Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.366 Acer truncatum HOM05D000045 ORTHO05D003357 5.0e-66 254.2 121 100.0
Atru.chr3.3230 Acer truncatum HOM05D000045 ORTHO05D003357 1.1e-52 209.9 120 80.8
Atru.chr1.2070 Acer truncatum HOM05D000045 ORTHO05D000067 1.0e-31 140.2 119 57.1
Atru.chr5.1895 Acer truncatum HOM05D000045 ORTHO05D003357 7.8e-27 124.0 70 81.4
Atru.chr12.1212 Acer truncatum HOM05D000045 ORTHO05D000067 9.8e-14 80.5 119 36.1
Atru.chr8.675 Acer truncatum HOM05D000045 ORTHO05D003357 9.8e-14 80.5 73 53.4
FvH4_4g28751 Fragaria vesca HOM05D000045 ORTHO05D003357 2.9e-13 79.0 123 36.6
FAN03G2544 Fragaria x ananassa HOM05D016452 ORTHO05D003357 1.4e-12 76.6 123 35.8
Atru.chr4.215 Acer truncatum HOM05D000045 ORTHO05D003357 2.4e-12 75.9 119 32.8
Atru.chr4.254 Acer truncatum HOM05D000045 ORTHO05D003357 3.2e-12 75.5 119 32.8
TPR.G16489 Trifolium pratense HOM05D000590 ORTHO05D006658 1.6e-11 73.2 119 32.8
TPR.G24612 Trifolium pratense HOM05D000045 ORTHO05D003357 2.1e-11 72.8 119 33.6
RcHm_v2.0_Chr6g0251121 Rosa chinensis HOM05D000045 ORTHO05D011574 4.6e-11 71.6 122 29.5
Ciclev10003988m.g Citrus clementina HOM05D000045 ORTHO05D000067 6.0e-11 71.2 109 32.1
Ciclev10003951m.g Citrus clementina HOM05D000045 ORTHO05D000067 2.3e-10 69.3 109 31.2
RcHm_v2.0_Chr2g0162591 Rosa chinensis HOM05D005194 ORTHO05D003357 2.3e-10 69.3 120 33.3
Rhsim01G0208000 Rhododendron simsii HOM05D000045 ORTHO05D000067 6.6e-10 67.8 118 30.5
Atru.chr13.1929 Acer truncatum HOM05D000045 ORTHO05D000067 8.6e-10 67.4 114 33.3
FvH4_7g03535 Fragaria vesca HOM05D000045 ORTHO05D003357 8.6e-10 67.4 125 33.6
Rhsim11G0186200 Rhododendron simsii HOM05D000045 ORTHO05D000067 8.6e-10 67.4 120 31.7
RcHm_v2.0_Chr3g0476211 Rosa chinensis HOM05D000045 ORTHO05D000067 8.6e-10 67.4 120 32.5
Rhsim02G0142300 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.1e-09 67.0 120 32.5
Rhsim02G0102200 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.5e-09 66.6 115 32.2
FvH4_2g00731 Fragaria vesca HOM05D000045 ORTHO05D011574 1.9e-09 66.2 122 28.7
Rhsim04G0161500 Rhododendron simsii HOM05D000045 ORTHO05D000067 4.3e-09 65.1 118 31.4
FvH4_3g26554 Fragaria vesca HOM05D000045 ORTHO05D012261 9.5e-09 63.9 125 32.0
FvH4_5g24054 Fragaria vesca HOM05D000045 ORTHO05D003357 9.5e-09 63.9 125 32.8
TPR.G9545 Trifolium pratense HOM05D000045 ORTHO05D000067 9.5e-09 63.9 119 30.3
Atru.chr3.1745 Acer truncatum HOM05D000045 ORTHO05D000067 1.6e-08 63.2 87 36.8
Prupe.7G011500 Prunus persica HOM05D005194 ORTHO05D003357 1.6e-08 63.2 81 38.3
FvH4_7g31230 Fragaria vesca HOM05D000045 ORTHO05D000067 2.8e-08 62.4 108 33.3
Rhsim03G0160300 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.8e-08 62.4 118 30.5
CANSAT01G1937 Cannabis sativa HOM05D000045 ORTHO05D000067 3.6e-08 62.0 124 28.2
arahy.Tifrunner.gnm1.ann1.UU22QK Arachis hypogaea HOM05D005194 ORTHO05D003357 4.7e-08 61.6 83 33.7
arahy.Tifrunner.gnm1.ann1.KJ2SKP Arachis hypogaea HOM05D005194 ORTHO05D003357 6.2e-08 61.2 83 33.7
CANSAT64G0571 Cannabis sativa HOM05D000045 ORTHO05D003357 6.2e-08 61.2 123 27.6
arahy.Tifrunner.gnm1.ann1.TE78DL Arachis hypogaea HOM05D005194 ORTHO05D003357 8.1e-08 60.8 83 33.7
FvH4_5g30671 Fragaria vesca HOM05D000045 ORTHO05D003357 8.1e-08 60.8 124 33.9
FAN04G0167 Fragaria x ananassa HOM05D016452 ORTHO05D003357 8.1e-08 60.8 99 34.3
FAN14G4534 Fragaria x ananassa HOM05D016452 ORTHO05D003357 8.1e-08 60.8 99 34.3
arahy.Tifrunner.gnm1.ann1.F3EUUB Arachis hypogaea HOM05D005194 ORTHO05D003357 1.4e-07 60.1 83 32.5
CANSAT21G1115 Cannabis sativa HOM05D000045 ORTHO05D000067 1.4e-07 60.1 121 29.8
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 1.4e-07 60.1 122 32.8
CANSAT25G0535 Cannabis sativa HOM05D000045 ORTHO05D000067 1.8e-07 59.7 114 30.7
CANSAT35G0973 Cannabis sativa HOM05D000045 ORTHO05D000067 2.3e-07 59.3 121 28.9
CANSAT54G0188 Cannabis sativa HOM05D000045 ORTHO05D000067 3.1e-07 58.9 121 28.9
CANSAT80G1400 Cannabis sativa HOM05D000045 ORTHO05D000067 3.1e-07 58.9 121 28.9
Prupe.2G034100 Prunus persica HOM05D000045 ORTHO05D000067 3.1e-07 58.9 76 35.5
CANSAT21G0088 Cannabis sativa HOM05D000045 ORTHO05D003357 4.0e-07 58.5 121 28.9
AUR62036571 Chenopodium quinoa HOM05D000045 ORTHO05D000067 4.0e-07 58.5 102 31.4
arahy.Tifrunner.gnm1.ann1.RDS1N3 Arachis hypogaea HOM05D005194 ORTHO05D003357 5.2e-07 58.2 83 32.5
arahy.Tifrunner.gnm1.ann1.RPVA7B Arachis hypogaea HOM05D000045 ORTHO05D000067 5.2e-07 58.2 117 28.2
FvH4_4g10123 Fragaria vesca HOM05D016452 ORTHO05D003357 5.2e-07 58.2 99 33.3
arahy.Tifrunner.gnm1.ann1.U80MXJ Arachis hypogaea HOM05D000045 ORTHO05D000067 6.8e-07 57.8 83 31.3
arahy.Tifrunner.gnm1.ann1.YPLZ25 Arachis hypogaea HOM05D000045 ORTHO05D000067 6.8e-07 57.8 117 27.4
RcHm_v2.0_Chr5g0039441 Rosa chinensis HOM05D000045 ORTHO05D011574 6.8e-07 57.8 87 28.7
arahy.Tifrunner.gnm1.ann1.3JTY54 Arachis hypogaea HOM05D005194 ORTHO05D003357 1.2e-06 57.0 83 30.1
RcHm_v2.0_Chr6g0246161 Rosa chinensis HOM05D000045 ORTHO05D011574 1.2e-06 57.0 89 30.3
Solyc12g011027.1 Solanum lycopersicum HOM05D000045 ORTHO05D000067 1.2e-06 57.0 109 28.4
Solyc03g082435.1 Solanum lycopersicum HOM05D000045 ORTHO05D000067 1.5e-06 56.6 109 28.4
Solyc04g070995.1 Solanum lycopersicum HOM05D000045 ORTHO05D000067 1.5e-06 56.6 109 28.4
Solyc04g072045.1 Solanum lycopersicum HOM05D000045 ORTHO05D000067 1.5e-06 56.6 109 28.4
FvH4_3g22671 Fragaria vesca HOM05D000045 ORTHO05D011574 2.0e-06 56.2 88 30.7
FAN16G2892 Fragaria x ananassa HOM05D018569 ORTHO05D011574 2.0e-06 56.2 68 35.3
Rhsim03G0126400 Rhododendron simsii HOM05D000045 ORTHO05D003357 2.0e-06 56.2 76 36.8
Solyc03g094125.1 Solanum lycopersicum HOM05D000045 ORTHO05D000067 2.0e-06 56.2 109 28.4
Solyc04g071265.1 Solanum lycopersicum HOM05D000045 ORTHO05D000067 2.0e-06 56.2 109 28.4
arahy.Tifrunner.gnm1.ann1.DXWX6S Arachis hypogaea HOM05D005194 ORTHO05D003357 2.6e-06 55.8 81 33.3
Solyc01g150145.1 Solanum lycopersicum HOM05D000045 ORTHO05D000067 2.6e-06 55.8 109 28.4
Solyc10g044585.1 Solanum lycopersicum HOM05D000045 ORTHO05D000067 2.6e-06 55.8 109 28.4
TWI18G0819 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 3.4e-06 55.5 115 29.6
arahy.Tifrunner.gnm1.ann1.KMF2PT Arachis hypogaea HOM05D005194 ORTHO05D003357 4.4e-06 55.1 83 31.3
arahy.Tifrunner.gnm1.ann1.Y5TV4Y Arachis hypogaea HOM05D005194 ORTHO05D003357 4.4e-06 55.1 80 30.0
Rhsim05G0159900 Rhododendron simsii HOM05D000045 ORTHO05D000067 4.4e-06 55.1 87 31.0
Rhsim06G0101400 Rhododendron simsii HOM05D000045 ORTHO05D003357 4.4e-06 55.1 110 30.0
Solyc01g110070.3 Solanum lycopersicum HOM05D000045 ORTHO05D000067 4.4e-06 55.1 109 27.5
arahy.Tifrunner.gnm1.ann1.0Z3BG5 Arachis hypogaea HOM05D005194 ORTHO05D003357 5.8e-06 54.7 89 30.3
arahy.Tifrunner.gnm1.ann1.R931AE Arachis hypogaea HOM05D005194 ORTHO05D003357 5.8e-06 54.7 83 32.5
FvH4_7g08581 Fragaria vesca HOM05D018569 ORTHO05D011574 5.8e-06 54.7 110 25.5
Solyc07g042610.2 Solanum lycopersicum HOM05D000045 ORTHO05D000067 5.8e-06 54.7 109 26.6
CANSAT56G4104 Cannabis sativa HOM05D000045 ORTHO05D000067 7.6e-06 54.3 123 29.3
TWI18G0222 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 9.9e-06 53.9 119 31.1


User provided reference genes

Program Settings