 68.1
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 7.4e-160 568.2 527 52.4
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 7.4e-160 568.2 527 52.4
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 1.3e-156 557.4 381 70.6
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 3.2e-155 552.7 476 54.4
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 4.2e-155 552.4 443 61.6
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 1.3e-151 540.8 383 70.8
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 2.4e-150 536.6 317 79.2
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 1.2e-146 524.2 378 66.1
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 9.1e-142 508.1 514 54.5
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.0e-136 490.3 476 57.4
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 3.8e-132 476.1 487 52.0
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 1.7e-127 460.7 505 50.9
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 7.3e-123 445.3 434 56.7
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 1.3e-116 424.5 282 73.0
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 5.1e-92 342.8 443 42.2
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 1.5e-80 304.7 228 66.2
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.9e-75 287.7 235 62.6
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 5.3e-65 253.1 189 66.7
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 3.1e-57 227.3 198 60.6
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 1.0e-52 212.2 142 73.2
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 7.4e-51 206.1 166 62.0
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 1.0e-47 195.7 125 73.6
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 3.2e-46 190.7 127 67.7
Psat4g010400 Pisum sativum HOM05D005919 ORTHO05D007176 3.6e-45 187.2 128 69.5
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 2.3e-44 184.5 127 65.4
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 1.7e-39 168.3 497 27.6
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 2.4e-33 147.9 133 58.6
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 8.5e-31 139.4 108 63.0
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 8.5e-31 139.4 108 63.0
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 8.5e-31 139.4 108 63.0
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 5.2e-28 130.2 90 67.8
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 2.5e-22 111.3 75 65.3
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 8.8e-20 102.8 86 59.3
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 1.8e-17 95.1 79 59.5
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 2.0e-11 75.1 292 27.4
Psat4g048040 Pisum sativum HOM05D005919 ORTHO05D007176 7.5e-11 73.2 42 73.8
CDE02G2871 Ceratophyllum demersum HOM05D006213 ORTHO05D008107 1.5e-06 58.9 286 22.0
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 1.9e-06 58.5 126 32.5
MSTRG.20674 Avicennia marina HOM05D006213 ORTHO05D008107 2.5e-06 58.2 126 31.0
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 5.6e-06 57.0 187 24.1
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 5.6e-06 57.0 127 30.7
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 7.3e-06 56.6 356 25.3


User provided reference genes

Program Settings