Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.350 Acer truncatum HOM05D006346 ORTHO05D007910 0.0e+00 1402.5 704 100.0
Ciclev10007623m.g Citrus clementina HOM05D006346 ORTHO05D007910 0.0e+00 1128.6 678 83.0
Cfa020798 Carpinus fangiana HOM05D006346 ORTHO05D007910 0.0e+00 1085.1 703 78.8
Thecc.09G152100 Theobroma cacao HOM05D006346 ORTHO05D007910 0.0e+00 1084.3 692 79.3
Dinv42829 Davidia involucrata HOM05D006346 ORTHO05D007910 0.0e+00 1080.1 671 81.1
Dinv43271 Davidia involucrata HOM05D006346 ORTHO05D007910 0.0e+00 1080.1 671 81.1
Potri.018G103700 Populus trichocarpa HOM05D006346 ORTHO05D007910 0.0e+00 1079.3 704 77.3
QL02p093888 Quercus lobata HOM05D006346 ORTHO05D007910 0.0e+00 1077.0 705 77.9
Hma1.2p1_0028F.1_g017690 Hydrangea macrophylla HOM05D006346 ORTHO05D007910 4.0e-309 1064.3 692 77.5
COL.COLO4_23953 Corchorus olitorius HOM05D006346 ORTHO05D007910 7.6e-308 1060.1 694 77.8
CSS0042716 Camellia sinensis var. sinensis HOM05D006346 ORTHO05D007910 2.9e-307 1058.1 670 79.9
CiPaw.15G165500 Carya illinoinensis HOM05D006346 ORTHO05D007910 2.4e-306 1055.0 693 77.3
Prupe.7G265700 Prunus persica HOM05D006346 ORTHO05D007910 1.3e-304 1049.3 697 77.2
Sabra18G0089100 Salix brachista HOM05D006346 ORTHO05D007910 3.9e-304 1047.7 746 72.1
Gorai.012G099000 Gossypium raimondii HOM05D006346 ORTHO05D007910 5.1e-304 1047.3 685 76.9
Gohir.D04G088700 Gossypium hirsutum HOM05D006346 ORTHO05D007910 1.9e-303 1045.4 685 76.9
Gohir.A04G059826 Gossypium hirsutum HOM05D006346 ORTHO05D007910 2.5e-303 1045.0 685 77.1
Lj9A719T56 Lonicera japonica HOM05D006346 ORTHO05D007910 1.8e-301 1038.9 706 75.4
TWI34G0405 Tripterygium wilfordii HOM05D006346 ORTHO05D007910 6.9e-301 1036.9 703 75.5
Nitab4.5_0003551g0040 Nicotiana tabacum HOM05D006346 ORTHO05D007910 3.2e-298 1028.1 699 74.2
CANSAT11G2498 Cannabis sativa HOM05D006346 ORTHO05D007910 1.0e-296 1023.1 679 76.4
PGR102G0252 Punica granatum HOM05D006346 ORTHO05D007910 3.0e-296 1021.5 710 73.5
Haze_19155 Corylus avellana HOM05D006346 ORTHO05D007910 5.1e-296 1020.8 709 74.9
GSVIVG01008451001 Vitis vinifera HOM05D006346 ORTHO05D007910 1.9e-295 1018.8 703 75.1
THA.LOC104803912 Tarenaya hassleriana HOM05D006346 ORTHO05D007910 3.3e-295 1018.1 713 73.1
FvH4_1g00650 Fragaria vesca HOM05D006346 ORTHO05D007910 5.6e-295 1017.3 669 76.4
FAN28G1995 Fragaria x ananassa HOM05D006346 ORTHO05D007910 3.7e-294 1014.6 669 76.2
RcHm_v2.0_Chr2g0085271 Rosa chinensis HOM05D006346 ORTHO05D007910 6.2e-294 1013.8 689 74.3
Glyma.07G102300 Glycine max HOM05D006346 ORTHO05D007910 1.4e-293 1012.7 668 76.0
Lalb_Chr08g0234231 Lupinus albus HOM05D006346 ORTHO05D007910 1.8e-293 1012.3 677 75.0
Rhsim01G0026600 Rhododendron simsii HOM05D006346 ORTHO05D007910 1.5e-292 1009.2 710 72.5
HanXRQChr10g0313691 Helianthus annuus HOM05D006346 ORTHO05D007910 3.8e-291 1004.6 707 72.6
FAN26G0534 Fragaria x ananassa HOM05D006346 ORTHO05D007910 8.4e-291 1003.4 661 76.2
Sopen07g001980 Solanum pennellii HOM05D006346 ORTHO05D007910 1.4e-290 1002.7 705 73.2
AL7G21400 Arabidopsis lyrata HOM05D006346 ORTHO05D007910 1.0e-288 996.5 705 72.1
Aqoxy7G03359 Aquilegia oxysepala HOM05D006346 ORTHO05D007910 1.8e-288 995.7 697 74.5
Sed0021167 Sechium edule HOM05D006346 ORTHO05D007910 2.3e-288 995.3 698 72.9
BcaNung01563 Brassica carinata HOM05D006346 ORTHO05D007910 3.9e-288 994.6 697 72.2
CsaV3_2G007650 Cucumis sativus L. HOM05D006346 ORTHO05D007910 3.9e-288 994.6 692 73.8
A03p60280 Brassica napus HOM05D006346 ORTHO05D007910 1.5e-287 992.6 693 72.6
BraA03t15070Z Brassica rapa HOM05D006346 ORTHO05D007910 1.5e-287 992.6 705 71.6
PSO782G0769 Papaver somniferum HOM05D006346 ORTHO05D007910 1.5e-287 992.6 706 72.1
Nn8g39991 Nelumbo nucifera HOM05D006346 ORTHO05D007910 1.9e-287 992.3 683 73.8
Thhalv10024548m.g Eutrema salsugineum HOM05D006346 ORTHO05D007910 2.5e-287 991.9 707 71.9
AT4G30720 Arabidopsis thaliana HOM05D006346 ORTHO05D007910 3.3e-287 991.5 701 71.8
C07p58190 Brassica napus HOM05D006346 ORTHO05D007910 7.4e-287 990.3 697 72.5
Carub.0007s0978 Capsella rubella HOM05D006346 ORTHO05D007910 7.4e-287 990.3 692 72.4
Lj6g0013256 Lotus japonicus HOM05D006346 ORTHO05D007910 1.3e-286 989.6 673 74.6
BolC7t46278H Brassica oleracea HOM05D006346 ORTHO05D007910 2.2e-286 988.8 694 72.5
BcaNung02744 Brassica carinata HOM05D006346 ORTHO05D007910 2.8e-286 988.4 697 72.3
PSO063G0785 Papaver somniferum HOM05D006346 ORTHO05D007910 3.7e-286 988.0 676 73.1
Nitab4.5_0002611g0100 Nicotiana tabacum HOM05D006346 ORTHO05D007910 4.8e-286 987.6 709 71.4
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 8.2e-286 986.9 695 71.4
Phvul.003G072700 Phaseolus vulgaris HOM05D006346 ORTHO05D007910 8.2e-286 986.9 688 73.7
vmacro16782 Vaccinium macrocarpon HOM05D006346 ORTHO05D007910 1.4e-285 986.1 669 73.8
MSTRG.6156 Avicennia marina HOM05D006346 ORTHO05D007910 2.4e-285 985.3 685 73.6
ECA234G1139 Erigeron canadensis HOM05D006346 ORTHO05D007910 2.4e-285 985.3 672 73.1
CAN.G160.15 Capsicum annuum HOM05D006346 ORTHO05D007910 3.1e-285 984.9 710 72.1
Cc06_g14630 Coffea canephora HOM05D006346 ORTHO05D007910 1.0e-283 979.9 711 71.6
Hund08940 Selenicereus undatus HOM05D006346 ORTHO05D007910 2.9e-283 978.4 730 70.5
ClCG02G014350 Citrullus lanatus HOM05D006346 ORTHO05D007910 1.1e-282 976.5 715 71.5
arahy.Tifrunner.gnm1.ann1.ID3JIZ Arachis hypogaea HOM05D006346 ORTHO05D007910 4.2e-282 974.5 669 74.6
Sp7g28630 Schrenkiella parvula HOM05D006346 ORTHO05D007910 4.2e-282 974.5 698 71.6
Aa31LG2G19630 Aethionema arabicum HOM05D006346 ORTHO05D007910 2.1e-281 972.2 708 69.9
EL10Ac8g18923 Beta vulgaris HOM05D006346 ORTHO05D007910 2.1e-281 972.2 682 73.6
AUR62028356 Chenopodium quinoa HOM05D006346 ORTHO05D007910 7.9e-281 970.3 701 71.0
Medtr8g467050 Medicago truncatula HOM05D006346 ORTHO05D007910 2.8e-278 961.8 672 73.1
Actinidia38309 Actinidia chinensis HOM05D006346 ORTHO05D007910 2.9e-275 951.8 602 78.7
Lsat_1_v5_gn_5_89421 Lactuca sativa HOM05D006346 ORTHO05D007910 2.9e-275 951.8 673 72.1
MELO3C004121.2 Cucumis melo HOM05D006346 ORTHO05D007910 1.2e-273 946.4 713 70.0
FAN23G2716 Fragaria x ananassa HOM05D006346 ORTHO05D007910 3.0e-272 941.8 709 68.7
Ca_22901_v3 Cicer arietinum L. HOM05D006346 ORTHO05D007910 4.4e-271 937.9 670 72.2
MD02G1005300 Malus domestica HOM05D006346 ORTHO05D007910 1.4e-269 932.9 625 76.0
Migut.J01382 Erythranthe guttata HOM05D006346 ORTHO05D007910 3.8e-267 924.9 693 69.3
Oeu052219.3 Olea europaea HOM05D006346 ORTHO05D007910 2.3e-264 915.6 739 64.5
Os05g0411200 Oryza sativa ssp. japonica HOM05D006346 ORTHO05D007910 8.8e-264 913.7 702 67.5
SGA_v2.0_scaffold45G17017 Striga asiatica HOM05D006346 ORTHO05D007910 3.7e-262 908.3 695 67.6
HPP92_020605 Vanilla planifolia HOM05D006346 ORTHO05D007910 2.4e-261 905.6 674 68.1
CDE12G0948 Ceratophyllum demersum HOM05D006346 ORTHO05D007910 4.2e-258 894.8 668 70.2
Solyc07g005870.3 Solanum lycopersicum HOM05D006346 ORTHO05D007910 3.3e-255 885.2 704 67.6
ATR0739G030 Amborella trichopoda HOM05D006346 ORTHO05D007910 1.3e-251 873.2 600 72.5
Peaxi162Scf00401g00218 Petunia axillaris HOM05D006346 ORTHO05D007910 6.5e-251 870.9 658 69.9
Zm00001eb288040 Zea mays HOM05D006346 ORTHO05D007910 1.4e-248 863.2 651 65.9
Ah.09g228750 Amaranthus hybridus HOM05D006346 ORTHO05D007910 1.8e-248 862.8 696 65.5
arahy.Tifrunner.gnm1.ann1.VMKR8Z Arachis hypogaea HOM05D006346 ORTHO05D007910 8.3e-246 854.0 590 73.7
Manes.14G142800 Manihot esculenta HOM05D006346 ORTHO05D007910 9.1e-245 850.5 570 75.1
Sc14g0000950 Simmondsia chinensis HOM05D006346 ORTHO05D007910 3.5e-244 848.6 603 72.6
SalBow1G6401 Salvia bowleyana HOM05D006346 ORTHO05D007910 1.1e-242 843.6 573 73.1
Psat4g134640 Pisum sativum HOM05D006346 ORTHO05D007910 4.3e-234 815.1 598 69.9
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.7e-230 803.1 629 65.3
TPR.G10032 Trifolium pratense HOM05D006346 ORTHO05D007910 3.6e-209 732.3 1254 39.7
Hma1.2p1_0028F.1_g017700 Hydrangea macrophylla HOM05D006346 ORTHO05D007910 1.8e-187 660.2 441 76.0
SMO146G0018 Selaginella moellendorffii HOM05D006346 ORTHO05D007910 5.3e-184 648.7 621 55.1
Mapoly0021s0085 Marchantia polymorpha HOM05D006346 ORTHO05D007910 2.6e-183 646.4 651 53.9
Cpa.g.sc46.182 Carica papaya HOM05D006346 ORTHO05D007910 7.1e-181 638.3 400 78.5
Pp3c23_14180 Physcomitrium patens HOM05D006346 ORTHO05D007910 8.7e-179 631.3 634 52.8
AagrBONN_evm.TU.Sc2ySwM_344.1120 Anthoceros agrestis HOM05D006346 ORTHO05D007910 1.5e-178 630.6 655 51.5
TAR383G0381 Trochodendron aralioides HOM05D006346 ORTHO05D007910 3.1e-168 596.3 413 74.8
Glyma.04G155100 Glycine max HOM05D006346 ORTHO05D007910 1.2e-167 594.3 401 72.8
Eucgr.C02507 Eucalyptus grandis HOM05D006346 ORTHO05D007910 7.7e-135 485.3 333 72.4
Cre17.g744997 Chlamydomonas reinhardtii HOM05D006346 ORTHO05D007910 6.5e-134 482.3 725 41.1
PRCOL_00000449 Prasinoderma coloniale HOM05D006346 ORTHO05D007910 2.1e-132 477.2 612 46.4
MCO14G279 Micromonas commoda HOM05D006346 ORTHO05D007910 2.9e-126 456.8 475 52.0
VMungo0251G1020 Vigna mungo HOM05D006346 ORTHO05D007910 1.1e-117 428.3 273 76.6
Eucgr.C02508 Eucalyptus grandis HOM05D006346 ORTHO05D007910 3.6e-108 396.7 307 68.4
TAR383G0466 Trochodendron aralioides HOM05D006346 ORTHO05D007910 1.3e-105 388.3 225 86.2
CAN.G160.19 Capsicum annuum HOM05D006346 ORTHO05D007910 4.3e-101 373.2 464 49.6
AUR62025356 Chenopodium quinoa HOM05D006346 ORTHO05D007910 1.5e-98 364.8 306 64.7
Cpa.g.sc46.183 Carica papaya HOM05D006346 ORTHO05D007910 2.5e-93 347.4 278 68.3
PGSC0003DMG400011203 Solanum tuberosum HOM05D006346 ORTHO05D007910 5.1e-86 323.2 203 79.3
Actinidia24372 Actinidia chinensis HOM05D006346 ORTHO05D007910 8.1e-84 315.8 625 36.3
CARHR238600 Cardamine hirsuta HOM05D006346 ORTHO05D007910 1.4e-83 315.1 262 63.7
AUR62025355 Chenopodium quinoa HOM05D006346 ORTHO05D007910 1.4e-83 315.1 203 77.3
FAN23G0300 Fragaria x ananassa HOM05D006346 ORTHO05D007910 1.8e-62 245.0 155 78.1
SEGI_02941 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 1.3e-49 202.2 148 68.2
Glyma.04G155150 Glycine max HOM05D006346 ORTHO05D007910 6.1e-47 193.4 145 70.3
CAN.G1961.3 Capsicum annuum HOM05D006346 ORTHO05D007910 4.5e-42 177.2 203 52.7
MD15G1149600 Malus domestica HOM05D006346 ORTHO05D007910 3.8e-33 147.5 196 48.5
SEGI_30041 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 8.5e-33 146.4 102 68.6
Glyma.04G155200 Glycine max HOM05D006346 ORTHO05D007910 7.5e-29 133.3 106 66.0
SalBow1G2918 Salvia bowleyana HOM05D006346 ORTHO05D007910 9.1e-27 126.3 103 65.0
ECA238G2318 Erigeron canadensis HOM05D006346 ORTHO05D007910 2.2e-17 95.1 68 63.2
SEGI_23921 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 2.2e-17 95.1 122 42.6
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 2.5e-16 91.7 78 66.7
HanXRQChr01g0001911 Helianthus annuus HOM05D006346 ORTHO05D007910 3.6e-15 87.8 56 71.4
A05p44400 Brassica napus HOM05D034890 ORTHO05D100541 2.7e-10 71.6 68 52.9


User provided reference genes

Program Settings