Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 1.0e-128 463.4 231 100.0
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 1.1e-93 347.1 256 69.9
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 1.2e-87 327.0 248 66.5
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 3.1e-85 318.9 258 62.4
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 4.1e-85 318.5 254 63.4
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 5.4e-85 318.2 256 62.5
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 2.0e-84 316.2 254 63.0
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 7.7e-84 314.3 247 61.5
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 1.9e-82 309.7 249 61.8
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 3.3e-82 308.9 252 63.5
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 1.6e-81 306.6 240 64.2
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 2.1e-81 306.2 249 63.1
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 2.8e-81 305.8 247 61.5
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 2.8e-81 305.8 253 62.8
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 3.6e-81 305.4 247 61.5
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 4.7e-81 305.1 251 60.6
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 8.0e-81 304.3 248 61.7
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 8.0e-81 304.3 248 60.9
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 8.0e-81 304.3 248 63.3
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 1.8e-80 303.1 248 61.7
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 1.8e-80 303.1 255 60.0
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 1.8e-80 303.1 247 62.3
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 2.3e-80 302.8 248 61.3
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 5.2e-80 301.6 243 63.0
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 6.8e-80 301.2 249 60.6
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 6.8e-80 301.2 244 62.7
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 1.5e-79 300.1 248 60.5
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 2.6e-79 299.3 249 59.4
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 5.7e-79 298.1 247 60.7
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 9.8e-79 297.4 244 62.3
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 1.3e-78 297.0 248 62.1
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 1.3e-78 297.0 230 65.7
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 1.7e-78 296.6 251 59.8
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 1.7e-78 296.6 269 56.1
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 2.2e-78 296.2 273 56.4
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 2.2e-78 296.2 250 60.4
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 4.9e-78 295.0 249 59.4
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 6.3e-78 294.7 249 60.6
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 1.4e-77 293.5 251 59.8
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 1.4e-77 293.5 251 59.8
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 1.4e-77 293.5 248 62.5
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 1.8e-77 293.1 251 59.0
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 5.4e-77 291.6 254 61.0
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 5.4e-77 291.6 262 57.3
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 9.2e-77 290.8 272 59.2
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 1.6e-76 290.0 245 60.0
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 4.5e-76 288.5 239 62.8
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 2.3e-75 286.2 249 57.4
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 3.8e-75 285.4 214 66.8
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 5.0e-75 285.0 234 62.0
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 6.6e-75 284.6 276 55.1
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 1.5e-74 283.5 255 58.8
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 1.9e-74 283.1 273 57.5
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 2.1e-73 279.6 257 59.9
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 3.6e-73 278.9 240 58.3
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 6.1e-73 278.1 274 53.3
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 6.1e-73 278.1 237 59.9
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 8.0e-73 277.7 257 57.2
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 6.8e-72 274.6 253 56.9
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 1.2e-71 273.9 244 54.1
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 1.2e-71 273.9 274 54.0
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 9.8e-71 270.8 253 55.7
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 2.9e-70 269.2 228 59.2
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 6.4e-70 268.1 256 55.9
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 8.3e-70 267.7 256 55.9
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 8.3e-70 267.7 246 56.1
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 1.4e-69 266.9 248 54.8
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 4.1e-69 265.4 247 58.3
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 7.8e-68 261.2 251 56.6
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 8.6e-67 257.7 230 57.4
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 4.3e-66 255.4 241 56.0
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 3.6e-65 252.3 249 50.6
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 1.1e-64 250.8 270 54.1
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 6.8e-64 248.1 259 49.8
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 2.6e-63 246.1 228 57.5
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 2.9e-62 242.7 172 67.4
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 1.1e-61 240.7 252 53.6
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 2.4e-61 239.6 236 53.8
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 3.5e-60 235.7 376 38.3
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 6.0e-60 235.0 164 68.3
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 5.1e-59 231.9 253 51.4
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 4.3e-58 228.8 225 53.8
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 1.6e-57 226.9 246 45.5
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 6.2e-57 224.9 237 53.2
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 8.1e-57 224.6 253 44.7
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 8.3e-54 214.5 188 59.0
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 5.4e-53 211.8 207 53.6
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 1.6e-52 210.3 245 49.0
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 3.0e-51 206.1 213 46.0
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 1.1e-50 204.1 156 62.8
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 7.3e-50 201.4 207 54.1
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 1.6e-49 200.3 242 46.3
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 2.8e-49 199.5 204 52.0
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 1.4e-48 197.2 152 61.8
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 4.0e-48 195.7 166 55.4
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 7.6e-47 191.4 215 50.2
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 1.4e-45 187.2 143 62.9
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 4.2e-45 185.7 255 45.1
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 4.2e-45 185.7 255 45.1
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 1.0e-43 181.0 132 64.4
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 2.3e-43 179.9 132 64.4
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 2.3e-43 179.9 150 58.0
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 1.5e-42 177.2 132 63.6
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 1.5e-42 177.2 132 63.6
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 5.3e-40 168.7 130 63.8
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 5.3e-40 168.7 113 68.1
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 1.5e-39 167.2 124 64.5
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 4.4e-39 165.6 136 59.6
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 4.9e-38 162.2 118 67.8
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 6.4e-38 161.8 162 58.0
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 6.0e-36 155.2 114 66.7
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 3.6e-33 146.0 204 41.7
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 7.6e-31 138.3 208 39.4
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 1.3e-30 137.5 125 56.0
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 4.2e-29 132.5 117 58.1
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 7.9e-28 128.3 294 32.7
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 1.3e-25 120.9 100 59.0
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 5.3e-24 115.5 109 56.0
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 1.3e-22 110.9 100 53.0
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 3.8e-22 109.4 103 54.4
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 1.1e-21 107.8 98 52.0
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 7.1e-21 105.1 106 53.8
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 1.6e-20 104.0 94 57.4
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 1.1e-18 97.8 56 73.2
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 4.3e-18 95.9 320 24.7
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 7.4e-18 95.1 63 71.4
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 4.5e-15 85.9 43 86.0
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.2e-12 77.8 69 53.6
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 6.7e-11 72.0 67 53.7
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 5.7e-10 68.9 64 46.9
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 2.2e-09 67.0 46 67.4
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 3.1e-08 63.2 32 84.4


User provided reference genes

Program Settings