Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 1.5e-206 722.6 359 100.0
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 2.9e-138 495.7 361 71.7
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 2.7e-128 462.6 356 66.3
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 3.3e-126 455.7 359 66.3
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 1.3e-125 453.8 359 66.9
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 4.8e-125 451.8 355 65.4
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 1.1e-124 450.7 357 66.4
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 1.0e-122 444.1 329 68.4
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.3e-122 443.7 359 63.5
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 4.2e-121 438.7 330 68.2
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 4.7e-120 435.3 361 62.6
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 1.0e-119 434.1 365 63.0
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 4.4e-118 428.7 344 64.0
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 7.5e-118 427.9 368 61.7
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 8.3e-117 424.5 351 62.4
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 1.1e-116 424.1 323 65.9
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 1.4e-116 423.7 323 66.3
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.8e-116 423.3 358 63.7
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 4.1e-116 422.2 357 62.5
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 1.2e-115 420.6 359 59.6
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 2.0e-115 419.9 361 62.9
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 5.0e-114 415.2 359 59.1
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 6.5e-114 414.8 355 61.1
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 1.9e-113 413.3 279 72.8
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 1.9e-113 413.3 300 68.3
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 1.0e-111 407.5 363 59.8
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.4e-111 407.1 351 62.4
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 3.0e-111 406.0 360 60.0
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 3.0e-111 406.0 351 60.4
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 4.0e-111 405.6 356 60.4
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 8.8e-111 404.4 351 62.4
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 8.8e-111 404.4 359 57.9
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 1.5e-110 403.7 360 57.8
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 3.4e-110 402.5 358 60.6
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 4.4e-110 402.1 356 58.1
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 4.4e-110 402.1 325 64.3
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 4.4e-110 402.1 355 60.8
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 4.4e-110 402.1 300 66.7
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 2.2e-109 399.8 302 67.2
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 2.2e-109 399.8 354 58.5
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 2.8e-109 399.4 279 71.7
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 4.8e-109 398.7 315 64.4
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 6.3e-109 398.3 316 63.6
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 4.1e-108 395.6 316 63.6
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 7.0e-108 394.8 423 53.7
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 1.2e-107 394.0 320 61.2
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 2.0e-107 393.3 297 68.4
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 2.7e-107 392.9 336 61.0
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 1.0e-106 391.0 341 58.7
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 1.7e-106 390.2 284 68.0
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 2.3e-106 389.8 281 68.0
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 2.3e-106 389.8 380 54.7
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 2.9e-106 389.4 355 57.5
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 2.9e-106 389.4 299 64.5
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 3.8e-106 389.0 293 64.2
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 5.0e-106 388.7 298 63.8
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 2.5e-105 386.3 302 63.2
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 2.5e-105 386.3 304 65.5
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 3.3e-105 386.0 363 57.3
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 4.2e-105 385.6 298 64.1
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 5.5e-105 385.2 265 68.3
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 9.5e-105 384.4 307 62.9
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 1.2e-104 384.0 358 56.4
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 2.1e-104 383.3 275 68.0
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 3.6e-104 382.5 307 62.2
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 1.4e-103 380.6 358 54.7
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 2.3e-103 379.8 275 69.8
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 3.0e-103 379.4 263 71.1
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 6.8e-103 378.3 358 54.7
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 8.9e-103 377.9 343 58.3
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 8.9e-103 377.9 264 69.3
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 8.9e-103 377.9 264 69.3
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 8.9e-103 377.9 314 62.4
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 1.2e-102 377.5 352 59.1
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 1.5e-102 377.1 274 66.8
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 3.4e-102 375.9 272 67.3
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 4.4e-102 375.6 264 68.6
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 1.3e-101 374.0 259 68.7
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 1.3e-101 374.0 267 68.5
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 2.2e-101 373.2 271 68.3
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 2.2e-101 373.2 290 62.8
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.2e-101 373.2 268 69.4
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 4.9e-101 372.1 282 64.9
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 4.9e-101 372.1 293 62.1
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 4.9e-101 372.1 278 64.7
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 8.3e-101 371.3 450 49.1
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 1.1e-100 370.9 269 68.0
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 4.1e-100 369.0 266 68.8
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 1.0e-98 364.4 314 57.0
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 1.3e-98 364.0 264 67.0
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 6.6e-98 361.7 239 72.0
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 5.6e-97 358.6 211 81.5
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 1.6e-96 357.1 245 70.6
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 1.6e-96 357.1 264 67.8
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 1.0e-95 354.4 284 64.1
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 3.1e-95 352.8 260 66.2
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 3.4e-94 349.4 269 63.9
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 7.5e-94 348.2 239 69.9
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 2.4e-92 343.2 250 68.4
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 4.1e-92 342.4 278 63.7
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.0e-90 337.8 273 60.1
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.3e-90 337.4 273 60.1
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 3.9e-90 335.9 215 74.9
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 6.6e-90 335.1 296 57.4
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 8.0e-88 328.2 289 57.1
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 6.0e-83 312.0 352 53.1
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 2.5e-81 306.6 309 55.0
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 8.3e-77 291.6 182 76.4
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 7.1e-76 288.5 235 59.6
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 1.2e-75 287.7 190 70.5
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 1.6e-75 287.3 248 59.3
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 1.1e-68 264.6 275 49.8
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 5.1e-66 255.8 210 58.6
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 8.4e-61 238.4 233 51.5
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 9.0e-55 218.4 233 46.4
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 4.5e-54 216.1 270 45.6
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 2.9e-53 213.4 212 53.3
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 1.0e-50 204.9 212 49.5
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 3.9e-50 203.0 119 81.5
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 3.2e-44 183.3 124 71.8
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 1.8e-34 151.0 186 44.6
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.2e-24 117.5 83 65.1
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 8.5e-21 105.5 68 76.5
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 1.0e-18 98.6 68 69.1
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 5.7e-17 92.8 61 70.5
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 5.7e-17 92.8 61 70.5
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 6.3e-16 89.4 160 35.6
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 5.3e-15 86.3 161 34.2
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 9.1e-15 85.5 78 60.3
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 1.0e-13 82.0 171 34.5
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 1.5e-12 78.2 256 30.1
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 3.2e-12 77.0 63 61.9
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 3.2e-12 77.0 189 29.6
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 4.2e-12 76.6 124 33.9
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 5.5e-12 76.3 189 30.7
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 5.5e-12 76.3 181 31.5
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 9.4e-12 75.5 189 30.7
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 2.1e-11 74.3 182 32.4
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 2.1e-11 74.3 116 36.2
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 2.1e-11 74.3 130 34.6
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 2.1e-11 74.3 130 34.6
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 2.7e-11 73.9 193 30.1
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 2.7e-11 73.9 189 30.2
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 2.7e-11 73.9 222 29.3
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 2.7e-11 73.9 184 31.5
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 3.6e-11 73.6 189 29.6
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 3.6e-11 73.6 130 34.6
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 4.7e-11 73.2 230 30.9
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 4.7e-11 73.2 200 30.0
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 1.0e-10 72.0 230 30.4
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 1.0e-10 72.0 179 30.7
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 1.0e-10 72.0 163 31.9
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 1.8e-10 71.2 116 35.3
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 2.3e-10 70.9 183 32.2
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 3.0e-10 70.5 192 30.2
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 3.9e-10 70.1 184 29.9
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 3.9e-10 70.1 184 29.9
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 5.2e-10 69.7 184 29.9
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 8.8e-10 68.9 184 28.3
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 1.1e-09 68.6 189 30.7
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 2.0e-09 67.8 195 27.7
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 2.6e-09 67.4 189 29.6
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 2.6e-09 67.4 189 28.6
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 3.3e-09 67.0 217 26.7
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 4.4e-09 66.6 191 28.8
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 5.7e-09 66.2 183 30.6
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 5.7e-09 66.2 189 25.9
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 9.7e-09 65.5 137 33.6
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 2.2e-08 64.3 123 32.5
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 6.3e-08 62.8 195 26.7
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 8.2e-08 62.4 107 31.8
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.1e-07 62.0 241 24.5
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 4.1e-07 60.1 181 28.7
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 5.3e-07 59.7 96 36.5
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 5.3e-07 59.7 185 27.6
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 9.1e-07 58.9 90 35.6
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 1.6e-06 58.2 162 30.9
Carub.0003s0480 Capsella rubella HOM05D002832 ORTHO05D008667 2.6e-06 57.4 199 30.7
EL10Ac1g01762 Beta vulgaris HOM05D003844 ORTHO05D004534 3.5e-06 57.0 207 25.6
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 3.5e-06 57.0 235 23.8
AUR62033852 Chenopodium quinoa HOM05D003844 ORTHO05D004534 5.9e-06 56.2 195 26.2
Sed0016733 Sechium edule HOM05D002832 ORTHO05D008667 5.9e-06 56.2 194 29.4


User provided reference genes

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